CsGy3G003827 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACCATTGACGACCTCTCTCCCTTCACAAAAACAGTTTTAACCAATGGCCACAAATAATAGATTAAAAATAGAAACGATAATTGTTTAGAAACCCTTGAAAACCCACAAAATTACCAAATCTCCCCAATTTTTCTCTTATAAAATCCATTCCAAATCCTTAAACCCAAACTCTTCTGTTCCAATCCCCAAAGGGGAATCAGAACTGAACAGAACACCCACCACAGAAAATCCGCCATTGAAGCTTCTCCTCATTCCTCTCCGGAAGTCGCAAATCCAACCATCATTCCCCGGCTTTTGATCACCCATGTGATCGCCTCACCGGCATCTAATAAAAAAAAGGAATAACAAATTACAAAACAAAACAAAAAAAGTCCTCATCAATCTTCCTACACGTATACATGGATCCAATCAGGACACAACCGAAACAGACGAAGACGAATTGCAAGACACCCACCTCGAAATCGGCAATGGTGGAGACGGAATTCGACGATCTGAAGAAGAATGCGAATCTGCTAATGTCACCGACGGCGTTGTCGAGGATGACGAAGTCGCGGAGCATTAAATCGAATTGTCTCTGCTCTCCGACCACTCACATTGGATCTTTCCGATGCCGACGCCACCGGAGCACATCCATATCCCGCGGCGGGTCAGTTGGGTCAAACCTGTCGGATCTGGTTCAGAAATCGGAGGCGATGGAGGATTAATTTGTGAAGGTGAGTAGAGATTTGAGTTTGTTGTTGAGGTTTGTGGAGAAGCTTCATTTGGTTTATATTTTTTTTCTTTCATCACAATAAATATTAAGTTGGTTTATGGTTGCAAAAACACTTTAATTAATTGCCTCTTTATTATTATTACTATGGATTTCTCTACATATTTCATGTATCTAATTATAATTAAAGTGTAAAATTCTACCT AAACCATTGACGACCTCTCTCCCTTCACAAAAACAGTTTTAACCAATGGCCACAAATAATAGATTAAAAATAGAAACGATAATTGTTTAGAAACCCTTGAAAACCCACAAAATTACCAAATCTCCCCAATTTTTCTCTTATAAAATCCATTCCAAATCCTTAAACCCAAACTCTTCTGTTCCAATCCCCAAAGGGGAATCAGAACTGAACAGAACACCCACCACAGAAAATCCGCCATTGAAGCTTCTCCTCATTCCTCTCCGGAAGTCGCAAATCCAACCATCATTCCCCGGCTTTTGATCACCCATGTGATCGCCTCACCGGCATCTAATAAAAAAAAGGAATAACAAATTACAAAACAAAACAAAAAAAGTCCTCATCAATCTTCCTACACGTATACATGGATCCAATCAGGACACAACCGAAACAGACGAAGACGAATTGCAAGACACCCACCTCGAAATCGGCAATGGTGGAGACGGAATTCGACGATCTGAAGAAGAATGCGAATCTGCTAATGTCACCGACGGCGTTGTCGAGGATGACGAAGTCGCGGAGCATTAAATCGAATTGTCTCTGCTCTCCGACCACTCACATTGGATCTTTCCGATGCCGACGCCACCGGAGCACATCCATATCCCGCGGCGGGTCAGTTGGGTCAAACCTGTCGGATCTGGTTCAGAAATCGGAGGCGATGGAGGATTAATTTGTGAAGGTGAGTAGAGATTTGAGTTTGTTGTTGAGGTTTGTGGAGAAGCTTCATTTGGTTTATATTTTTTTTCTTTCATCACAATAAATATTAAGTTGGTTTATGGTTGCAAAAACACTTTAATTAATTGCCTCTTTATTATTATTACTATGGATTTCTCTACATATTTCATGTATCTAATTATAATTAAAGTGTAAAATTCTACCT ATGGATCCAATCAGGACACAACCGAAACAGACGAAGACGAATTGCAAGACACCCACCTCGAAATCGGCAATGGTGGAGACGGAATTCGACGATCTGAAGAAGAATGCGAATCTGCTAATGTCACCGACGGCGTTGTCGAGGATGACGAAGTCGCGGAGCATTAAATCGAATTGTCTCTGCTCTCCGACCACTCACATTGGATCTTTCCGATGCCGACGCCACCGGAGCACATCCATATCCCGCGGCGGGTCAGTTGGGTCAAACCTGTCGGATCTGGTTCAGAAATCGGAGGCGATGGAGGATTAA MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLCSPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED* Homology
BLAST of CsGy3G003827 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_011649 [Cucumis sativus]) HSP 1 Score: 199 bits (506), Expect = 3.25e-64 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of CsGy3G003827 vs. NCBI nr
Match: TYK19387.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa]) HSP 1 Score: 181 bits (458), Expect = 6.85e-57 Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of CsGy3G003827 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia]) HSP 1 Score: 153 bits (386), Expect = 7.62e-46 Identity = 78/102 (76.47%), Postives = 89/102 (87.25%), Query Frame = 0
BLAST of CsGy3G003827 vs. NCBI nr
Match: KAG7015599.1 (hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 123 bits (309), Expect = 3.04e-34 Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0
BLAST of CsGy3G003827 vs. NCBI nr
Match: KAG6577543.1 (hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 122 bits (307), Expect = 1.63e-33 Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0
BLAST of CsGy3G003827 vs. ExPASy TrEMBL
Match: A0A0A0L7C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1) HSP 1 Score: 199 bits (506), Expect = 1.58e-64 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of CsGy3G003827 vs. ExPASy TrEMBL
Match: A0A5D3D753 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00180 PE=4 SV=1) HSP 1 Score: 181 bits (458), Expect = 3.31e-57 Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of CsGy3G003827 vs. ExPASy TrEMBL
Match: A0A6J1CNY2 (uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013367 PE=4 SV=1) HSP 1 Score: 153 bits (386), Expect = 3.69e-46 Identity = 78/102 (76.47%), Postives = 89/102 (87.25%), Query Frame = 0
BLAST of CsGy3G003827 vs. ExPASy TrEMBL
Match: A0A5N6L3X1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 7.80e-22 Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 0
BLAST of CsGy3G003827 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.66e-21 Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 0
BLAST of CsGy3G003827 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10 Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of CsGy3G003827 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 58.2 bits (139), Expect = 4.6e-09 Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of CsGy3G003827 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06 Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of CsGy3G003827 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06 Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of CsGy3G003827 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 2.4e-05 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|