CsGy3G030325 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G030325
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Histone H2B
Location	Gy14Chr3: 30392413 .. 30393407 (-)
RNA-Seq Expression	CsGy3G030325
Synteny	CsGy3G030325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCTCTGAATCACTCTCTCCGTCTTCAACCTTGCTAGACCACCTTCACCTTTATTCCTGAATATCCTCTGAGTTCCAACAATGGCGCCAACGAAAGCCGAAAAGAAGCCCGCAGAGAAGAAGCCAGTGGAGAAAACCCCTTCCTCGGCGGAGAAGAAGCCGAAGGCTGAGAAGAAGATCGTCAAAGACGGTGGCGATAAGAAGAAGAAGGTTAAAAAGAGCAACGAGACTTACAAGATCTACATTTTCAAGGTTTTGAAGCAGGTTCATCCCGATATTGGAATCTCCAGCAAGGCAATGGGCATTATGAACAGTTTTATCAACGACATCTTCGAAAAACTTGCTCAAGAGGCTTCGAAATTGGCAAGATACAACAAGAAACCTACGATCACTTCACGAGAGATCCAAACTGCTGTTCGATTAGTGCTTCCTGGTGAGTTAGCAAAGCACGCTGTTTCTGAAGGAACTAAGGCCGTAACCAAATTTACAAGCTCTTAGATAGATACCGTTGTCGGCGAATTTTGGAATTAGGGTTTCGTTTTGGTTACCCTTTGTGTAGATCTTGGTTTCTCTCTGGTTACAGGTGTATGGAACTACTAATAGTTTTAATGGATAACAAAGTTCTTTCATCGGTATATTCTCTTCCATTTTCTTTCGCAAATGGCCGATGCTTCTATTATAATGTGATAGACTAGGGTTTCTGAAGATCCGACTGGTATTTTGTTCTCGATTCGATTATAGAATACATGCTCTCATAATCTGAGTTGAAAGTTTCTTAACAAGAGATCGATCTATCGATCGAACTGGTGATGATAGGCAATATTGATGAGAATCGAGGTAATTCAGGAACGCCATTTTGATTGTGATTGAGTTTGCTTGTAGCAGGATTCTGTCAGTTGTGAAGTGAGATAGCATTAAGTGCTTTGAGAGAATCGATGTGGTTAGGGTTTTGTTATTTGCAACTCGTGATGCGAAAGATGATAAGAAATATAAG

mRNA sequence

GTTGCTCTGAATCACTCTCTCCGTCTTCAACCTTGCTAGACCACCTTCACCTTTATTCCTGAATATCCTCTGAGTTCCAACAATGGCGCCAACGAAAGCCGAAAAGAAGCCCGCAGAGAAGAAGCCAGTGGAGAAAACCCCTTCCTCGGCGGAGAAGAAGCCGAAGGCTGAGAAGAAGATCGTCAAAGACGGTGGCGATAAGAAGAAGAAGGTTAAAAAGAGCAACGAGACTTACAAGATCTACATTTTCAAGGTTTTGAAGCAGGTTCATCCCGATATTGGAATCTCCAGCAAGGCAATGGGCATTATGAACAGTTTTATCAACGACATCTTCGAAAAACTTGCTCAAGAGGCTTCGAAATTGGCAAGATACAACAAGAAACCTACGATCACTTCACGAGAGATCCAAACTGCTGTTCGATTAGTGCTTCCTGGTGAGTTAGCAAAGCACGCTGTTTCTGAAGGAACTAAGGCCGTAACCAAATTTACAAGCTCTTAGATAGATACCGTTGTCGGCGAATTTTGGAATTAGGGTTTCGTTTTGGTTACCCTTTGTGTAGATCTTGGTTTCTCTCTGGTTACAGGTGTATGGAACTACTAATAGTTTTAATGGATAACAAAGTTCTTTCATCGGTATATTCTCTTCCATTTTCTTTCGCAAATGGCCGATGCTTCTATTATAATGTGATAGACTAGGGTTTCTGAAGATCCGACTGGTATTTTGTTCTCGATTCGATTATAGAATACATGCTCTCATAATCTGAGTTGAAAGTTTCTTAACAAGAGATCGATCTATCGATCGAACTGGTGATGATAGGCAATATTGATGAGAATCGAGGTAATTCAGGAACGCCATTTTGATTGTGATTGAGTTTGCTTGTAGCAGGATTCTGTCAGTTGTGAAGTGAGATAGCATTAAGTGCTTTGAGAGAATCGATGTGGTTAGGGTTTTGTTATTTGCAACTCGTGATGCGAAAGATGATAAGAAATATAAG

Coding sequence (CDS)

ATGGCGCCAACGAAAGCCGAAAAGAAGCCCGCAGAGAAGAAGCCAGTGGAGAAAACCCCTTCCTCGGCGGAGAAGAAGCCGAAGGCTGAGAAGAAGATCGTCAAAGACGGTGGCGATAAGAAGAAGAAGGTTAAAAAGAGCAACGAGACTTACAAGATCTACATTTTCAAGGTTTTGAAGCAGGTTCATCCCGATATTGGAATCTCCAGCAAGGCAATGGGCATTATGAACAGTTTTATCAACGACATCTTCGAAAAACTTGCTCAAGAGGCTTCGAAATTGGCAAGATACAACAAGAAACCTACGATCACTTCACGAGAGATCCAAACTGCTGTTCGATTAGTGCTTCCTGGTGAGTTAGCAAAGCACGCTGTTTCTGAAGGAACTAAGGCCGTAACCAAATTTACAAGCTCTTAG

Protein sequence

MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*

Homology

[Close]

BLAST of CsGy3G030325 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGD--KKKKVKKSNETYKIYIFKV 60
           M PTKAEKKPAEKKP EK P  AEKKPKAEKKI K+G    KKK+ KKS ETYKIYIFKV
Sbjct: 1   MPPTKAEKKPAEKKPAEKAP--AEKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy3G030325 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-53
Identity = 120/140 (85.71%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGD--KKKKVKKSNETYKIYIFKV 60
           MAP  AEKKPA KKP EK P  AEK PKAEKKI K+GG   KKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAP--AEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy3G030325 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-53
Identity = 121/140 (86.43%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGG---DKKKKVKKSNETYKIYIFK 60
           MAP  AEKKPAEKKP  K P  AEK PKAEKKI KD G    KKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAP--AEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 138
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of CsGy3G030325 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-52
Identity = 123/148 (83.11%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEK-----TPSSAEKKPKAEKKIVKDGG-----DKKKKVKKSNET 60
           MAP KAEKKPAEKKP E+       + AEKKPKA KK+ K+GG      KKK+VKKS ET
Sbjct: 1   MAP-KAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CsGy3G030325 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-52
Identity = 125/151 (82.78%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTP---------SSAEKKPKAEKKIVKD---GGDKKKKV-KKS 60
           MAP KAEKKPAEKKP  + P         + AEKKPKA KK+ K+   GGDKKKK+ KKS
Sbjct: 1   MAP-KAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  NETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CsGy3G030325 vs. NCBI nr
Match: XP_004137790.1 (probable histone H2B.3 [Cucumis sativus] >KGN58892.1 hypothetical protein Csa_002030 [Cucumis sativus])

HSP 1 Score: 251 bits (641), Expect = 1.28e-83
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLK 60
           MAPTKAEKKPAEKKP EKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLK
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLK 60

Query: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL 120
           QVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL
Sbjct: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 121 AKHAVSEGTKAVTKFTSS 138
           AKHAVSEGTKAVTKFTSS
Sbjct: 121 AKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy3G030325 vs. NCBI nr
Match: XP_038903506.1 (probable histone H2B.3 [Benincasa hispida])

HSP 1 Score: 240 bits (613), Expect = 2.46e-79
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EK PSSAEKKPKAEKKI KDGGDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKAPSSAEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. NCBI nr
Match: XP_008442575.1 (PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like [Cucumis melo var. makuwa] >TYK25065.1 histone H2B-like [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (612), Expect = 3.49e-79
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTPSSAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. NCBI nr
Match: XP_022958236.1 (probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B.3 [Cucurbita maxima] >XP_023538865.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6596423.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027965.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (606), Expect = 2.87e-78
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTP+SAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. NCBI nr
Match: XP_022935032.1 (probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B.3 [Cucurbita maxima] >XP_023527987.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6580565.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017318.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (603), Expect = 8.23e-78
Identity = 132/139 (94.96%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTP+S+EKK KAEKKI KDGGDKKKK VKKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. ExPASy TrEMBL
Match: A0A0A0LDR9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_3G734930 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 6.19e-84
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLK 60
           MAPTKAEKKPAEKKP EKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLK
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIVKDGGDKKKKVKKSNETYKIYIFKVLK 60

Query: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL 120
           QVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL
Sbjct: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 121 AKHAVSEGTKAVTKFTSS 138
           AKHAVSEGTKAVTKFTSS
Sbjct: 121 AKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy3G030325 vs. ExPASy TrEMBL
Match: A0A5D3DN75 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 PE=3 SV=1)

HSP 1 Score: 240 bits (612), Expect = 1.69e-79
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTPSSAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. ExPASy TrEMBL
Match: A0A1S3B6N1 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1)

HSP 1 Score: 240 bits (612), Expect = 1.69e-79
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTPSSAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. ExPASy TrEMBL
Match: A0A6J1KUE6 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1)

HSP 1 Score: 238 bits (606), Expect = 1.39e-78
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTP+SAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. ExPASy TrEMBL
Match: A0A6J1H1K6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111459261 PE=3 SV=1)

HSP 1 Score: 238 bits (606), Expect = 1.39e-78
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60
           MAPTKAEKKPAEKKP EKTP+SAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 138
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy3G030325 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-54
Identity = 120/140 (85.71%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGGD--KKKKVKKSNETYKIYIFKV 60
           MAP  AEKKPA KKP EK P  AEK PKAEKKI K+GG   KKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAP--AEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy3G030325 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-54
Identity = 121/140 (86.43%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSSAEKKPKAEKKIVKDGG---DKKKKVKKSNETYKIYIFK 60
           MAP  AEKKPAEKKP  K P  AEK PKAEKKI KD G    KKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAP--AEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 138
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of CsGy3G030325 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53
Identity = 125/151 (82.78%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTP---------SSAEKKPKAEKKIVKD---GGDKKKKV-KKS 60
           MAP KAEKKPAEKKP  + P         + AEKKPKA KK+ K+   GGDKKKK+ KKS
Sbjct: 1   MAP-KAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  NETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CsGy3G030325 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.4e-53
Identity = 125/152 (82.24%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSS---------AEKKPKAEKKIVKD---GG--DKKKKVKK 60
           MAP KA KKPAEKKP EK P+          AEKKPKA KK+ K+   GG   KKK+VKK
Sbjct: 1   MAP-KAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  SNETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CsGy3G030325 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.4e-53
Identity = 124/146 (84.93%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPVEKTPSS----AEKKPKAEKKIVKD---GGDKKKKV-KKSNETYK 60
           MAP KAEKKPAEKKPVE+   +    AEKKPKA KK+ K+   GGDKKKK+ KKS ETYK
Sbjct: 1   MAP-KAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SKLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 139
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

The following BLAST results are available for this feature:

BLAST of CsGy3G030325 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SU99	1.5e-55	87.86	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9LFF6	4.1e-53	85.71	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
Q9ZUS0	6.9e-53	86.43	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
O22582	2.0e-52	83.11	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
P40283	2.6e-52	82.78	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]

BLAST of CsGy3G030325 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137790.1	1.28e-83	99.28	probable histone H2B.3 [Cucumis sativus] >KGN58892.1 hypothetical protein Csa_00...	[more]
XP_038903506.1	2.46e-79	95.68	probable histone H2B.3 [Benincasa hispida]	[more]
XP_008442575.1	3.49e-79	95.68	PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like ...	[more]
XP_022958236.1	2.87e-78	94.24	probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B...	[more]
XP_022935032.1	8.23e-78	94.96	probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B...	[more]

BLAST of CsGy3G030325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDR9	6.19e-84	99.28	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_3G734930 PE=3 SV=1	[more]
A0A5D3DN75	1.69e-79	95.68	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 P...	[more]
A0A1S3B6N1	1.69e-79	95.68	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1	[more]
A0A6J1KUE6	1.39e-78	94.24	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1	[more]
A0A6J1H1K6	1.39e-78	94.24	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111459261 PE=3 SV=1	[more]

BLAST of CsGy3G030325 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53650.1	2.9e-54	85.71	Histone superfamily protein	[more]
AT2G37470.1	4.9e-54	86.43	Histone superfamily protein	[more]
AT5G59910.1	1.9e-53	82.78	Histone superfamily protein	[more]
AT2G28720.1	2.4e-53	82.24	Histone superfamily protein	[more]
AT3G46030.1	2.4e-53	84.93	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 70..90 score: 75.74 coord: 122..135 score: 92.65 coord: 92..109 score: 76.51 coord: 109..122 score: 92.45 coord: 51..69 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 41..137 e-value: 2.1E-73 score: 259.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..138
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 106..128
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..114 e-value: 1.7E-22 score: 80.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..138 e-value: 5.3E-60 score: 203.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR23428:SF273	HISTONE H2B.4	coord: 5..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G030325.1	CsGy3G030325.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity