CsGy3G002575 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G002575
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 2000287 .. 2000590 (-)
RNA-Seq Expression	CsGy3G002575
Synteny	CsGy3G002575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATTCCCAATTTCATCCCCAATAGCTATTAACCATTCCGAAAACAGAACTTCATCACTTACCTCGAGTCCAAGAAGCTCCGTTCCCCGACCCGAACTCTCCAGAATCAATACGCCTAACCTAATTTCAACTATCACTTCCCTCTCCGAACAACAACGGCAAAGTTCAATGATCCTCAATTTCTTATCATAGTTCTACCGAGTTCAGACCTTCTCGCCGCACCAACGCCCGAAGCACATGGTTGCGCCGCCGTAGCTCCGCCGCTCGTCGAATTAGGTCATGGAACTCTAGCTCGTGA

mRNA sequence

ATGGCATCATTCCCAATTTCATCCCCAATAGCTATTAACCATTCCGAAAACAGAACTTCATCACTTACCTCGAGTCCAAGAAGCTCCGTTCCCCGACCCGAACTCTCCAGAATCAATACGCCTAACCTAATTTCAACTATCACTTCCCTCTCCGAACAACAACGTTCTACCGAGTTCAGACCTTCTCGCCGCACCAACGCCCGAAGCACATGGTTGCGCCGCCGTAGCTCCGCCGCTCGTCGAATTAGGTCATGGAACTCTAGCTCGTGA

Coding sequence (CDS)

ATGGCATCATTCCCAATTTCATCCCCAATAGCTATTAACCATTCCGAAAACAGAACTTCATCACTTACCTCGAGTCCAAGAAGCTCCGTTCCCCGACCCGAACTCTCCAGAATCAATACGCCTAACCTAATTTCAACTATCACTTCCCTCTCCGAACAACAACGTTCTACCGAGTTCAGACCTTCTCGCCGCACCAACGCCCGAAGCACATGGTTGCGCCGCCGTAGCTCCGCCGCTCGTCGAATTAGGTCATGGAACTCTAGCTCGTGA

Protein sequence

MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFRPSRRTNARSTWLRRRSSAARRIRSWNSSS*

Homology

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BLAST of CsGy3G002575 vs. NCBI nr
Match: KAE8650057.1 (hypothetical protein Csa_023702 [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 4.99e-49
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFR 60
          MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFR
Sbjct: 1  MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFR 60

Query: 61 PSRRTNARSTWLRRRSSAARRIRSWNSSS 89
          PSRRTNARSTWLRRRSSAARRIRSWNSSS
Sbjct: 61 PSRRTNARSTWLRRRSSAARRIRSWNSSS 89

The following BLAST results are available for this feature:

BLAST of CsGy3G002575 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G002575 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650057.1	4.99e-49	100.00	hypothetical protein Csa_023702 [Cucumis sativus]	[more]

BLAST of CsGy3G002575 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy3G002575 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G002575.1	CsGy3G002575.1	mRNA