CsGy3G015950 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G015950
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr3: 11846139 .. 11847717 (-)
RNA-Seq ExpressionCsGy3G015950
SyntenyCsGy3G015950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTACTAAATTTGGCTATAAATAATATACCAACTATTCAGCTACCTTCATGAGAAAAAGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATAAAATAAAATCTATTTTAGTACACAAGCAAAGAAACATATACTTCCCTTTAAAAGAAATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGGTGATGGTAAAATATGAAAATGGTGGAAAAGAGGGTTGAGTCGAATAAAATGCCTTCAGCATTAAAAATCGAGTCCAAAATGTTTAATAAAAACAAAACATGCGTTTTGGATTACATTACACTATAAACAAATTACATCAGGGACATCCAAACGCCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTTACTGATTGATGTAAACGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGCATCATGTCATCGAGATATTACAAAATGGCAGCAGGAGTAGTTCTCCTGAAGACTAAATAGTCGTTGCAAATGTGGTTGAAAAAACCACCTCGAGAGAGGATGCAAGGTGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGAGAGTTTTGAACTCCCGACACATTTCATTTATGCATCGGAAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGACGTCCCAACACCCAATGCATAAGTGAAACCGTTGAAAATTGAGGAGCTTCAACTCCTGACGGCGTACGTTGGAAATTGTTACATTTTTATTTCTTTTTTTAATTATTATTTTATTTTATTTTTTTAGGTATACCTCGGTGCTATTTCGTTTTCAGTTTCGATCTAAAATTCAATAAAATAGCTTAACAAAATGTTATGAGTTAATTAATATAACTAAACTAAAATAGGAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATAGAACACATGTTTCATAACAATGTGCTTTTAAAATAATAAGTATATATAAAAAAAGACGTCGATCATTTAACAAAAATCTCCCCTACGATTTCAGGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGATATATGAAGCTTTACAATTGTTTGGATGATCATCAGCTATGTTTGTCTTTTGTGGAGCGTCAATCTCTAAGTCTTCTTTACCCTGCAATAAAAAGTACTTTAATAATTTCATATATTTCTTAATCTTATCTATTACTTTATTTCTTCTCAGTACATTATTCAAGCTCTTCTTTTTCCAATGGATC

mRNA sequence

CGTTTACTAAATTTGGCTATAAATAATATACCAACTATTCAGCTACCTTCATGAGAAAAAGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGATATATGAAGCTTTACAATTGTTTGGATGATCATCAGCTATGTTTGTCTTTTGTGGAGCGTCAATCTCTAAGTCTTCTTTACCCTGCAATAAAAAGTACTTTAATAATTTCATATATTTCTTAATCTTATCTATTACTTTATTTCTTCTCAGTACATTATTCAAGCTCTTCTTTTTCCAATGGATC

Coding sequence (CDS)

ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Protein sequence

MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSADFPWGGGYVRRPPILNNP*
Homology
BLAST of CsGy3G015950 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 4.77e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV 60
          MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV
Sbjct: 1  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV 60

Query: 61 VVPKVYKPTSADFPWGGGYVRRPPILNNP 89
          VVPKVYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VVPKVYKPTSADFPWGGGYVRRPPILNNP 89

BLAST of CsGy3G015950 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 9.67e-44
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM V Y+KGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 89
          V +PTS D PWGGGYV RPPILN+P
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of CsGy3G015950 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 8.57e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 1  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE- 60
          M  KMAS P +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + 
Sbjct: 1  MPQKMAS-PWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDG 60

Query: 61 KAVVVPKVYKPTSADFPWGGGYVRRPPILNNP 89
          KA VVP+V KPTS DFPWGGGY+   P L+NP
Sbjct: 61 KAGVVPRVIKPTSEDFPWGGGYIH--PHLSNP 87

BLAST of CsGy3G015950 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 2.56e-10
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 11 KISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTS 70
          +ISL+L+LLFFA LL    +T SA N+  LLH P   KMA+ Y +  K        KPT+
Sbjct: 8  RISLLLRLLFFALLL--VASTASAANSKALLHNPRTPKMAMEYGQVGKGTSK----KPTA 67

Query: 71 ADFPWGGGYVRRPPILNN 88
           D PWGGGYV  PPIL+N
Sbjct: 68 DDVPWGGGYV--PPILSN 77

BLAST of CsGy3G015950 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.1 bits (118), Expect = 1.03e-05
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 12 ISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSA 71
          IS +LKLL    LL IA + ISA +N P      IRKM + Y+   KAVVV K  +  SA
Sbjct: 7  ISFVLKLLVCFALLLIA-SPISAMDNTPR-----IRKMGMEYKLVGKAVVVAKPVRQLSA 66

Query: 72 DFPWGGGY 79
          D PWGGGY
Sbjct: 67 DSPWGGGY 68

BLAST of CsGy3G015950 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 5.66e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 89
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

BLAST of CsGy3G015950 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 4.68e-44
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM V Y+KGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 89
          V +PTS D PWGGGYV RPPILN+P
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of CsGy3G015950 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.29e-20
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 66
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 67 KVYKPTSADFPWGGGYVRRPPILNNP 89
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

BLAST of CsGy3G015950 vs. ExPASy TrEMBL
Match: A0A6J1CHY3 (uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011803 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.13e-05
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 8   SPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPP-IRKMAVGYRKGEKAVVVPKVY 67
           + ++IS +LKL FFA LL  +  + S     P +HK P IRK+ + YR   KAV+  K  
Sbjct: 43  ASLRISFVLKLFFFALLLIASRVSAST----PSIHKRPRIRKLGMEYRSVGKAVLRAKA- 102

Query: 68  KPTSADFPWGGGYVRRPPILNNP 89
              S DFPW GGY   PP  NNP
Sbjct: 103 --ASYDFPWKGGY--NPPN-NNP 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8650427.14.77e-56100.00hypothetical protein Csa_010020 [Cucumis sativus][more]
KAA0067663.19.67e-4485.88hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650426.18.57e-2056.52hypothetical protein Csa_009889 [Cucumis sativus][more]
KAG7014832.12.56e-1051.28hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600177.11.03e-0551.47hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0L8B25.66e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
A0A5D3DJ604.68e-4485.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L6535.29e-2055.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
A0A6J1CHY35.13e-0544.58uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015950.2CsGy3G015950.2mRNA