CsGy3G029205 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G029205
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 29818836 .. 29819117 (-)
RNA-Seq Expression	CsGy3G029205
Synteny	CsGy3G029205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCGCTTAGAGTAAGAAGAAAAATAAAGCGAAGAAAAAGGAAAAACAGTGTTGGAAGAACGCACTTGAAGAGATCGCCGTCCACCGGACGTGCTGACAGGAAGAGGTTTCGCAATTGTATCCGAATACAGTTACCCGCTTGCGTCGTCAGGGTGTTTGGCGCCGTCGTTACCTCAGTCGCGGAAGCAGTCGGAGGAGTGAGCGTCATAGTTTTGGGGGGAAATTATATGAAGGGTAATAACGTCTTCTTACCTCACAAAACTCCCGTTTGTCCGTAA

mRNA sequence

ATGAAAGCGCTTAGAGTAAGAAGAAAAATAAAGCGAAGAAAAAGGAAAAACAGTGTTGGAAGAACGCACTTGAAGAGATCGCCGTCCACCGGACGTGCTGACAGGAAGAGGTTTCGCAATTGTATCCGAATACAGTTACCCGCTTGCGTCGTCAGGGTGTTTGGCGCCGTCGTTACCTCAGTCGCGGAAGCAGTCGGAGGAGTGAGCGTCATAGTTTTGGGGGGAAATTATATGAAGGGTAATAACGTCTTCTTACCTCACAAAACTCCCGTTTGTCCGTAA

Coding sequence (CDS)

ATGAAAGCGCTTAGAGTAAGAAGAAAAATAAAGCGAAGAAAAAGGAAAAACAGTGTTGGAAGAACGCACTTGAAGAGATCGCCGTCCACCGGACGTGCTGACAGGAAGAGGTTTCGCAATTGTATCCGAATACAGTTACCCGCTTGCGTCGTCAGGGTGTTTGGCGCCGTCGTTACCTCAGTCGCGGAAGCAGTCGGAGGAGTGAGCGTCATAGTTTTGGGGGGAAATTATATGAAGGGTAATAACGTCTTCTTACCTCACAAAACTCCCGTTTGTCCGTAA

Protein sequence

MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTSVAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP*

Homology

[Close]

BLAST of CsGy3G029205 vs. NCBI nr
Match: KGN58769.1 (hypothetical protein Csa_001940 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 6.37e-56
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS 60
          MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS
Sbjct: 1  MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS 60

Query: 61 VAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP 93
          VAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP
Sbjct: 61 VAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP 93

[Close]

BLAST of CsGy3G029205 vs. NCBI nr
Match: TYK24972.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 4.02e-18
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 16   KNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTSVAEAVGGVSVIVLGG 75
            K +  RTHLK SPST RA RKRFRNCIRI+L A VVRVF AVVTSVAEA+GGVS I LGG
Sbjct: 3218 KKTRQRTHLKSSPSTVRAARKRFRNCIRIRLLALVVRVFAAVVTSVAEAIGGVSAIDLGG 3277

Query: 76   NYMKG 80
            NY KG
Sbjct: 3278 NYFKG 3282

[Close]

BLAST of CsGy3G029205 vs. ExPASy TrEMBL
Match: A0A0A0LCU2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731795 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 3.09e-56
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS 60
          MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS
Sbjct: 1  MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS 60

Query: 61 VAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP 93
          VAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP
Sbjct: 61 VAEAVGGVSVIVLGGNYMKGNNVFLPHKTPVCP 93

[Close]

BLAST of CsGy3G029205 vs. ExPASy TrEMBL
Match: A0A5D3DN76 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00890 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.95e-18
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 16   KNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTSVAEAVGGVSVIVLGG 75
            K +  RTHLK SPST RA RKRFRNCIRI+L A VVRVF AVVTSVAEA+GGVS I LGG
Sbjct: 3218 KKTRQRTHLKSSPSTVRAARKRFRNCIRIRLLALVVRVFAAVVTSVAEAIGGVSAIDLGG 3277

Query: 76   NYMKG 80
            NY KG
Sbjct: 3278 NYFKG 3282

The following BLAST results are available for this feature:

BLAST of CsGy3G029205 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G029205 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58769.1	6.37e-56	100.00	hypothetical protein Csa_001940 [Cucumis sativus]	[more]
TYK24972.1	4.02e-18	76.92	putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma...	[more]

BLAST of CsGy3G029205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCU2	3.09e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731795 PE=4 SV=1	[more]
A0A5D3DN76	1.95e-18	76.92	Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ...	[more]

BLAST of CsGy3G029205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G029205.1	CsGy3G029205.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity