CsGy3G021980 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G021980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	Gy14Chr3: 20329220 .. 20332424 (+)
RNA-Seq Expression	CsGy3G021980
Synteny	CsGy3G021980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGAGTCCTCCTTCCTCAAAACGAAAAAGAAAAAAAATCTGTTTTTCCTCGCCTCTTCCAGAAAGGGTTTAGTACCTTAAACCCCAATCCTATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCATTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAACCTTTTCGTTTCCGGTAAATCGTTCTTTCTTAATCTATCTGCCTTGCGTTTATTTACTTTAACAATCATGTATTTGCGTTATGTATATTGCTCCCTTTCTGTTCTGAAACTGCTAACGTTATTTTGATTTATGGTTTCATTCTTGCCAATTTTTTTTGGAGTCTGGAATTTCATTTTTCCTGTTCTTCTTTTGGTCCTATTTTAGCTGTCTTAGTAATTGAGAAATGCTTAGTTACCTTTTTTTTTTAATAAATATTTTCTAACCTTCGATTGTCAATTTTATGGTATCTTTTTAGTTAGTGTTGAGATATCTTTTTTTATTTTTTATGCCTCTTCTTGTTCTTTGCCTTTAATTTGCTTCACCTCTCGGTTTTGAATTGTTGAGATGCATACGTATATTTCTAGATGGGGAAGTTTAGTAATTGGTGGAATAGTAAGTATTGTGAGTACAATCTATGCTTGACTGGACCTAATGAGGTGGCTATCCATTCTCTTTGGATGTTGGCCTCCTCTACGTTTATCTTTTTCAATGATCGATTCTTGGAAGCTGGAATTGAAATTTGGCTAATGTGTTTGTTGAGCTGTGTTTCTGTTTCTTTTCAAGTAGAGGAATTGTTCTGTCTTTTAATACAGAATTTTCAAGTTTTATTGTGTTTATGAAATTAATGAACTGTTTGTGAAGCACGTAATTGTTGATGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGGTCTGTCCATTCGCATTGCAAGTTTGATTTGTGCTTAGACCTGAATTTTTTCCATCTTTTAACCTGTTGTTTTCTGTTCTGTTTGTAGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCAGTTTTCTCATTTGAGACGTTGAAGTTTATTTGGTGTGTATGTAGTGTTAATCCACATTTACATAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCATAGAGGCTAAGGTCGTTGACTACCCTTCTAATAGACAACTAAGAAATGAGAAAGAAAATGAATAAGAATATGACTTCAATGTGTTAATTGGCGTATCACAGAATAAATATAAGATTCCTGAATATGGTGTGTGGTGTTATGTTATCCACATATGCGTACAAGATAGTATTCTAAAGAATTTGATTGGCAACATAGAGAACATATCCTTACAGCACTCAGCTGTTGATTATGATTCATGCTTTGCATATTTTGGATCTTATGGTACCTGGCTCGGCTGATAGATCTGCTGGTTACATGGGAGTGCAGTTTCTCCTTTATTCTCATGTTCAATGGTGTTTGCTTTATGTAGTCCTTTCAGACAATAATTATTTTTGGTAATTCATTGATTTATTTGTAGGATTTTCTGATATAATTTGAATCCTTTCATTTGAGCAACATGGTGGTGAGAGTATTTTTTTTTTCATTACCTTTTTCTTGGTGGGGCATTGAGCATTTAGTCGGGTTCATTTTTTCTTTTGCTGTTGCATTGTAATGGATGTTTAAGTTTAACCGCTTAAACTGGCCTGGTTAGTGGTCACTCACGAATATAAGAAAATAAACACGTGACTTTACAATGTTGAAGAAAAACATTAACTATTGGACTTTAACAATTCTTTGAATCTTGTAAAGGGTACCACTTGGAAACATTATTGTTACTATTATCATCAAGTTTTAAAATGATTGCCAATATGTGGCTAAATGGTTGGTTGGTGAATCTTTTATAGAAAGTACAATCTTGACAATGCAAAATGGTTGTATTGAACAAACCGATCTAGGTTTCTTTTAAATCGATTTTGTCAAACTTTCCTAGAACTTCCCTTGGTTTGCTTCATTGTCATTTTTGACATTTTAGTAGAATACTCCCATTATGAGCCTCGTTCAATTGATTTGATTCCATGTGTCTTACCTCTCTGATCCCCAATTAAAACATTTACTCTGATAAACTTTACAAATTAGAATGCCCGAAAATAAGATTTAAGAAATTGGGTTGATGATTGCTTTTGAACACGTGTTGAAATTTGATTACTTATAATTGAATGATGATGAGTCTCTTTTTGTTTTCCCTCTTAATGTTATCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCTGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAACGATGAAGGATGCTTCCATATCCATTGAACTCTCTTGATCTGCAAAATGGCACTTAACTTTATATACATGATTTAGGTTATTTCTTCATTGGAGGTTCGTTGTTCTCTTCCGTTGCTGATAACTTTTTTGTTCTGCGGAACTGTAGATTAGCCGCAGGTATTGAGTTGAGAATATCTGAATTGAGACAGTAGCATTTTTACAGGTACTACATGTATGATCTACTTTTCAACATATTTAGTCAAAACTATTTTATTTATATATATGTTTCGCCAATAAACATACTTTGCATTGCGTATTTGTTACTGATAAGCTTAGAGTTTGTTCTTGTCGTGTATGCTTTTGGATTAATTTCTAGTTAACCACACATTGACCTCTACGAATAGGTAAATCTGGATTCAAATATTGGAATATTTTATTTATGGTTAAAATACCAAATCTTTGTATTTTGAGTATCTTTTTTTCCATTTTTTTTATCTATATACTTAGCAATCACTCTTAAGGTCCTTGAAGACTCGATAAATCTTGAATTTATTATTTTAAGGTTATT

mRNA sequence

AGAAGAAGAGTCCTCCTTCCTCAAAACGAAAAAGAAAAAAAATCTGTTTTTCCTCGCCTCTTCCAGAAAGGGTTTAGTACCTTAAACCCCAATCCTATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCATTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCAGTTTTCTCATTTGAGACGTTGAAGTTTATTTGGTGTGTATGTAGTGTTAATCCACATTTACATAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCATAGAGGCTAAGGTCGTTGACTACCCTTCTAATAGACAACTAAGAAATGAGAAAGAAAATGAATAAGAATATGACTTCAATGTGTTAATTGGCGTATCACAGAATAAATATAAGATTCCTGAATATGGTGTGTGGTGTTATGTTATCCACATATGCGTACAAGATAGTATTCTAAAGAATTTGATTGGCAACATAGAGAACATATCCTTACAGCACTCAGCTGTTGATTATGATTCATGCTTTGCATATTTTGGATCTTATGGTACCTGGCTCGGCTGATAGATCTGCTGGTTACATGGGAGTGCAGTTTCTCCTTTATTCTCATGTTCAATGGTGTTTGCTTTATGTAGTCCTTTCAGACAATAATTATTTTTGGTAATTCATTGATTTATTTGTAGGATTTTCTGATATAATTTGAATCCTTTCATTTGAGCAACATGGTGGTGAGAGTATTTTTTTTTTCATTACCTTTTTCTTGGTGGGGCATTGAGCATTTAGTCGGGTTCATTTTTTCTTTTGCTGTTGCATTGTAATGGATGTTTAAGTTTAACCGCTTAAACTGGCCTGGTTAGTGGTCACTCACGAATATAAGAAAATAAACACGTGACTTTACAATGTTGAAGAAAAACATTAACTATTGGACTTTAACAATTCTTTGAATCTTGTAAAGGGTACCACTTGGAAACATTATTGTTACTATTATCATCAAGTTTTAAAATGATTGCCAATATGTGGCTAAATGGTTGGTTGGTGAATCTTTTATAGAAAGTACAATCTTGACAATGCAAAATGGTTGTATTGAACAAACCGATCTAGGTTTCTTTTAAATCGATTTTGTCAAACTTTCCTAGAACTTCCCTTGGTTTGCTTCATTGTCATTTTTGACATTTTAGTAGAATACTCCCATTATGAGCCTCGTTCAATTGATTTGATTCCATGTGTCTTACCTCTCTGATCCCCAATTAAAACATTTACTCTGATAAACTTTACAAATTAGAATGCCCGAAAATAAGATTTAAGAAATTGGGTTGATGATTGCTTTTGAACACGTGTTGAAATTTGATTACTTATAATTGAATGATGATGAGTCTCTTTTTGTTTTCCCTCTTAATGTTATCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCTGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAACGATGAAGGATGCTTCCATATCCATTGAACTCTCTTGATCTGCAAAATGGCACTTAACTTTATATACATGATTTAGGTTATTTCTTCATTGGAGGTTCGTTGTTCTCTTCCGTTGCTGATAACTTTTTTGTTCTGCGGAACTGTAGATTAGCCGCAGGTATTGAGTTGAGAATATCTGAATTGAGACAGTAGCATTTTTACAGGTACTACATGTATGATCTACTTTTCAACATATTTAGTCAAAACTATTTTATTTATATATATGTTTCGCCAATAAACATACTTTGCATTGCGTATTTGTTACTGATAAGCTTAGAGTTTGTTCTTGTCGTGTATGCTTTTGGATTAATTTCTAGTTAACCACACATTGACCTCTACGAATAGGTAAATCTGGATTCAAATATTGGAATATTTTATTTATGGTTAAAATACCAAATCTTTGTATTTTGAGTATCTTTTTTTCCATTTTTTTTATCTATATACTTAGCAATCACTCTTAAGGTCCTTGAAGACTCGATAAATCTTGAATTTATTATTTTAAGGTTATT

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCATTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCAGTTTTCTCATTTGAGACGTTGAAGTTTATTTGGTGTGTATGTAGTGTTAATCCACATTTACATAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCATAG

Protein sequence

MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKVSWDHFPVFSFETLKFIWCVCSVNPHLHKIPGSCIQCFSHVLA*

Homology

[Close]

BLAST of CsGy3G021980 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 26  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+AS  SF+ P        R  AEPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 144
           GLSKRTT+E L  AFA+FGEVA A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGK
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of CsGy3G021980 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-12
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 AHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 144
            H  +V D+V    KGF F++Y T E+A K I+GM GK
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of CsGy3G021980 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEV   RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGK 144
           + + E A+  I+ +DG+
Sbjct: 88  FTSSEAASSAIQALDGR 104

[Close]

BLAST of CsGy3G021980 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 75  AEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAA 134
           A+     FV GL+  T  E L +AFA FG+V  ++V+TDR TG S+GFGFV +++ +   
Sbjct: 4   ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63

Query: 135 KGIEGMDGK 144
             IE M+GK
Sbjct: 64  DAIENMNGK 72

[Close]

BLAST of CsGy3G021980 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 47  LSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVA 106
           LSG L    S SS      P ++    +   S+ LFV GLS  T    L +AF  FGEV 
Sbjct: 7   LSGILRQGVSQSS----NGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVT 66

Query: 107 HARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 144
            A V+ DR TG S+GFGFV ++  + A   I+ MDGK
Sbjct: 67  EATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99

[Close]

BLAST of CsGy3G021980 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 274 bits (700), Expect = 3.03e-91
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 256 bits (653), Expect = 4.21e-84
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEV HARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. NCBI nr
Match: KAA0063485.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (653), Expect = 1.28e-83
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEV HARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 253 bits (646), Expect = 4.73e-83
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TSTRTLPIISQ IHDWEK EPST  FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 238 bits (608), Expect = 2.88e-77
Identity = 125/143 (87.41%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TS RTLP+  QAIHD EKP P+T  F+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSA QRE  EPSTNLFVSGLSKRTTTEKLHE FAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 274 bits (700), Expect = 1.47e-91
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 2.04e-84
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEV HARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 6.20e-84
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEV HARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 1.39e-77
Identity = 125/143 (87.41%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TS RTLP+  QAIHD EKP P+T  F+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSA QRE  EPSTNLFVSGLSKRTTTEKLHE FAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 237 bits (605), Expect = 4.26e-77
Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAA APRSLR+LIT TS+RTLPIISQAI DWEK E ST  F+SGRLFSS S SSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGK 143
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of CsGy3G021980 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 26  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+AS  SF+ P        R  AEPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 144
           GLSKRTT+E L  AFA+FGEVA A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGK
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of CsGy3G021980 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-16
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           S  LFVSGLS+ TT EKL +AFA FG++  ARV+TDR +G SKGFGFV YAT+EDA K  
Sbjct: 33  SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92

Query: 138 EGMDGK 144
             M+ K
Sbjct: 93  AEMNAK 98

[Close]

BLAST of CsGy3G021980 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-13
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 AHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 144
            H  +V D+V    KGF F++Y T E+A K I+GM GK
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of CsGy3G021980 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-11
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEV   RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGK 144
           + + E A+  I+ +DG+
Sbjct: 88  FTSSEAASSAIQALDGR 104

[Close]

BLAST of CsGy3G021980 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 64.7 bits (156), Expect = 9.0e-11
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 47  LSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVA 106
           LSG L    S SS      P ++    +   S+ LFV GLS  T    L +AF  FGEV 
Sbjct: 7   LSGILRQGVSQSS----NGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVT 66

Query: 107 HARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 144
            A V+ DR TG S+GFGFV ++  + A   I+ MDGK
Sbjct: 67  EATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99

The following BLAST results are available for this feature:

BLAST of CsGy3G021980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.6e-28	62.18	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	3.6e-12	43.88	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FNR1	5.7e-10	41.56	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q99070	1.3e-09	44.93	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
Q9LIS2	1.3e-09	42.27	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CsGy3G021980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151968.1	3.03e-91	100.00	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5...	[more]
XP_008454580.1	4.21e-84	93.01	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
KAA0063485.1	1.28e-83	93.01	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycin...	[more]
XP_038896843.1	4.73e-83	93.01	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_022976594.1	2.88e-77	87.41	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of CsGy3G021980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD10	1.47e-91	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]
A0A1S3C066	2.04e-84	93.01	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3DR24	6.20e-84	93.01	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1INZ4	1.39e-77	87.41	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1FQV3	4.26e-77	88.81	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]

BLAST of CsGy3G021980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	1.1e-29	62.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	5.5e-16	62.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.5e-13	43.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	4.1e-11	41.56	glycine-rich RNA-binding protein 3	[more]
AT3G23830.1	9.0e-11	42.27	glycine-rich RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..154 e-value: 9.7E-20 score: 81.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..144 e-value: 4.9E-18 score: 64.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..143 score: 16.176081
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 53..152 e-value: 1.1E-23 score: 85.9
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..145
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..145
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 60..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021980.2	CsGy3G021980.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding