CsGy3G018860 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G018860
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA-directed RNA polymerase subunit alpha
LocationGy14Chr3: 14982841 .. 14997512 (+)
RNA-Seq ExpressionCsGy3G018860
SyntenyCsGy3G018860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATGATAATGTAGACAAGATGATGATGAGAGATGCTCATAGGAATTTGGAGGTTAGTTGAATTTCTCTATTTCTTTTTCTATTGTTTCTTATGACTAACATAATATCCATCACTTACAACAATATCACCCAAAAATTAGGGTTCAAAATCTTTCATATATTTGATTCAATACATGGATATATAAAGTTACGTCTAGAAAAACTATCTAATTCTGTAATACATAACCAAGAAGTAAGATAAACAAAATAAAAAAAAGAAATTATATTGTTACTAAAATCTAGGAAATTAATAAATAAAAATTAATCTTCATGAAGATTTGTCCCTGATATCGTGGATCATTCATTATTTTTCACATTCTTTGTCATTTTTTTACGTCTTCTTCTAGATTTTTTTTATCTCCTTTTTCATATTTTTAAACTACTTATCTTCACCATTTTTAGCAAAATCATTTGAAGCTACTTTATCTTCCTCGTATTCAAGAATATCAAAATAATTTAAATATCATTTTGACATTATGTAAACGATCCGATCGTTTATCATTGTCAACACGATCATTTACTATGATCAACACGATTTTAAATTTGAAACTCTTTTCCTATCGTTTAAAAAATAACTATACGATTGTATTGATATGATCTAAGCGATTGTGTACTAATATCTAAATGATCTTGTACCCAATATCATGTACCAAGAATAATTTAAATTTGGTACAAGATTGTGTATGAAGATCACTTAAAATTTGTATAAGATCGTGTACTAATATCTAAACGAACTTGTACCCAAGGTCGTGTATCACAATCATTTAGTTTTTGGTACAAGATCATGTACGTACTGTCGCGACGTGATCGCTACGCGGAGCGGCCGACCTCCCCGTTTATTTAATTTTAATAAATAGTTTTGGAGTCGCCACCAACCATATTAGGGTGTGATTGGTCACCCAAAAAAAGAAAAAAAAAATGGTCTGCGTACATTTAGAGATTTAAGTTCGGGAGTCAGTTGTGTGTAGGAAAGGTGTTAGCACCCTACAACACCCAAAAAAATGGTTACCCAATTTTATCTTTTAAATTAAATTATAGAGGTTCACAAAATAAAGTTTTTATTTAGGTTTTGTTTAAATGTCTCATGTTTATCAATTCATATCGAAGAAAGTAAAACCTAAGCATGAATTGATGATTATGGGTGGCATAGGAGCCATTAGAAAAATTAAGTTTATTTTTGTTTTAAAAGATTTTTATTCACCTTAAGAATATTAAGATACCAAAACTTGATATTTTAATCTCTATCATAGGTGTTTAATGAGAAATTTCATGTATCTAGAATGAAAACACTACTCAGTCTCATTTAAAATATGAAATGTGTTTATTTAAAAACAATCTATTAATTAAATTTCAAACGGAAAAATTTCATGTATTCATGGATTTTAAATTATAAAATCCATAAAAAACAATACTTTTTTTCCGATTTACATTTTTATATTTAAATTGAAAAATGAATAATAACAATGACAAAACATTATGAAATTTGAAAAATACTTAAAGGGTAATATGTTGAGATAAAATAAATGCATAAAACAAATACATGATAACGTAAGCAATACGCAAAATGTACAAGATAATTAATTAATACAGCACATGCAAGATAATTAATTAATGCAGAATGATGCAAAGTAATTAATTAATTCAAAACATGTAAAATAATTAATTAATTCAAAAGGATGCAAAATAATTAATTAATTCAAAACGATGCAAAATGATTAATTAATACAAAAAGGTGAAAAATAATTAATTAATGCAGAAATAGGCAAATTAATTAATTAATTCAGAAATATGCAAAATAATTAATTAATTCAGAGATATGCAAAATAATTAATTATGCTTAGACCAGAGTAATAAATAATTACTTGAGGATGTCAAATGAGTGAAATAATAATTAATTGCAGAGTGTCAAAGTAGGTTTAATGCAAGATGCCAATAAATAATCACAGTAGCCAATGGATGTCAAATAGTTTTAGTGATTAATTAATTAATACAGAATACAAATAATTTGAATGAGTAATTGACATAAGAGACCAAATGAGTGTCAAAATAATTAACGATATGCAAATAATTAGCTCACAATGGAGGATGTCAAAAATTAAAACTGTCAAATACATTGTGCTAATTAATTAACCATGCATAATTAAAAGAGTATGCCAAATGAATAGTTATTTTCAAATGCATAATTAACATATATGCCAAATGGATAATTATTAAACCAAGATACCAAATAGATACACACAATTAACACAGAATGTAAAATGGGTGCTTAGATAATTAAAAAGATAGCAAATAATTAAATCAGTATGCCAAATGAGTGTCAAATAAGTGTTAAATAATTAAGACATCAATCAAATAATTAACACATCATTTAATTAATTAACCAAATGAAATAATTAACATAGCACCCAAATGGATGCCAAATAATTAATCAAGAACACACTTATTAATTAAGGCAGTAGCCAAATAGATGCAAAACAACTAATTAATCACCTCAGCAAATAGTCAAAATGGGTGTCAAATTAATTAGCATGCAGAACTCAGCAATCAAAATACTCCAATGGCCAAATGGATGTCAAATAATTAACGAGGATGCAGAAAATTAACATAGACCAAATAATTAACATAGCATTGACGGTATGCTAATTAATTAACCAAATAATTAATGCCAAATCAGATAATTAACTCACAACAGCCAAATAATTAAACGGATGCAGAACTCATCCATCAAAATAGTCAAATGGCCAAATAGATGTGCAGAAATAAGTGTAATCAGATGCAAAACACTAATTAATTAGGACAGCAATCAAAGAGTCAAATGGGTGCCAAATAATTCAAATGATGCAAATAATTAAAAGATGTGAAATGAGTGCCCAATGATTAACACACCAGCTAATTAATGAGTGCCAAATGATTAACACCAGCTAATTAATGAGTGCCAAATGATTAACACATCAGCTAATTAATGAGTGATTTAAATGAATAATTAAGACAGCACCCAGATGGGTGCCAAATAATTACTGGGTGCCAAATAATTAAGCCAGTATCATCAAACATGAATAATAAAAAAAAACTTACAAGGTCTGCCTTAAATGCAAAATGTTCTGGGTTGATCCTCCTCACCTCTTCCAAAAAAAAATAATCTTTTACGTGTCCCTCTTCTCTACCAAATAATTCTCCAGCAAAAAAAATTCTCCCCCCATTTTGAATCTTCTCCTTCTCTTTTTATAGGGAAATGTCTCCTTTTTTAGATAGAAGTGAAGTAGGTTTAGATAGTGAAATGGAGTACAGAGAAATGTGGAAGAGTGGGAGAACGTGAGAGATTGGGGAAGAAGGTGGAAGAAGAGAAATGTGGAAGAGTGGGAGAACGTGAGAGATTGGAGAAGAAGGTGGAAGAGTGGGAGAACGTGAGAAAGTGGGAGGATTGTGACTCAAGAAAACAAGGGATGGTTGAGAAAAATAGGGAGAAGAAAAAAAAAACCTTTACTTTTAAATTTAATTTTAAATATGTTTTTATTTTTGTTTTTGTTTTAAAACATAAATTTAAAAATTAAGATTTAAATTTAAATTCAAATTCAAATTCTTTTAAAAAAGTAATAAATAAATTAATGAAAAAAATAAAAGGCAGGACAAAATACGGTATCTACACGTACCAAACTTAGTACCAAGACCATTTCGATCTTGACAAGATCGTTTAGCTATTGGTACAAGATCGTCTAAAGAAAGACTACACGCACAAATGTAATCAATTAATCGTATTGACTGAAATATTTTACTGGTGTGTTACAATTTTTTAAAAGAACTTAAATTAAACCATTAAATATTTTTCCCTTCTAATAGTTGAAAGAGGAAATATTTCTAATAGTTCAATAAGAAAATATGCGTCATAGAATTGCACTTGCAAAGTTTGAAAGAAGTATTTAGTTTGCTAAACTTAATTTTATATTTATTTTTCATTAAATCTTTCTCAACCATTTTTATTTTGCCATTCATATATTTTCATGTATTCTTTTTTCTTTATGGAGCTTTTATATATATATATATATAGGAGTTGTTTTTGTTCGATTTATTAAAGAAAATTTGAGAAAAAAATCTTGATTTGAACTTTTGTTGTTAAAAATTAATATTTATCGCTATATTACTAACTTTGGGTCAATAATATATGGTTCCAAATTACTCTTTGTACACTCAGAAGTGTTTTCAATTTTCATTTTTCTAAAAAGTGATTTGGTTTATTTGCCAAACACATGCCTACCTTAGTAGAAAAAGTGATTTTGTTGAAGCCAAAATCATTGTAAGGGTGTCCTTGGAAGTAATAATTAGGATAGTAATTTAGAAAAAGAGATTTAATTACTATTGATTTTGTTTAACAAATCAAATTTAGGTTTAATATAAAATTATTTTTATATATTTAGAATTGATTTTCAATTATTATATTTAGCTTTCAAAGTTAATTAGAGTTATTCAAAATTGTATTTTTTATTTCAGATAATTATTTTGTTAAATAATTATGTTAAATGTCTATTTATCACGCCTCAGTCCATAATTCGTAGCATGATCGAAATTCAAATTCGACAGACATTCTCTTACGGCCGTGCCCTCTACGATCTGACTACGTCATACTCATTTGTCTTAAATGCTCTAAAGAGTGAAAATTATTACTACAAGCCAACATGGGTTCTTTCAGCATGTTTTATTTCCGCTCACATGTGTTCTAGAAAAATTCCTAACAGGTCACCCTATATATAATTATTCTTAACTTTTGAGTTTTTATGAGTGAACCACTTGAAAGGAAGATGCACTTGGTTAATATAGGTAATAACTTCAATTATTTTAAGCCTTTCTTATCATGTTTTTATATCATCAAGATTTCTGTTATTCGAATATGATCTCTGTTCATTTATGCTTTCTTCTAAATCTTGGAGCGTTACACTATTTCTATTTATATTATTATTAAATTCTTATATGTGTAGTTTATTCTTAATATACATGAGGTGAATATGTTTATAATAGACCTTAAAAGAAAATTCAAAACATATATAAGTTATGACAAACTCATATCTTGTTCTAATATTTAGAATTAAGAAAATGAATCTAAAAATAGCTAACCAACCATGTTTTATACAAAAACTAGGTTATCAATTTTATCTCATACATCTCAAATATTAAGTGATTTTGATGAGAAAAAGAAAAAAATTTTACCATTTCAAAATCACACTCAAAGACGCCTAATTGTTATTATGAGGTGTCTATCCGTTGACACACTTTCCTTAATTCAACTTTTCATCTTTTAAAAATTTTGCTTGATGTCTTACCTCAATTTAGCTCTTAGACTATCTCCAAATTACTTTGTCTAATATTTATAATTTAAAAATCAATAAAATTTATAATGTCAATCATTTTTATTTCACCCTACCAAATTTGGCAGCCATATCACATGACATATTTAAGATAGGAAAATGGCCTACCATAACCTTTTGAGAATATAATATAATAATTCTAGCAATTTGTTTTAAAAATTTACAAGTATGACAAAATTTTCACTCGTAATTATTTCTAAACTACCATTCAATGACTTATTTATCTTCATCTTTTTAATGTCCTACTCATTATTTATTTATTCTTCCACTTTTTAAGGCCCTAATTATTTTTTTATTTTTATACTAAAAAAATTATTTATTCTTTCGGTCTTAATCTTAATTTTAAAATATCAATAGTACAATAATTGTAATATAAAATATAATACGATTGTTGATCAGAGTAATTTAATTTCATTTGTGATTTTTTTTACTTTCTTCGATGTGTATTTTGAGTTAAATATGATTCCAAATGATTTTGTTTTATTTTTTTACATTAATTTTTTGGTTTTATTTTGTCTCAGTTTCGTATATCAGTGTTGTGATATACTTATATTATATGTATTAGTTGGTTAATATACTTATTATGTGATTTTCGTTTTTTTCAAATTTTATGCAATTCATTAGAGTATTATTAATTATATGAATGATGTAACTCAGTATATCATTATCAAGTATATCAACAATATATTGTTAAAACATATCAGTAAAATGAATCATTATCAAGTTTATAAGTGTATATCAATTGTATAAGTGGGACTTCAAGCATATCAAGTGCATTTAATCAATCAATTGTATAAGTGAAGAATACTAAATGTATCTGCAGTATATCAGGTGTATCAAACATATATTAGTAGTGTTTCAGGTGTGTATCAAAAGAGTATCAGGTGTATCAATCAAATGTATCGTGTATATCAAGAAGTATATAGGTGTATCAAGGGGTGTATTAGGTGTATCAGATGTGTATAAGGTGTATCAAACTTATATTAGTAATGATGGCATTTGTGACATTTTACCTCTTGATGTGTCGGCTGGGCTTCGTTTTCCATTTTCGCAAATAATAAAATGTGTGTGCTATGAACTTAATTATTATAACCTATTTTGCTATCTTTCCAAGTTACTCTTCAATATAATCAAATAAAGCATATATATTATTTTACCAATTATCTATTGCATTGCTTTCTTATTTTACATTTTAACATTAATTACTAGTATTTATAAATAATAACAAAATATGAATGTGTGATTTTTGAAATGAAAAACAAAAAATCTATTTATAGAAAAAGCTATTGGACGTATGCAATCAATATATAATTATTGATGATGAGGCAACCGGATATTGTACTTAAAAAAATAGAAAAGAAGAATTATTGATGTGATTCATGGAAGCATGTTGGACAACTCATCCTTTCACCTAATCAATTTCGGTGGCCCTATATGGACCATAATAACTTTCATCCAAAATAATTGATGTAAATACATGCATAAATGTGAAGAATACAATTCTTCTTTTTCTTTTCTTTTTTTGCTACTTTAAATATATAAAGACATTATGAACTAAAATATTCATCTAATATAGTAAATCTAATATAGTAAAATATTACCGTTTTTACCTAGATGATTTGCATAGACTATTATATGTGTCCATATTTTCACGATATATTACAAATAAAATAGCTACTTTTATTAACATTTTCACAAGTTTTATTATCTCACATAATTTGGTTTTTGTTTTTGTAAGGTCCATTCATAACAAATTCATTCTTTTTATGTGGAATAAATGAAAATGAATGTTCAAAACATTTTTCACCAATTTGTCTTAAGAGACAATATGAATTATTGTCATGGATGCTTTTTTGTTGTTTGTATTCTTCTATAATTTTCCTTTACAAAATTGAAATTTACTTGTACTTTTTCAATTATCTATTTTATATACAGTTATTCCTACATTGTAAAGGGAATATAATTGTTAGTTTGGTTATGAATTTAACCTATATTCCAAAACGCAATATTATCAAGTTTTGAAATTTGTGTTTAAATTTTTTAAAGATTTATGAAGTTATTAGACACAAAAAAATAAATATGTAAAGTCCTGTTTTTTTTTTGAATGTATATTTTGTTGTAGATAAAAACAAACAAAAATATATATTGATAACTATACAGTCTGTACTTCATAATAAAACTTGTGGTCACAAATTTAAAATATGAAGACATTATTGTTTTGAGAAAAGAAAATAGAAATTCTAGAACGATCTCCCAATTATTTAGTCTACAGTCTCACCATCTTTTGGGGTCACGATATGTATTAATGAGAATCAATCTCTTGGCCGAATTTATTTATTTATTAAAATATAAGATCCCATTTGATTTGATGTGATGATGTGTTTATTAATAATAGTTTTGATGATATTAAAAAAATTGATCTTATGAGATCTCTTACACAATTTAGAAATGAAATCTATGAATTGTTTAAAGGGACAGTCAAATGCGATATAATAATAACAATACAAAGGGATAATTTAAAATTACTTAATGGCATGTATTATGATCACATTCATAACGATCCAAATAAAATAAATGCTTTGGTATTAGACTTTGCTTTTAGTTATTAAATACTTTTGAATATATGATAACTAAGTAAGATTTTTTTTAAAAAAAATTAAGAAGTCATTATCTACCCCTCAATACTTTTAATCAATTAATTTGGTTGAAAACACTTTTAAATAAGGATTTTTTTTAAAAAAATAACAAAACATTAAAATATTTATATTCTATTAAATAATTTAAAAAACGCAAAAAAACTCACGGGCCTACAATGAAAAATACAAAAAATGTCTCGTGATTATTTGGCATCCTGAATGCGTAATATATTTGAAAAACGATCGTTTAAATTTGACTATTTTTTGTTATGCGATCGTTTAGATTTGACTACCAAAATTTAAACGATTTTTTTTTTTAATTTTTGGTACACAATCATTTATATTTGACTATTTTTGGTACGCAATCATTTATATTTGACTATTTTTGGTACATGATCATTTATATTTAGTACACAATTGTTTAGATTTGATCGTTTAAATTTGACTATCTAAATCTAAACGACTTTTTTTAAGATTATTTGTTACAGAATTGTTTGGATTTGATTTTCTTTTTTTGTAGACGATCCAAATCTAAATGACATTTTTAATTTTTTTTTTTATATTTGGTAGACGAATTTAAACAACTAACCGTTTGGAAAAAAAATTAGTTCTTTTATATTTGGTACACGGTCTTGAACCAAATAATAGTTTGAAAAAAAATAAAAGAAAAATGGTAGAAGAAGAAAGAAAATGGCAGAAGAAGAAAGAAAAATGACAGAAGAAGAGAAGAAAAATGACAGAAGAAGAGAAGAAAGACGATGAAGAGAAAAAAATCGCATAAGAGAAAGAGAAGAAAAACGATGAAAAGGAAGGAAAAATATGAAATATTTTAAAAGAATGACCAACTTAATGAGTTTTTTTCATTTTGTTACACGAGCTATAAATATTTTGACTTTTTTGTTATATTTATGAAAATATAATAATTTTTTTTTGTTATATTTGATTATCCCTTAGATTTAGATAGCCAAATTTAAACAATCAAATCTAAACAATCGTGTACCAAATCTAAACGACCGTGTACTAAATTTTTTTAAAATAAAATCGTTGAGATTTGACTTTCAAGATTCAAACTATCAAATCTAAACGATCGTGTATCAAATTTAAATGTTATTCTACCAAAAAAGTTTGAAAAAAATTGTTTAGAGTTGATTATCCAAATTTAAACGATTAAATCTAAATGACTTTCTACCAAAAAAATTTTAAAAAAATTGTTTAGATTTGACTATCAAAATTTAAACTATAAAATCTAAACGATATTGTACCAAAAAATCTTGAAAAAAAATCATTTAGATTTGACTACCCAAATTTAAACAATCAAATCTAAATGCCCGTGTACCAAAAATAGTCAAATCTAAACGATCGTGTACAAAAAATTCTTGAAAAAAAATAGTTTATATTTGGGTACCCAAATCCCAAATCGAAACGATGGTGTACCGCAGAATAGCCAAATCTAAACGACCGTTTACCGAATATATGACACGCACTGGGTGCCAATTAAATGATAAGTCATCTTTGTATTTTCCATGGTGAGGCTGTGGGCTTTCTTCATTTTTGAAAATTTTCTATAGAGTGTAAATATTTTAGCGTTTGTTATATTTTTTAAAGGATCATTTTTTAAAAAAGATATTGCTATATTTTATAAATAGTTTCAACTTTTTTTTTCTATTGTTAATTTTCATAAATATAACAAAACACCAAAATAGTTATGACATGTGTAACAAATAAAAAATCATATGATATTATCATAAATTTCAGGTTTGCCGTTGAATAATGCAGATCAGTTTTCACTTCTTTTTCTGCTTCTTCTTTGCAATTTATTTCATCCCCTCTTCATATTATTAACTTCTTCAGATTATTACTTCTTATTCATTATACAATATTATGGTTATTTATGTAAATATTTACCAATTTCTTCATTTTCTCTTTAGAAATTTTTTCTTCATCATTTCTCATCTCTTTTTTTTCTTCTTGGTACAAGATCTAAATGATATTGGTACAAAATCTAAACGATCAGTTGTCTATCCTAGATAGATAAAGATAGACCATTATCACTAATAGATCGTTTAGACTGGATACAATATCGTTTAGACGGTACAAGGGTACAAGATAGTTTAGGCTGGGTACAAGCATATAAGAACGTTTAGACTAGGTAGAAGGGTACAAAAATCGTTTAGACTTGGTACAAGGGTACGAGATTATTTAGGCTTGCTACAAGATTATTTAGGCTTGCTACGAGATCGTTTAAACTTCCTACAAAATTGTTTAGACTTGCTACAAGATTGTTTAGACTTACTACGAGATCATTGCTCCAAGATCGTAGCTATGAGATTGTTTACTCTACAAGAAATCAGAGAATTCTTGACGCCACAGATCATCAGCAAAAATAGCAAAGTGTATTAACTAAGGTTTTTCCAACATCGAATTCTCCATTGGGTAGAACGTCGGGAGTACTATGTTGGGGCAACTTTTATCGACGCGCTAAAGGGACGATGTCGACATCCTCTTTATTCTCGACGTAGTCCATGCCGATGTGTAGACGACGTCGGTAGTGGAATAAGTCTGACGTCACCTCCGCATATCGGGGAAAGGGCAATCCCGATGACACATCGAGAGAAGTTTTCCTCGACGTCATCTCTGTGCATTGGGGGAAACACATGATCCCGACGTAGTTTATACCTCGAGATAAATTTATTTTTTATTATTTTATTATTATTATTATTTTAGTATTGTTTTTGGTTCCACTTCAGAAGGCAATAAACAAAATTTACAACAAATTATTAAAATTAAAAATTTATAATTTATAATTTATAAAACAAAATACAAAATCTGTATAACAAAAATTACAATTAAGCTATTCAAATTGTTCAAAACAATTACATTAATTAAAATAAAAAACTACACTTATATTCTAAAACATAGTTGCAGATGCCCAAAGAAAGAATGTCAAACCTACATATCACATAAAAGTACAGTTAGATATATATCACTGATAAGAAACTAAACAAATTAAATGTTGAAAAATATGTACCCCAAATGTTCATGGTCCCCTCTGTGCCCGACTCATTTTCTTAATCATCTTCCTCATCTCTTCAACTTGTCCTGCATAAATTTCTCCTATTTTTTCAATAGTCCCTTCCATTTGTTGGTCACGGTTTACCATTTGTTGTCACACTCCTCCTCCCTTATTTGTTGTTCTTCAATGAATCGGTTAGCATTTTCAAGGCTAGCTTTTAGTTCGCTAGCCTCTCTATTGTACATCCCTTGGTCATAGGAGGAGGAAGAACTGGAAGCAGAACTCTTTGGAGACTTGGGCTTGGGGCCCCAACCAAGATCTTTTGAAAGCCTTTTTTGAAAATTTGGAAGAAACAATTTTTTAAAAAAAGATAAAGAGAAAATATGGCTGAAACAAATTTTAGAATAAAAGGAAAAATAATAACACTTTCGATATTTGAAACAAATTTTAAAATAAAAGGAAAAATAATAACACTTTCGATATTAGCCAACTAATGGACCACATCGTACTTCTTTTTCAAAAAATAGCCAACTGTTTTCTTTCGATATTAGCCACGCTTTTTAAACTGAACAACATGAATCTGGAACAGTTTGTTTTGGTTTACGGTTCGAACATACTCATACTAGTAACATATTGTTGATCCATAAGTTCATTTTACATAATTATATGTTAGAAGTACGTAAATATTTATATTAATGTATGCATTTAAGGTATACTAGCATTACAGTGCTAAAAATAGATCATGAGGTTCGTAGGCGCTACCCTGAAATGGATAATCAAAACATTCGCACTATACTAGCTGTCTTCACATCCACCCATAATCAGTTAATACTGCTATTAGATCCACTAATGAATGACAATAAGCGGGTGACCCATATACCGTACGTATTTAGGCATCAAATTAGAGATCTTTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTTTCGTGAAAGTACCAGAATGGACAGACGAACTTTACGAGAACACTTCCAGAATTTGTATCTCGAAAGATGAACAAGTGTAGACACTAGGTGTCGAAAGGTTGTTGTCCTTAATTGCGAAGTTCTATACTATTTATAAGTGATTTCTTCTAGATATACCTCACCTAATCATACTTAGTCATATGGATCCCAAGAGGTGACTATATGTGGTGTATAATGACTTCGAGAGAAGCACGCCTTAATCATAACCATGGTTGAGTAAGTTATATTGTATCAAGGTTACCACATTACTTAATCACATGATAATACATAGACATTCCTTCACTCACTTCTCGGATACAAGTTAGTTCACATCTCAATTTCACCATCTTATTCCCCCTTTACAGACTCTATAGGACTAGTTTAGTAATTTAGCTTAGTCTCGCATTCTTTACATTTCTTATTCTTTAATTATTTTATACAAAATAGAAGATGTGTAATTCCTAGAACTAATGTCTTGAATCAATTTCCTGTTTTCGACCCTGGATCATCGAGGTAAATCTATTGTTTCACTTGCACTTGGACAAGTAGTAGGAAAACTTGTACTCAATGAGAACTTAGTTACTATGCATATCGCATGTAGTGAATATGCTTAGTGACGTATCATCTAGACTAAAATATAAACTCAACACACTTCACATACTGAGACTGAGTGAATTAAGTGATCACTCAATGAATCCCCAACCACAAGTGTAATAAAAAGTTTTCATAAACTTACTAGTTCTACTAGCGTGCGTTTCTCGGAACAACTCGACACGATCTATCAGACGACCACGTTCTTCAGTGAGCTCGTGTTGTCGTTGAAGGAACGACTTGGATCCACTCCTGTGGTTGTAAGGTTCCTTTGCTTTAGCAGTTTTGTTGACCCTTATTGCTCCTACATTCAAACAATGATCAAAACGTTACATCCAAACAACAAAAATGAAGCACTGTTAAATGAAATTAAAGTAGACGATATAAATAACCTGAAGTTATTGAGTCCTGCAATTATCACAACGAAAGTCCCAATCTTGCTCGATTCACCAATCTCGACTGTGGGTTTGCGCGTGCTTCTTCAGAGTCATTGTAATGCTTGCAATGTCGATGGTTGTCTCCTTTGAATTTTTTCCACTTGCTGAGCATTCGATGCTCAACAAAATAAGTAAATGCTTGATCTTCAAAATCGAGCCGAACCATTGCTACAAAAGAATAATACATAAGAATTAGTCTTCTACATATGTAGGTTCAACATATATTTTAAATAAATTACAAACTTACCTGTAGGCCGCCCTTGACAACCTCGACGTACTCTGAAAGTACATAGACCCACTTGAGATTCTGGATCGAAAACTTATCTCAGGTTAACACATCGATCATGCAAATGAAACAAACAACATGTGGCGAGATAGACTTGTCCCCTCCTTGGGGGATTGAAAAGAGGATCTTCCCATTTTGTTGTACACACCTTTCCAACTCCAAGTTCTGGGATTCCTAACGTCTCCTCGGAATGGGAGTGGGTTGAGGGGAATATATGAAAAATACACACTATCATATTCAGAAACTTAATTACTGATTCAAGTGTTTATGTAACGAGACTAACCTGAAGTGTCACCCACTAAAGACAATCCTCCCGCATTATCTAGTAGGTCAAAGTTTAGGAAAATATCTGCTTCATGAATACCACTCGGAAATGACATAATTCCTGTAGACATAAAAATCAACAAGCTTTAAACAAATGTAAGTATCACAAACTAAATATATAAAAGAATGACTAATGTGTATACGTGAAGAAGACAATTTTATTCATCATCGCTTGATCCACTTTAAGGTGATGATAATTGTTCACCACCATCGTCTATGAAGTCGTCCACGACATGAAGCACATCCGTCCACGACATGATGTTGTGTCATCGAACTGGGTTAACAATGTTATGTCTTCCTACTATCTCTACTTATTGTTCTTATTGCTGTTTCTGTTGCTGTTAATTGTGGGTTCATCTGAATTCACTACTGTCGATTCTTTCACAGTTTTGTCAAAATTATTGATTTCTCTTCCTCTAATTTTTAAAACCCTTGTGCCCATAGGGGAATAACTAATCCTGCTCTTCGTTTTCTCATACAAATTGCTCTCCTTTATCAGCTTGTCTCATTCTCCTCTATCTCACTGTCTCAATCTCCTCTATCTCATTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAATGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATACATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATAATTTTAGCATAGTTTTACTTGCTAGAGTGAAGATAAGAAGAACGAAAAAAAAAAAAAAAACAAGAAAAAAGAACAAATTTAAGCGCCGAGCAAAAGAACAGAAAGAGAGAAGAAAAGGAAATACTTTTATAAACGTAAAGATATAA

mRNA sequence

ATGAAGAATGATAATGTAGACAAGATGATGATGAGAGATGCTCATAGGAATTTGGAGATGATTTGCATAGACTATTATATCTTGTCTCATTCTCCTCTATCTCACTGTCTCAATCTCCTCTATCTCATTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAATGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATACATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATAATTTTAGCATAGTTTTACTTGCTAGAGTGAAGATAAGAAGAACGAAAAAAAAAAAAAAAACAAGAAAAAAGAACAAATTTAAGCGCCGAGCAAAAGAACAGAAAGAGAGAAGAAAAGGAAATACTTTTATAAACGTAAAGATATAA

Coding sequence (CDS)

ATGAAGAATGATAATGTAGACAAGATGATGATGAGAGATGCTCATAGGAATTTGGAGATGATTTGCATAGACTATTATATCTTGTCTCATTCTCCTCTATCTCACTGTCTCAATCTCCTCTATCTCATTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAATGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATACATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATAATTTTAGCATAGTTTTACTTGCTAGAGTGAAGATAAGAAGAACGAAAAAAAAAAAAAAAACAAGAAAAAAGAACAAATTTAAGCGCCGAGCAAAAGAACAGAAAGAGAGAAGAAAAGGAAATACTTTTATAAACGTAAAGATATAA

Protein sequence

MKNDNVDKMMMRDAHRNLEMICIDYYILSHSPLSHCLNLLYLIVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFSIVLLARVKIRRTKKKKKTRKKNKFKRRAKEQKERRKGNTFINVKI*
Homology
[Close]
BLAST of CsGy3G018860 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.3e-56
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 42  LIVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD 101
           + VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD
Sbjct: 108 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD 167

Query: 102 ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS--IVLLAR 161
           ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S  ++ L  
Sbjct: 168 ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 227

Query: 162 VKIRRTKKKKKTRKKNKFKR 180
             +   ++K+    KN  K+
Sbjct: 228 PFLHAEEEKENFHLKNNKKK 247

[Close]
BLAST of CsGy3G018860 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-51
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 0 

Query: 42  LIVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD 101
           + VKGPGCVTAQDI+LPPSVEI+DNTQHIA+LMEPI+LCI L+IERNRGYHI++PNNFQD
Sbjct: 108 ICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQD 167

Query: 102 ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 154
            SYP+DA+FMPVRN NHSIHSY N NEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 168 GSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 0 

Query: 42  LIVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD 101
           + VKGPGCVTAQDIILP SVEIVDNTQ+IANL EPINLCI L+IERNRGYHI+TP NFQD
Sbjct: 108 ICVKGPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQD 167

Query: 102 ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 154
            SYP+DA+FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 168 GSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-51
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 0 

Query: 42  LIVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD 101
           + VKGPG VTAQDIILPPSVEIVDNTQHIANL EPI LCIEL+IERNRGY I+TPNNFQ+
Sbjct: 108 ICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQN 167

Query: 102 ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 154
            SYP+DA+FMPVRN NHSIHSYVNGNE QEILFLEIWTNGSLTPKEALH  S
Sbjct: 168 GSYPIDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-50
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 45  KGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASY 104
           KGPG VTAQDIILPPSVEIVDNTQHIAN+ EP+NLCIELKIERNRGY I+T  NFQD SY
Sbjct: 111 KGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSY 170

Query: 105 PMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 154
           P+DA FMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+  S
Sbjct: 171 PIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS 219

[Close]
BLAST of CsGy3G018860 vs. NCBI nr
Match: KAE8650528.1 (hypothetical protein Csa_010611 [Cucumis sativus])

HSP 1 Score: 233 bits (593), Expect = 1.95e-75
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 1   MKNDNVDKMMMRDAHRNLEMICIDYYILSHSPLSHCLNLLYLIVKGPGCVTAQDIILPPS 60
           MKNDNVDKMMMRDAHRNLE+I IDYY+LSHSPLSHCLNLLYLIVKGPGCVTAQDIILPPS
Sbjct: 1   MKNDNVDKMMMRDAHRNLEIIWIDYYLLSHSPLSHCLNLLYLIVKGPGCVTAQDIILPPS 60

Query: 61  VEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRN 115
           VEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRN
Sbjct: 61  VEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRN 115

[Close]
BLAST of CsGy3G018860 vs. NCBI nr
Match: YP_009004075.1 (RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha subunit [Cucumis sativus] >Q4VZK3.1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha [Cucumis sativus] >ALF03334.1 RNA polymerase alpha subunit [Cucumis sativus var. hardwickii] >AVE15363.1 RpoA [Cucumis sativus var. sativus] >AAZ94682.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI97448.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI98777.1 RNA polymerase alpha subunit [Cucumis sativus])

HSP 1 Score: 226 bits (576), Expect = 5.42e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. NCBI nr
Match: YP_009346515.1 (RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alpha subunit [Cucumis x hytivus] >QCY72874.1 RpoA [Cucumis hystrix])

HSP 1 Score: 226 bits (576), Expect = 5.42e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. NCBI nr
Match: QHB75996.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo])

HSP 1 Score: 224 bits (570), Expect = 4.11e-69
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. NCBI nr
Match: YP_004841815.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA polymerase alpha subunit [Cucumis melo subsp. agrestis] >ASY96605.1 RNA polymerase alpha subunit [Cucumis melo var. conomon] >ASY96692.1 RNA polymerase alpha subunit [Cucumis melo var. makuwa] >ASY96779.1 RNA polymerase alpha subunit [Cucumis melo var. momordica] >ASY96866.1 RNA polymerase alpha subunit [Cucumis melo var. dudaim] >ASY96953.1 RNA polymerase alpha subunit [Cucumis melo var. cantalupo] >ASY97127.1 RNA polymerase alpha subunit [Cucumis melo var. inodorus] >ASY97301.1 RNA polymerase alpha subunit [Cucumis melo var. flexuosus] >QRW36587.1 RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 222 bits (566), Expect = 1.75e-68
Identity = 106/110 (96.36%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANL EPIN CIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy TrEMBL
Match: A0A218KG62 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoA PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 2.62e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy TrEMBL
Match: A0A1X9Q1P4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 2.62e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy TrEMBL
Match: A0A1P8C7R7 (DNA-directed RNA polymerase subunit alpha OS=Cucumis x hytivus OX=442738 GN=rpoA PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 2.62e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy TrEMBL
Match: W8E706 (DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 2.62e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. ExPASy TrEMBL
Match: A0A4Y5RDR4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 2.62e-70
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 44  VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 103
           VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS
Sbjct: 110 VKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDAS 169

Query: 104 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 153
           YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 170 YPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of CsGy3G018860 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 189.5 bits (480), Expect = 2.6e-48
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0 

Query: 42  LIVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQD 101
           + V+GPG +TA+DIILPP+VEI+DNTQHIA L EPI+LCIELKIERNRGY ++  NNF+D
Sbjct: 108 ICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED 167

Query: 102 ASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHNFS 154
            SYP+DA+FMPV N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH  S
Sbjct: 168 RSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 219

The following BLAST results are available for this feature:
BLAST of CsGy3G018860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK34.3e-5680.71DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=... [more]
Q9MTJ31.1e-5183.93DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=8... [more]
Q49KW61.4e-5185.71DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus... [more]
Q09WY51.9e-5185.71DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3... [more]
Q2PMQ32.1e-5087.16DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV... [more]
BLAST of CsGy3G018860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650528.11.95e-7597.39hypothetical protein Csa_010611 [Cucumis sativus][more]
YP_009004075.15.42e-7098.18RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha... [more]
YP_009346515.15.42e-7098.18RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alph... [more]
QHB75996.14.11e-6997.27RNA polymerase alpha subunit [Cucumis melo subsp. melo][more]
YP_004841815.11.75e-6896.36RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA poly... [more]
BLAST of CsGy3G018860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG622.62e-7098.18DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=... [more]
A0A1X9Q1P42.62e-7098.18DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=... [more]
A0A1P8C7R72.62e-7098.18DNA-directed RNA polymerase subunit alpha OS=Cucumis x hytivus OX=442738 GN=rpoA... [more]
W8E7062.62e-7098.18DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA P... [more]
A0A4Y5RDR42.62e-7098.18DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA P... [more]
BLAST of CsGy3G018860 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00740.12.6e-4877.68RNA polymerase subunit alpha [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..192
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 35..92
e-value: 1.5E-8
score: 35.0
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 93..150
e-value: 5.0E-4
score: 20.4
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 60..163
e-value: 1.9E-18
score: 68.2
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 112..151
IPR011773DNA-directed RNA polymerase, alpha subunitPANTHERPTHR32108DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 40..194
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 17..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G018860.2CsGy3G018860.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity