CsGy3G002130 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G002130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	E3 ubiquitin-protein ligase RNF34
Location	Gy14Chr3: 1652621 .. 1655281 (+)
RNA-Seq Expression	CsGy3G002130
Synteny	CsGy3G002130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGATTTAAAGTTAAAAATCACCGTAGTCCTTCATTTGTTTTTGGGCAGTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGGTTCATCCCACTTTCTCCGCTCCTCAGTCTCTCAATTTACCTCTTATTCTTCTAAATTTGATGGTTGAAGGACTTCTTTTTCTTCACAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGGTCGAATTTTCTTCGTTTTTAACCTATATTGAATGTTAGGATTAGTACTTGTTTATTAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTTGTATCAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGGTACCTACTTCCCTTTTGATTTTGATTTTTTTTTTCTAAAAAAATCTGCTTTTATTTTCTTTGCTGCTTATTATAGTTTGAAATCTGGACACGTGCTTAGAATTTTCACTGCATTCACATTTAGAAGTCTAATTGCAAACACGAGCACACCCGTTGAGTCATAATTTTGTGTTTAATGTTGCCTAGATTTTAAAGTTTAGGATTATGTTAGCTTAGTCAAGTAGTACAAATTATTTGACCAATGATTCTCTTCCCCAATTAGGTAATACTTTGTTGTATCCTCAGCTGTTGTGTATCTCATTCAATTTGTTCAATCATTGTTTACCTTGTGGTAAACGCTTCATACATAAGATCTGTGTTTGTTGCAAAATCTATGCATGGGCATGGATGCCTGATGGCTGGCTAGGAAATACTCACTGGCTGTTGTCCTTTTCTTGGTTTTCTCATTGTCTGGAAGTATATGGGTTTTTTTAGTTTCAGTTTTTATAGCTTTTGCAAGTTGTGTTCTGTTTTCGCTTATGCAAGTGATGATGGGAATTTCCAGTTGTTGGTTTAAAACTTTGAGTATTATGCAGTTTGAAGTGATATTTAGTGGTTGGAATAATACTGACTATATAACATGTAGTGTTGTTAAGTTACCAACTATTGCTAACTTCATAGCACTATTATGAGATGTAATGTAGAGGTTGTTTGTAGCAACTGTTTCCGACTATATAACATCTTGCACTTCAGCTGGAAACTTATCTCCCATGTTTATGTCGGTACTGCCTTTGGAACATAGAACATTCAGCATCAAATTTGAATATATTATAGTGCTTGCGGTGCTTGTTTCCTCTAAGGAGTTGCTTGCTCACTTCCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGTTTGTATATTGACCAACTACTACTTAAAAAAACATTCATTGTTCCTGATAGATACATTCTTGTTAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGTAAGTCACTTTTCCTTGTAAGTTGTGTCGTAGACGTGGTAGCTTGGTTTCTCATTATTTTTAATGTCATAATTCGATCTAAATAGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCCCTTTTATATATATGTACGATGTAGCTTCAAATAAGTTAAATAGTTTAATTCTTAGTAAGAGAAGAAGGTTTTTTGGATGGTAAGAAGTGTTTATGTAGCTCATGTTTGGGATTCATTTTAAAATGGTGTAATCACTTTTCTGTATTCAACATCGTTCCCTTAGAATTACTCAAACTCAATTTAACATTTGGTTTTCTACTTTTAGATGGATAAA

mRNA sequence

TATTGATTTAAAGTTAAAAATCACCGTAGTCCTTCATTTGTTTTTGGGCAGTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCCCTTTTATATATATGTACGATGTAGCTTCAAATAAGTTAAATAGTTTAATTCTTAGTAAGAGAAGAAGGTTTTTTGGATGGTAAGAAGTGTTTATGTAGCTCATGTTTGGGATTCATTTTAAAATGGTGTAATCACTTTTCTGTATTCAACATCGTTCCCTTAGAATTACTCAAACTCAATTTAACATTTGGTTTTCTACTTTTAGATGGATAAA

Coding sequence (CDS)

ATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA

Protein sequence

MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQVLS*

Homology

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BLAST of CsGy3G002130 vs. NCBI nr
Match: XP_011650372.1 (uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hypothetical protein Csa_010190 [Cucumis sativus])

HSP 1 Score: 373 bits (958), Expect = 1.00e-129
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206

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BLAST of CsGy3G002130 vs. NCBI nr
Match: XP_004147238.2 (uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 359 bits (921), Expect = 3.79e-124
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 202

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BLAST of CsGy3G002130 vs. NCBI nr
Match: XP_008448773.1 (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa] >TYK12053.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa])

HSP 1 Score: 338 bits (868), Expect = 4.52e-116
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGR
Sbjct: 1   MRHASKDLLHLERKDLSTSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           V+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLMLGIADLHTPEAV AAE
Sbjct: 61  VQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206
           SRK SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKASCRSKSKGKGKSKKRPKIQVLS 202

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BLAST of CsGy3G002130 vs. NCBI nr
Match: XP_038903017.1 (uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 uncharacterized protein LOC120089721 [Benincasa hispida])

HSP 1 Score: 308 bits (789), Expect = 4.88e-104
Identity = 183/207 (88.41%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLLYLERKDLSSSSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGR
Sbjct: 1   MRH-SKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKEPRRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMD+K+NAEKYDIEALDGNES+VI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVISEANKKLQMDAKDNAEKYDIEALDGNESKVIELDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSS-ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRS 180
           SAIIGN PVIPLTCSSS ESESEESSDDSITS+ +NDDNEKSDDQ TD SNR SVKLKRS
Sbjct: 121 SAIIGNQPVIPLTCSSSSESESEESSDDSITSNDNNDDNEKSDDQNTDHSNRSSVKLKRS 180

Query: 181 NSRKTSCRSKSKGKGKSKKRPKIQVLS 206
           NSRKTSCRSKSKGK KS+KRPKI  LS
Sbjct: 181 NSRKTSCRSKSKGKSKSEKRPKILELS 202

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BLAST of CsGy3G002130 vs. NCBI nr
Match: XP_023005549.1 (uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima])

HSP 1 Score: 282 bits (721), Expect = 1.26e-93
Identity = 167/210 (79.52%), Postives = 183/210 (87.14%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL LERKDL SSSL    ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGR
Sbjct: 1   MRHASKDLLCLERKDLPSSSL----ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+GNESEVI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKL 180
           SAIIGN PVIPL CSSS    ESESEESSDDSITSD++++DNEKSD Q TD  NRLSVKL
Sbjct: 121 SAIIGNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKL 180

Query: 181 KRSNSRKTSCRSKSKGKGKSKKRPKIQVLS 206
           KRS SR+ +CRS+S+ KGKS KRPKI  LS
Sbjct: 181 KRSKSRRANCRSESREKGKSNKRPKILELS 206

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BLAST of CsGy3G002130 vs. ExPASy TrEMBL
Match: A0A0A0L448 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 359 bits (921), Expect = 1.83e-124
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CsGy3G002130 vs. ExPASy TrEMBL
Match: A0A5D3CJH5 (E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00670 PE=4 SV=1)

HSP 1 Score: 338 bits (868), Expect = 2.19e-116
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGR
Sbjct: 1   MRHASKDLLHLERKDLSTSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           V+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLMLGIADLHTPEAV AAE
Sbjct: 61  VQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206
           SRK SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKASCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CsGy3G002130 vs. ExPASy TrEMBL
Match: A0A1S3BJW4 (uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=4 SV=1)

HSP 1 Score: 338 bits (868), Expect = 2.19e-116
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGR
Sbjct: 1   MRHASKDLLHLERKDLSTSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           V+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLMLGIADLHTPEAV AAE
Sbjct: 61  VQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206
           SRK SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKASCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CsGy3G002130 vs. ExPASy TrEMBL
Match: A0A6J1KZJ8 (uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498503 PE=4 SV=1)

HSP 1 Score: 282 bits (721), Expect = 6.10e-94
Identity = 167/210 (79.52%), Postives = 183/210 (87.14%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL LERKDL SSSL    ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGR
Sbjct: 1   MRHASKDLLCLERKDLPSSSL----ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+GNESEVI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKL 180
           SAIIGN PVIPL CSSS    ESESEESSDDSITSD++++DNEKSD Q TD  NRLSVKL
Sbjct: 121 SAIIGNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKL 180

Query: 181 KRSNSRKTSCRSKSKGKGKSKKRPKIQVLS 206
           KRS SR+ +CRS+S+ KGKS KRPKI  LS
Sbjct: 181 KRSKSRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of CsGy3G002130 vs. ExPASy TrEMBL
Match: A0A6J1F913 (uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443185 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 2.39e-93
Identity = 167/209 (79.90%), Postives = 182/209 (87.08%), Query Frame = 0


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL LERKDL SSS     ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGR
Sbjct: 1   MRHASKDLLCLERKDLPSSSF----ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+G+ESEVI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLK 180
           SAIIGN PVI L CSSS   ESESEESSDDSITSD+++DDNEKSD+Q TD  NRLSVKLK
Sbjct: 121 SAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLK 180

Query: 181 RSNSRKTSCRSKSKGKGKSKKRPKIQVLS 206
           R  SRKT+CRS+SK KGKS KRPKI  LS
Sbjct: 181 RLKSRKTNCRSESKEKGKSNKRPKILELS 205

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BLAST of CsGy3G002130 vs. TAIR 10
Match: AT1G71430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-22
Identity = 77/171 (45.03%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 6   KDLLYLERKDLSSSSLGVFNESSLLVC---KKNSTSKDPTRNEKPITEPASKSLVLGRVK 65
           KDLL LE K+ SSSS     +S+LL+C    K     +     KP   P  KS +LG++K
Sbjct: 8   KDLLKLELKNPSSSSA---MDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLK 67

Query: 66  DFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESA 125
            FLGV++EANKK    S+ N E Y+IEAL GNESE+I++DLMLG+ADL+TPEAV+AAE+A
Sbjct: 68  GFLGVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAA 127

Query: 126 IIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS 174
           I G  P          +ES +SS D    D  + ++E  + +  +CS + S
Sbjct: 128 IAGIGPA---------AESGDSSSD----DESDSESEGEESKSAECSRKRS 158

The following BLAST results are available for this feature:

BLAST of CsGy3G002130 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G002130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650372.1	1.00e-129	100.00	uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hy...	[more]
XP_004147238.2	3.79e-124	98.06	uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]	[more]
XP_008448773.1	4.52e-116	92.72	PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ...	[more]
XP_038903017.1	4.88e-104	88.41	uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 unchara...	[more]
XP_023005549.1	1.26e-93	79.52	uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy3G002130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L448	1.83e-124	98.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1	[more]
A0A5D3CJH5	2.19e-116	92.72	E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BJW4	2.19e-116	92.72	uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=...	[more]
A0A6J1KZJ8	6.10e-94	79.52	uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F913	2.39e-93	79.90	uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsGy3G002130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71430.1	5.7e-22	45.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	NOP protein chaperone 1	PFAM	PF15370	DUF4598	coord: 58..203 e-value: 5.8E-15 score: 55.7
IPR027921	NOP protein chaperone 1	PANTHER	PTHR28674	SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED	coord: 2..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G002130.2	CsGy3G002130.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000492	box C/D snoRNP assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0062064	box C/D snoRNP complex binding