CsGy3G013485 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G013485
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DEAD-box ATP-dependent RNA helicase 58, chloroplastic
Location	Gy14Chr3: 10079264 .. 10079866 (-)
RNA-Seq Expression	CsGy3G013485
Synteny	CsGy3G013485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGGCAACTCTACATATTCCATCTATTCTTTTGAATTCCTTCTTAATTTATTATTTTGTCTTATGGGGTTTTTTTTTTTTTCCCCCTTCCATTTTCTTTCTTAAATGGTGTAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGGTCAAGTCTATGTATATAAAGTAATCTACTCGGAGAATGGACTCTTTTGGTTGTTTGTTTGTGTGGTATTTTGAAATTCTGTGTACTGTTCGTTACTTACTCTTATCCTTTTAGACAGGTTCTGGGAAGACACTGA

mRNA sequence

ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGGTCAAGTCTATGTATATAAAACAGGTTCTGGGAAGACACTGA

Coding sequence (CDS)

ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGGTCAAGTCTATGTATATAAAACAGGTTCTGGGAAGACACTGA

Protein sequence

MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKSMYIKQVLGRH*

Homology

[Close]

BLAST of CsGy3G013485 vs. ExPASy Swiss-Prot
Match: Q3E9C3 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-17
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 43  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRT 102
           +STS  R L++  SS   +L+ VAE++ E             TLR+IC G VPEHIL R 
Sbjct: 32  HSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRM 91

Query: 103 EEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS 123
           EEIGFV PTD+QR+ALP LF+GRDC+LHAQ  S
Sbjct: 92  EEIGFVFPTDIQREALPTLFTGRDCILHAQTGS 124

[Close]

BLAST of CsGy3G013485 vs. ExPASy Swiss-Prot
Match: Q0JFN7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970600 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 70  ASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS 123
           A+TLRE+C G VPEH+L+R EE+G+V PT+VQ Q+LPVL SG+DC+LHAQ  S
Sbjct: 37  AATLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGS 89

[Close]

BLAST of CsGy3G013485 vs. ExPASy Swiss-Prot
Match: Q84TG1 (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.6e-04
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 67  NFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDC 115
           +F   + R  C G    +ILR   E+GF  PT +QRQA+P+L SGR+C
Sbjct: 138 SFAELSSRYGCEG----YILRNLAELGFKEPTPIQRQAIPILLSGREC 181

[Close]

BLAST of CsGy3G013485 vs. NCBI nr
Match: XP_011650984.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativus] >KGN57008.1 hypothetical protein Csa_011037 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 5.12e-75
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. NCBI nr
Match: XP_031738178.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 5.82e-75
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. NCBI nr
Match: XP_031738177.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 1.12e-74
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. NCBI nr
Match: XP_031738176.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 1.26e-74
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. NCBI nr
Match: XP_008438702.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 231 bits (588), Expect = 2.86e-71
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFE STLREICNG VPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. ExPASy TrEMBL
Match: A0A0A0L5M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149880 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 2.48e-75
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. ExPASy TrEMBL
Match: A0A1S3AX19 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483729 PE=4 SV=1)

HSP 1 Score: 231 bits (588), Expect = 1.39e-71
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
           KNVAESNFE STLREICNG VPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. ExPASy TrEMBL
Match: A0A6J1C9C7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009507 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 2.48e-55
Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAAT LPTTK PPPWLLLSSER  PV+ S QLP F N+NGP+ STSK RP  A  SS SL
Sbjct: 1   MAATLLPTTKSPPPWLLLSSERLHPVYFSVQLPKFNNSNGPLCSTSKFRPPLAFPSSFSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
            NV +SNFEASTLREIC+GHVP+HILRR EEIGFVAPTDVQRQALPVLFSGRDCVLHAQ 
Sbjct: 61  NNVVDSNFEASTLREICDGHVPDHILRRAEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 KS 122
            S
Sbjct: 121 GS 122

[Close]

BLAST of CsGy3G013485 vs. ExPASy TrEMBL
Match: A0A6J1EZV7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441060 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 2.24e-48
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAAT LP+TK PPPWL +SSER +P++L    P  IN NGPI ST K RP +A +SSSSL
Sbjct: 84  MAATLLPSTKIPPPWLPVSSERRYPIYL----PKLINNNGPICSTPKFRPPKAFMSSSSL 143

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
            N  +SNFEAS+LREICNG+VP+HIL R EEIGFVAPT VQRQALPVLFSGRDCVLHAQ 
Sbjct: 144 NNAVDSNFEASSLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQT 201

Query: 121 KS 122
            S
Sbjct: 204 GS 201

[Close]

BLAST of CsGy3G013485 vs. ExPASy TrEMBL
Match: A0A6J1I860 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111472257 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 2.51e-45
Identity = 86/122 (70.49%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAAT LP+TK PPP L +SSER  PV+L    P  IN+NGPI ST K RP +A +SSSS 
Sbjct: 84  MAATLLPSTKIPPPRLPVSSERRHPVYL----PKLINSNGPICSTPKFRPSKAFMSSSSS 143

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQV 120
            N  +SNFEASTLREICNG+VP+HIL R EEIGFVAPT VQRQALPVLFSG+DCVLHAQ 
Sbjct: 144 NNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGQDCVLHAQT 201

Query: 121 KS 122
            S
Sbjct: 204 GS 201

[Close]

BLAST of CsGy3G013485 vs. TAIR 10
Match: AT5G19210.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-18
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 43  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRT 102
           +STS  R L++  SS   +L+ VAE++ E             TLR+IC G VPEHIL R 
Sbjct: 32  HSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRM 91

Query: 103 EEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS 123
           EEIGFV PTD+QR+ALP LF+GRDC+LHAQ  S
Sbjct: 92  EEIGFVFPTDIQREALPTLFTGRDCILHAQTGS 124

[Close]

BLAST of CsGy3G013485 vs. TAIR 10
Match: AT3G09720.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.8e-05
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 67  NFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDC 115
           +F   + R  C G    +ILR   E+GF  PT +QRQA+P+L SGR+C
Sbjct: 138 SFAELSSRYGCEG----YILRNLAELGFKEPTPIQRQAIPILLSGREC 181

The following BLAST results are available for this feature:

BLAST of CsGy3G013485 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E9C3	3.4e-17	53.76	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q0JFN7	1.1e-15	66.04	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. jap...	[more]
Q84TG1	2.6e-04	45.83	DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 P...	[more]

BLAST of CsGy3G013485 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650984.1	5.12e-75	98.36	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativu...	[more]
XP_031738178.1	5.82e-75	98.36	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativu...	[more]
XP_031738177.1	1.12e-74	98.36	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativu...	[more]
XP_031738176.1	1.26e-74	98.36	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis sativu...	[more]
XP_008438702.1	2.86e-71	94.26	PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cuc...	[more]

BLAST of CsGy3G013485 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M9	2.48e-75	98.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149880 PE=4 SV=1	[more]
A0A1S3AX19	1.39e-71	94.26	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Cucumis melo...	[more]
A0A6J1C9C7	2.48e-55	78.69	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Momordica ch...	[more]
A0A6J1EZV7	2.24e-48	71.31	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita moschata OX=3...	[more]
A0A6J1I860	2.51e-45	70.49	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita maxima OX=366...	[more]

BLAST of CsGy3G013485 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19210.2	2.4e-18	53.76	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G09720.1	1.8e-05	45.83	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 44..122 e-value: 1.6E-7 score: 32.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 74..119
None	No IPR available	PANTHER	PTHR47958:SF95	DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC	coord: 42..120
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 42..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G013485.1	CsGy3G013485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity