CsGy3G017960 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G017960
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	homeobox protein HAT3.1 isoform X2
Location	Gy14Chr3: 14088363 .. 14088614 (+)
RNA-Seq Expression	CsGy3G017960
Synteny	CsGy3G017960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

mRNA sequence

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Coding sequence (CDS)

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Protein sequence

MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKFLTPFFQPKLH*

Homology

[Close]

BLAST of CsGy3G017960 vs. NCBI nr
Match: KGN57486.1 (hypothetical protein Csa_010932 [Cucumis sativus])

HSP 1 Score: 169 bits (427), Expect = 1.00e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 83
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

[Close]

BLAST of CsGy3G017960 vs. NCBI nr
Match: XP_022149327.1 (homeobox protein HAT3.1 isoform X2 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.25e-12
Identity = 45/72 (62.50%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 6  WRRARN--ETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRR 65
          WRRA      RN+   GGSGRQTVRVKA +NA + NGGPDLEDSETKPLYSLF LRT+  
Sbjct: 17 WRRAPALAPARNMC--GGSGRQTVRVKAGRNAAACNGGPDLEDSETKPLYSLFALRTRTA 76

Query: 66 TEQQTTIIAKFL 74
          T      I K L
Sbjct: 77 TTTTRRTIDKIL 86

[Close]

BLAST of CsGy3G017960 vs. ExPASy TrEMBL
Match: A0A0A0LBT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 4.85e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 83
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

[Close]

BLAST of CsGy3G017960 vs. ExPASy TrEMBL
Match: A0A6J1D7M5 (homeobox protein HAT3.1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017765 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.03e-13
Identity = 45/72 (62.50%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 6  WRRARN--ETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRR 65
          WRRA      RN+   GGSGRQTVRVKA +NA + NGGPDLEDSETKPLYSLF LRT+  
Sbjct: 17 WRRAPALAPARNMC--GGSGRQTVRVKAGRNAAACNGGPDLEDSETKPLYSLFALRTRTA 76

Query: 66 TEQQTTIIAKFL 74
          T      I K L
Sbjct: 77 TTTTRRTIDKIL 86

The following BLAST results are available for this feature:

BLAST of CsGy3G017960 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G017960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57486.1	1.00e-52	100.00	hypothetical protein Csa_010932 [Cucumis sativus]	[more]
XP_022149327.1	1.25e-12	62.50	homeobox protein HAT3.1 isoform X2 [Momordica charantia]	[more]

BLAST of CsGy3G017960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBT3	4.85e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1	[more]
A0A6J1D7M5	6.03e-13	62.50	homeobox protein HAT3.1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101776...	[more]

BLAST of CsGy3G017960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017960.1	CsGy3G017960.1	mRNA