CsGy3G013310 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G013310
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr3: 9939461 .. 9939860 (-)
RNA-Seq ExpressionCsGy3G013310
SyntenyCsGy3G013310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTAAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCTAAAAAACGTAAGTCACTTCCCTTTTCGAACTCAGTTTCATTTCATCACTTACATTCTCTGTTTCTCTCTTTTTGCCTTCTACAATGCCACCATTTCCCCTTCACTTTCTGTTCTTTCACTAGAAAATTATGTAGAAAAGAAAAGAATCTCTTCAACATCCTTTGAAGTTCAAGTTTTTTTTTTCTTTTTTGGTTCATAGTTTTTGGGTAATTTTGATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCGAAACAATGA

mRNA sequence

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTAAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCTAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCGAAACAATGA

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTAAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCTAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCGAAACAATGA

Protein sequence

MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ*
Homology
[Close]
BLAST of CsGy3G013310 vs. NCBI nr
Match: KGN56989.1 (hypothetical protein Csa_010650 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 2.00e-40
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

[Close]
BLAST of CsGy3G013310 vs. NCBI nr
Match: KAG6597448.1 (hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (310), Expect = 1.76e-35
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

[Close]
BLAST of CsGy3G013310 vs. NCBI nr
Match: PHT38775.1 (hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical protein T459_08075 [Capsicum annuum])

HSP 1 Score: 122 bits (306), Expect = 6.46e-35
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

[Close]
BLAST of CsGy3G013310 vs. NCBI nr
Match: KAG5587814.1 (hypothetical protein H5410_048248 [Solanum commersonii] >TMW85068.1 hypothetical protein EJD97_023849 [Solanum chilense])

HSP 1 Score: 119 bits (298), Expect = 1.07e-33
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

[Close]
BLAST of CsGy3G013310 vs. NCBI nr
Match: POO02187.1 (hypothetical protein TorRG33x02_019710 [Trema orientale])

HSP 1 Score: 118 bits (296), Expect = 2.06e-33
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVESHT LP K
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT-LPTK 59

[Close]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match: A0A0A0L7K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 9.70e-41
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

[Close]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match: A0A2G2W0L8 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_22348 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 3.13e-35
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

[Close]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match: A0A2G2ZVG2 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 3.13e-35
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

[Close]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match: A0A0V0GKY9 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 5.20e-34
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

[Close]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match: M1CYA3 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 5.20e-34
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

The following BLAST results are available for this feature:
BLAST of CsGy3G013310 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy3G013310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56989.12.00e-40100.00hypothetical protein Csa_010650 [Cucumis sativus][more]
KAG6597448.11.76e-3598.21hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sorori... [more]
PHT38775.16.46e-3590.32hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical pr... [more]
KAG5587814.11.07e-3388.71hypothetical protein H5410_048248 [Solanum commersonii] >TMW85068.1 hypothetical... [more]
POO02187.12.06e-3393.33hypothetical protein TorRG33x02_019710 [Trema orientale][more]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7K59.70e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1[more]
A0A2G2W0L83.13e-3590.32Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_22348 PE=4 SV=1[more]
A0A2G2ZVG23.13e-3590.32Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1[more]
A0A0V0GKY95.20e-3488.71Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
M1CYA35.20e-3488.71Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
BLAST of CsGy3G013310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33181:SF7OS07G0572400 PROTEINcoord: 1..59
NoneNo IPR availablePANTHERPTHR33181OS01G0778500 PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G013310.2CsGy3G013310.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001172 transcription, RNA-templated
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity