CsGy3G006160 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAACATCTATCGAAAGTGCTATGCGAGATGAATCCTAAGACTTATGTTCCTCAACTAATTTCCATTGGCCCTTTTCACCATGGCACTCCAAAAGATTTGATAGCCAATGAAAAATATAAGCTTCATGGTTTTATTAACTTTCTACGTCGTATCAATATTAAATCAACAGTGGAGGGTGGCATTTCTGAAACTGCCAGATCATTGAAGGACCTGCTGAAAACTGGAACATTGAAAGTTCTCGTGGAAAAAGCTCATGATTGGGTGAAAGAAGCTTTGAATTGCTATGCAACACCCATAAACATGGAAGAAAAGGATTTTATTATAATGATGGTTGTGGATGCTTGTTTCATAGTGGAGTTTTTTATACTAAAAGTTGATGAAAGCCATCCAATTTGTAAGTTCGATCTAATTCAAGAGAATGTAGATATTTCATTCCACGGAGGCATAGAGGTAGATATAACTGATGACATGATCAAGTTGGAAAATCAAGTTCCTTTTTTTCTTCTTGAACGCCTATTTGAGGAAATACCCAAAGAAAATGTCCCCATCCGCTCCAAATTTAGAGAAGAAAAAGAATTCCCCATCTCTTCTAGAGATGATAAAAATGTCCCCGTCCGCTCCAAATTTAGAGAAGAAAAAGAACTCCCCATCTCTAGAGATGATGAAAATGTCCCTATCTCCCTTAAAGATCTTGCACATTGGGCTCTAAAGTCTAGGTTGGTGAGGGACTGTGAGATCGATCTGAATAAAAACCAGACCACTTGGTTGATTTCTTAA ATGCAACATCTATCGAAAGTGCTATGCGAGATGAATCCTAAGACTTATGTTCCTCAACTAATTTCCATTGGCCCTTTTCACCATGGCACTCCAAAAGATTTGATAGCCAATGAAAAATATAAGCTTCATGGTTTTATTAACTTTCTACGTCGTATCAATATTAAATCAACAGTGGAGGGTGGCATTTCTGAAACTGCCAGATCATTGAAGGACCTGCTGAAAACTGGAACATTGAAAGTTCTCGTGGAAAAAGCTCATGATTGGGTGAAAGAAGCTTTGAATTGCTATGCAACACCCATAAACATGGAAGAAAAGGATTTTATTATAATGATGGTTGTGGATGCTTGTTTCATAGTGGAGTTTTTTATACTAAAAGTTGATGAAAGCCATCCAATTTGTAAGTTCGATCTAATTCAAGAGAATGTAGATATTTCATTCCACGGAGGCATAGAGGTAGATATAACTGATGACATGATCAAGTTGGAAAATCAAGTTCCTTTTTTTCTTCTTGAACGCCTATTTGAGGAAATACCCAAAGAAAATGTCCCCATCCGCTCCAAATTTAGAGAAGAAAAAGAATTCCCCATCTCTTCTAGAGATGATAAAAATGTCCCCGTCCGCTCCAAATTTAGAGAAGAAAAAGAACTCCCCATCTCTAGAGATGATGAAAATGTCCCTATCTCCCTTAAAGATCTTGCACATTGGGCTCTAAAGTCTAGGTTGGTGAGGGACTGTGAGATCGATCTGAATAAAAACCAGACCACTTGGTTGATTTCTTAA ATGCAACATCTATCGAAAGTGCTATGCGAGATGAATCCTAAGACTTATGTTCCTCAACTAATTTCCATTGGCCCTTTTCACCATGGCACTCCAAAAGATTTGATAGCCAATGAAAAATATAAGCTTCATGGTTTTATTAACTTTCTACGTCGTATCAATATTAAATCAACAGTGGAGGGTGGCATTTCTGAAACTGCCAGATCATTGAAGGACCTGCTGAAAACTGGAACATTGAAAGTTCTCGTGGAAAAAGCTCATGATTGGGTGAAAGAAGCTTTGAATTGCTATGCAACACCCATAAACATGGAAGAAAAGGATTTTATTATAATGATGGTTGTGGATGCTTGTTTCATAGTGGAGTTTTTTATACTAAAAGTTGATGAAAGCCATCCAATTTGTAAGTTCGATCTAATTCAAGAGAATGTAGATATTTCATTCCACGGAGGCATAGAGGTAGATATAACTGATGACATGATCAAGTTGGAAAATCAAGTTCCTTTTTTTCTTCTTGAACGCCTATTTGAGGAAATACCCAAAGAAAATGTCCCCATCCGCTCCAAATTTAGAGAAGAAAAAGAATTCCCCATCTCTTCTAGAGATGATAAAAATGTCCCCGTCCGCTCCAAATTTAGAGAAGAAAAAGAACTCCCCATCTCTAGAGATGATGAAAATGTCCCTATCTCCCTTAAAGATCTTGCACATTGGGCTCTAAAGTCTAGGTTGGTGAGGGACTGTGAGATCGATCTGAATAAAAACCAGACCACTTGGTTGATTTCTTAA MQHLSKVLCEMNPKTYVPQLISIGPFHHGTPKDLIANEKYKLHGFINFLRRINIKSTVEGGISETARSLKDLLKTGTLKVLVEKAHDWVKEALNCYATPINMEEKDFIIMMVVDACFIVEFFILKVDESHPICKFDLIQENVDISFHGGIEVDITDDMIKLENQVPFFLLERLFEEIPKENVPIRSKFREEKEFPISSRDDKNVPVRSKFREEKELPISRDDENVPISLKDLAHWALKSRLVRDCEIDLNKNQTTWLIS* Homology
BLAST of CsGy3G006160 vs. ExPASy Swiss-Prot
Match: Q9SD53 (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06 Identity = 45/169 (26.63%), Postives = 76/169 (44.97%), Query Frame = 0
BLAST of CsGy3G006160 vs. NCBI nr
Match: XP_031739483.1 (UPF0481 protein At3g47200-like [Cucumis sativus] >XP_031739484.1 UPF0481 protein At3g47200-like [Cucumis sativus] >XP_031739485.1 UPF0481 protein At3g47200-like [Cucumis sativus] >KGN56228.1 hypothetical protein Csa_011586 [Cucumis sativus]) HSP 1 Score: 521 bits (1341), Expect = 2.39e-186 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
BLAST of CsGy3G006160 vs. NCBI nr
Match: XP_038889346.1 (UPF0481 protein At3g47200-like [Benincasa hispida]) HSP 1 Score: 248 bits (634), Expect = 2.49e-76 Identity = 138/235 (58.72%), Postives = 163/235 (69.36%), Query Frame = 0
BLAST of CsGy3G006160 vs. NCBI nr
Match: XP_038890800.1 (UPF0481 protein At3g47200-like [Benincasa hispida]) HSP 1 Score: 230 bits (586), Expect = 7.57e-69 Identity = 132/249 (53.01%), Postives = 153/249 (61.45%), Query Frame = 0
BLAST of CsGy3G006160 vs. NCBI nr
Match: XP_038886585.1 (UPF0481 protein At3g47200-like [Benincasa hispida]) HSP 1 Score: 223 bits (567), Expect = 1.54e-65 Identity = 118/192 (61.46%), Postives = 142/192 (73.96%), Query Frame = 0
BLAST of CsGy3G006160 vs. NCBI nr
Match: KAA0064943.1 (UPF0481 protein [Cucumis melo var. makuwa]) HSP 1 Score: 213 bits (541), Expect = 2.70e-62 Identity = 113/190 (59.47%), Postives = 142/190 (74.74%), Query Frame = 0
BLAST of CsGy3G006160 vs. ExPASy TrEMBL
Match: A0A0A0L379 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104330 PE=4 SV=1) HSP 1 Score: 521 bits (1341), Expect = 1.16e-186 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
BLAST of CsGy3G006160 vs. ExPASy TrEMBL
Match: A0A5A7V9V0 (UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002610 PE=4 SV=1) HSP 1 Score: 213 bits (541), Expect = 1.31e-62 Identity = 113/190 (59.47%), Postives = 142/190 (74.74%), Query Frame = 0
BLAST of CsGy3G006160 vs. ExPASy TrEMBL
Match: A0A1S3BCY5 (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488292 PE=4 SV=1) HSP 1 Score: 211 bits (536), Expect = 7.25e-62 Identity = 112/190 (58.95%), Postives = 142/190 (74.74%), Query Frame = 0
BLAST of CsGy3G006160 vs. ExPASy TrEMBL
Match: A0A5A7VGS6 (UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002590 PE=4 SV=1) HSP 1 Score: 181 bits (458), Expect = 6.19e-50 Identity = 119/247 (48.18%), Postives = 143/247 (57.89%), Query Frame = 0
BLAST of CsGy3G006160 vs. ExPASy TrEMBL
Match: A0A0A0LQ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380610 PE=4 SV=1) HSP 1 Score: 179 bits (454), Expect = 1.29e-49 Identity = 104/193 (53.89%), Postives = 130/193 (67.36%), Query Frame = 0
BLAST of CsGy3G006160 vs. TAIR 10
Match: AT4G31980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). ) HSP 1 Score: 77.8 bits (190), Expect = 1.4e-14 Identity = 52/167 (31.14%), Postives = 81/167 (48.50%), Query Frame = 0
BLAST of CsGy3G006160 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14 Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 0
BLAST of CsGy3G006160 vs. TAIR 10
Match: AT3G50170.2 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14 Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 0
BLAST of CsGy3G006160 vs. TAIR 10
Match: AT3G47210.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 72.8 bits (177), Expect = 4.6e-13 Identity = 52/171 (30.41%), Postives = 78/171 (45.61%), Query Frame = 0
BLAST of CsGy3G006160 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 72.4 bits (176), Expect = 6.0e-13 Identity = 48/168 (28.57%), Postives = 83/168 (49.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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