CsGy3G017640 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G017640
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 13568501 .. 13568912 (-)
RNA-Seq Expression	CsGy3G017640
Synteny	CsGy3G017640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATTATCGATTAAACCCAGTTTACTCCTCCAAATGCTTACCCAAAATTTTCACTTCACATCCTGGATGGAAAACCACAAATCGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTACATTTAGTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

mRNA sequence

CAAAATTATCGATTAAACCCAGTTTACTCCTCCAAATGCTTACCCAAAATTTTCACTTCACATCCTGGATGGAAAACCACAAATCGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTACATTTAGTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Coding sequence (CDS)

ATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Protein sequence

MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVRPGERDGAAHSVETSSLTAT*

Homology

[Close]

BLAST of CsGy3G017640 vs. NCBI nr
Match: KGN57445.1 (hypothetical protein Csa_009817 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 4.67e-36
Identity = 67/79 (84.81%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVR 60
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRP           
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRP----------- 60

Query: 61 PGERDGAAHSVETSSLTAT 79
           GERDGAAHSVETSSLTAT
Sbjct: 61 -GERDGAAHSVETSSLTAT 67

[Close]

BLAST of CsGy3G017640 vs. ExPASy TrEMBL
Match: A0A0A0L650 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 2.26e-36
Identity = 67/79 (84.81%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVR 60
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRP           
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRP----------- 60

Query: 61 PGERDGAAHSVETSSLTAT 79
           GERDGAAHSVETSSLTAT
Sbjct: 61 -GERDGAAHSVETSSLTAT 67

The following BLAST results are available for this feature:

BLAST of CsGy3G017640 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G017640 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57445.1	4.67e-36	84.81	hypothetical protein Csa_009817 [Cucumis sativus]	[more]

BLAST of CsGy3G017640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L650	2.26e-36	84.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1	[more]

BLAST of CsGy3G017640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017640.2	CsGy3G017640.2	mRNA