CsGy3G005930 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G005930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cytochrome c-type biogenesis protein
Location	Gy14Chr3: 4956440 .. 4958451 (-)
RNA-Seq Expression	CsGy3G005930
Synteny	CsGy3G005930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTATTATCCTATTGTTTTTTCTTGGTAGGGTTGATTGAGGTGAGCCGTCTCTCCCTGTATTGTCCTAACGAGAATTCATCCCTTCCATCCTATCATAGTAATTTCTAACTGCAATCTGATCTGCTAAACTTTTCTCTCTGACTTGCTCGATTTTTATCAGAGCTGTATCTTTAACTTGCAGTTTGCATTCAATGATTTCTGGGTATTTTCTTGCGTTGCAGTTGGGTCAGAGCTTAAGGTTTCACAGTGTCTGAAATGGAGACCGATGAGGATGCTCTGAAAAAAACCCAGCTAGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGTATTGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGGTATCGGTTATTTAGGTTAACTTCAATCTAAATAATTTAACTAACACTTCTTCTCTCTTGTGCAAATTGCCTTTTTGTTTTCTCTTTTCAATGATGAAATTCAGAAATATGGATACTAGATTTCTGATGAAAATGGCTTGGAAGAAGTGTAGTTACTAAACCTTCTTGTAATTGTGATTATAATACTAATTTACTCTTACAAGTAAAGGAGGAGAGGATGCAGTTACTGAAGGTCAATAAACCAAGTAATCCAAATAACTAGAAAATCATCTCAATCCAAAAAAAAAAAAAAAAAAAAAAAATTCTAACTTGTCAATGGGGGCATACTTTGAACCAGAAATCCTGCAATCTCTCTGGCAAGTATCAATGGAGGTCGAAACTTTCACAAGAGATGGTTCATGTCAATGGGAAATATAGTATTTAGTGGTTCTCTATTTCATAAACTACTTGAAGGAAATAGAAATAAATCAATTTTTTTTAATGAAAAATTCTTCTTTTGGATTAGTAGATTATCTACAAAATAACCATCTATGTTGCCATCCCCTTGGAAATTTTAAAATAATGCATAGTTTTAAATAACTTCATTTGATCACGGTGCCTCTTATGTCATAATGATGAATGAAAAAGAAGGTTATACCAGACCTTGAATCTTTGCCACACAACGATTTCTCACATATTTGTTGAGTTACCTGCCAATAATTCTTGGATGAATATTGCTTTGCAATAAATTTGCTTCACATTGGGTTGTATTTGTTATGTAACCATAGTTGATTCGTGATGAGATTCGGTCTGGGAAATCGGACAAAGATATCTACAAAAAGCTTGAGAATGATTATGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGGCTTATGGCTATCACCGGTCAGTTAATGTGTGTGAAATTCAGAATTAAGCAAATAGTTCATCCTATTTCTTCTAATTTTAATTCTAAATATATTACACTTTGGAATAGGTGATAGTGGCTGGTGCTGCTGTAGGAGTATGGGCTTATAGTAAGCACAAGCAAAGGTCTAATGTTCACATCATGGCTTTAAATCTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCGCCTTCTCAGAGAACCCCTTCTTCATGGTGGAGGAATTGGCGTAGGCAATGAGGCAACTGCTCCTTATTGCTAGCTCGAACAACAGTTCAAAGAGTTTCAGAGTATGTTGAAGATCTACACATTAGATTACAAATCTGAAAGCATTACAATTTTTGTACTGTATTATACTCAACGATGGTTTTATGATTACTTTTGCTAGAAAAAATGTTACCTACATTGTGAATATGAACTTGCACCTTACAATTCTGTTTATATTTGTTTCTTATCGCCAGTTTAGATGTTACCTAGTTAGGTTCATAGGGTTCTCTGAAGGAAACACACCAATGAACAGAAGTTTGGATTACCACACAATTCCAGGTTGTTATCACACTATTCCTGGACCCTATTTTCATTTAAAATTCTAAAGGATTATGCTCCAAGATAGTTTTGAGCTGTTTATGGAAGGTGGGTGGTAATGTTACAACTTTTGAG

mRNA sequence

CCTTATTATCCTATTGTTTTTTCTTGGTAGGGTTGATTGAGGTGAGCCGTCTCTCCCTGTATTGTCCTAACGAGAATTCATCCCTTCCATCCTATCATAGTAATTTCTAACTGCAATCTGATCTGCTAAACTTTTCTCTCTGACTTGCTCGATTTTTATCAGAGCTGTATCTTTAACTTGCAGTTTGCATTCAATGATTTCTGGGTATTTTCTTGCGTTGCAGTTGGGTCAGAGCTTAAGGTTTCACAGTGTCTGAAATGGAGACCGATGAGGATGCTCTGAAAAAAACCCAGCTAGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGTATTGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATTCGTGATGAGATTCGGTCTGGGAAATCGGACAAAGATATCTACAAAAAGCTTGAGAATGATTATGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGGCTTATGGCTATCACCGGTGATAGTGGCTGGTGCTGCTGTAGGAGTATGGGCTTATAGTAAGCACAAGCAAAGGTCTAATGTTCACATCATGGCTTTAAATCTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCGCCTTCTCAGAGAACCCCTTCTTCATGGTGGAGGAATTGGCGTAGGCAATGAGGCAACTGCTCCTTATTGCTAGCTCGAACAACAGTTCAAAGAGTTTCAGAGTATGTTGAAGATCTACACATTAGATTACAAATCTGAAAGCATTACAATTTTTGTACTGTATTATACTCAACGATGGTTTTATGATTACTTTTGCTAGAAAAAATGTTACCTACATTGTGAATATGAACTTGCACCTTACAATTCTGTTTATATTTGTTTCTTATCGCCAGTTTAGATGTTACCTAGTTAGGTTCATAGGGTTCTCTGAAGGAAACACACCAATGAACAGAAGTTTGGATTACCACACAATTCCAGGTTGTTATCACACTATTCCTGGACCCTATTTTCATTTAAAATTCTAAAGGATTATGCTCCAAGATAGTTTTGAGCTGTTTATGGAAGGTGGGTGGTAATGTTACAACTTTTGAG

Coding sequence (CDS)

ATGGAGACCGATGAGGATGCTCTGAAAAAAACCCAGCTAGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGTATTGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATTCGTGATGAGATTCGGTCTGGGAAATCGGACAAAGATATCTACAAAAAGCTTGAGAATGATTATGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGGCTTATGGCTATCACCGGTGATAGTGGCTGGTGCTGCTGTAGGAGTATGGGCTTATAGTAAGCACAAGCAAAGGTCTAATGTTCACATCATGGCTTTAAATCTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCGCCTTCTCAGAGAACCCCTTCTTCATGGTGGAGGAATTGGCGTAGGCAATGA

Protein sequence

METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ*

Homology

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BLAST of CsGy3G005930 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-64
Identity = 119/152 (78.29%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M T+ED +K+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSD
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IYKKL+ DYGETILYTPKFDLQTA +WLSPVIV G A GVWAY KH+QR+NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWW 153
           LVRGVPLTP+EK+TMLD+L+PPP     + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPP---PANKWW 148

[Close]

BLAST of CsGy3G005930 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-64
Identity = 119/152 (78.29%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M T+ED +K+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSD
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IYKKL+ DYGETILYTPKFDLQTA +WLSPVIV G A GVWAY KH+QR+NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWW 153
           LVRGVPLTP+EK+TMLD+L+PPP     + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPP---PANKWW 148

[Close]

BLAST of CsGy3G005930 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-52
Identity = 102/156 (65.38%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IY KLE+++GET+LY PKFDLQTA LWL+PVI+AG       Y KH+ R NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PSQRTPSSWWRNW 156
           L+RGVPLTPKE+ T+LD+L PP P  +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of CsGy3G005930 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   DALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYK 65
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G S+  +  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLENDYGETILYTPKFDLQTAGLW-LSPVIVAGAAVGVWAYSKHKQRSNVHIMALNLVRG 125
            L   YGE +L  P+F+ QT  LW L P+++ G  + +W   + + RS   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 126 VPLTPKEKQTMLDLLS 141
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

[Close]

BLAST of CsGy3G005930 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 44/128 (34.38%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 14  VEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYKKLENDYGE 73
           +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G SD+ +   + + YGE
Sbjct: 32  LEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVISYVVSRYGE 91

Query: 74  TILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQ 133
            +L  P+ + +T  LW  P I+  A +     +  ++ +         V G PL+ +EK+
Sbjct: 92  FVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR--------VPGAPLSDEEKE 151

Query: 134 TMLDLLSP 142
            +  LL P
Sbjct: 152 RLDRLLRP 151

[Close]

BLAST of CsGy3G005930 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 320 bits (819), Expect = 4.10e-110
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 312 bits (799), Expect = 4.60e-107
Identity = 153/158 (96.84%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IYKKLENDYGETILYTPKFDLQTAGLWLSPV+VAGAAVGVWAYSKHKQRSNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 296 bits (757), Expect = 1.05e-100
Identity = 145/153 (94.77%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           METDEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IYKKLENDYGET+LYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQRSNVHIMALN
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWR 153
           LVRGVPLTPKEKQTMLDLLSPPPSQRT SSWWR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWR 153

[Close]

BLAST of CsGy3G005930 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 293 bits (749), Expect = 1.94e-99
Identity = 140/158 (88.61%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+++DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IY+KLE+DYGET+LYTPKFDLQTA LWLSPV+VAGAA GVWAY+KHKQ++NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLL+PPP QRT SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288 bits (736), Expect = 1.86e-97
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+I+KKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of CsGy3G005930 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 320 bits (819), Expect = 1.98e-110
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 2.23e-107
Identity = 153/158 (96.84%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IYKKLENDYGETILYTPKFDLQTAGLWLSPV+VAGAAVGVWAYSKHKQRSNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 2.23e-107
Identity = 153/158 (96.84%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IYKKLENDYGETILYTPKFDLQTAGLWLSPV+VAGAAVGVWAYSKHKQRSNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 9.39e-100
Identity = 140/158 (88.61%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+++DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IY+KLE+DYGET+LYTPKFDLQTA LWLSPV+VAGAA GVWAY+KHKQ++NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           LVRGVPLTPKEKQTMLDLL+PPP QRT SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of CsGy3G005930 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 9.01e-98
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+I+KKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of CsGy3G005930 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-53
Identity = 102/156 (65.38%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IY KLE+++GET+LY PKFDLQTA LWL+PVI+AG       Y KH+ R NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PSQRTPSSWWRNW 156
           L+RGVPLTPKE+ T+LD+L PP P  +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of CsGy3G005930 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-53
Identity = 102/156 (65.38%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120
           K+IY KLE+++GET+LY PKFDLQTA LWL+PVI+AG       Y KH+ R NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PSQRTPSSWWRNW 156
           L+RGVPLTPKE+ T+LD+L PP P  +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of CsGy3G005930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	3.4e-64	78.29	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	3.4e-64	78.29	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	5.1e-52	65.38	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	2.0e-16	35.29	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	3.3e-14	34.38	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of CsGy3G005930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149299.1	4.10e-110	100.00	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_008452301.1	4.60e-107	96.84	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_038904619.1	1.05e-100	94.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_022152937.1	1.94e-99	88.61	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_022953979.1	1.86e-97	88.61	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]

BLAST of CsGy3G005930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L351	1.98e-110	100.00	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A1S4DZT6	2.23e-107	96.84	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	2.23e-107	96.84	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DHL6	9.39e-100	88.61	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1JTI4	9.01e-98	88.61	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]

BLAST of CsGy3G005930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	3.6e-53	65.38	cytochrome c biogenesis protein family	[more]
AT1G15220.2	3.6e-53	65.38	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 9..137 e-value: 2.4E-29 score: 101.4
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 2..82 e-value: 2.9E-20 score: 74.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..158
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	CDD	cd16378	CcmH_N	coord: 14..79 e-value: 5.1793E-26 score: 91.8214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G005930.2	CsGy3G005930.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity