CsGy3G027580 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G027580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Arabinogalactan peptide 23
Location	Gy14Chr3: 28670492 .. 28670674 (+)
RNA-Seq Expression	CsGy3G027580
Synteny	CsGy3G027580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCACCGCCGTCGTAGCTGCAGATGAGGCCTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCTGGCATTGGTGTCCCGGCAATTGGGTCTCTCGTCGGCGCTTCCTTGCTCTCCTTCGCCGCTTACTACTTGTAA

mRNA sequence

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCACCGCCGTCGTAGCTGCAGATGAGGCCTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCTGGCATTGGTGTCCCGGCAATTGGGTCTCTCGTCGGCGCTTCCTTGCTCTCCTTCGCCGCTTACTACTTGTAA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCACCGCCGTCGTAGCTGCAGATGAGGCCTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCTGGCATTGGTGTCCCGGCAATTGGGTCTCTCGTCGGCGCTTCCTTGCTCTCCTTCGCCGCTTACTACTTGTAA

Protein sequence

MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL*

Homology

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BLAST of CsGy3G027580 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-13
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A   +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

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BLAST of CsGy3G027580 vs. NCBI nr
Match: KGN58598.1 (hypothetical protein Csa_001979 [Cucumis sativus])

HSP 1 Score: 105 bits (262), Expect = 3.06e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. NCBI nr
Match: KAA0048336.1 (Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK01129.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 4.05e-24
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACA+LFAAATV+A VA D+ALAPAPGPSSGA IG+PAIGSLVGASLLSFAAYYL
Sbjct: 1  MEMKKIACAILFAAATVSAAVAEDKALAPAPGPSSGAAIGLPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. NCBI nr
Match: XP_038905644.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 4.86e-23
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATV+A VA DEALAPAPGPSSGA IG+PAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 1.40e-22
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS +GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 4.69e-21
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKI CA+LFAAATV+AVVA DEA APAPGP+SGA  G+PAIGSL+GASLLS AAYYL
Sbjct: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.48e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. ExPASy TrEMBL
Match: A0A5A7U280 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00270 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.96e-24
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACA+LFAAATV+A VA D+ALAPAPGPSSGA IG+PAIGSLVGASLLSFAAYYL
Sbjct: 1  MEMKKIACAILFAAATVSAAVAEDKALAPAPGPSSGAAIGLPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.76e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS +GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.23e-21
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEM KI CA+LFAAATV+AVVA DEA APAPGP+SGA +G+PAIGSL+GASLLS AAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.87e-20
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKI CAVLFAAATVTA VA +EA APAPGP+S A +G+PAIGSL+GASLLS AAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of CsGy3G027580 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-14
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A   +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CsGy3G027580 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-13
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGP-SSGAGIGVPAIGSLVGASLLSFAAYY 60
          MEMKKIAC V+FAAA++TAV+AA E  APAPGP +SGA + VPA+GSLVGASL+S  AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

The following BLAST results are available for this feature:

BLAST of CsGy3G027580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	3.1e-13	70.00	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of CsGy3G027580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58598.1	3.06e-28	100.00	hypothetical protein Csa_001979 [Cucumis sativus]	[more]
KAA0048336.1	4.05e-24	88.33	Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK01129.1 Arabinogalacta...	[more]
XP_038905644.1	4.86e-23	86.67	arabinogalactan protein 23-like [Benincasa hispida]	[more]
XP_022983304.1	1.40e-22	86.67	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7019275.1	4.69e-21	81.67	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsGy3G027580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U8	1.48e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1	[more]
A0A5A7U280	1.96e-24	88.33	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1J6Y9	6.76e-23	86.67	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4...	[more]
A0A6J1K873	3.23e-21	80.00	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4...	[more]
A0A6J1HQG2	1.87e-20	80.00	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4...	[more]

BLAST of CsGy3G027580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	2.2e-14	70.00	arabinogalactan protein 23	[more]
AT2G41905.1	9.2e-13	72.13	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..60
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G027580.2	CsGy3G027580.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane