CsGy2G025945 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G025945
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	Gy14Chr2: 33452993 .. 33454224 (+)
RNA-Seq Expression	CsGy2G025945
Synteny	CsGy2G025945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCATCTTCTTCATCTTCTTCCTCAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCACCAACGTCTTCTTCAACTTCAACTTCATCTTCAAGGTATTTCATTTTTCACTCCCTCTCGGATCTATTCCAATCCAATCCCTTCTCTTTCATTTCATTCTTCCCTTCATCTTTCACTTCTCTACTCAACCTCTATTTCTATCTCATTCCATCCTTCAATACCTGATCTGCTCTTTTTCCTTTATTCTTTCATTTTCAATCTCCTCTCCTTTGCTGCTTACGTTTTTTTCTCAATCCTTTGACGATCTTCTTCCACGACTCTCTCTCTCTCTCTCTTGTTTCGACTCTCCAAAAACAAGTGTGGTTGATTTATGAATTTGCTTTTTCAAATTTTACAGGTGTCGTGGTTTTGGTTTTAGGGCAAAATCCATATGATTTACAAATTCATATTCTAAGATACATAATTGACTTCTGTTTCTTCTTCTTGAAGATTGTCTGTTCTGTAGGGAGGATTTGATAGGTAGGTTGGGCCTTGTTGTTCCCTTTCCCTTCTCTATTTTTTTGTTTGTTCTGTATATCCCACTTTCTCCATAAGGTCGCTGATTTGATTTCTATTTCAATGGGATAATCTACAAAAGCATGATTTGACAAGATTTTCTTGATTTGACATAAAGATATCATCATTCTACAAGTTCTCCAAGAATTATAACTCAATTCATCCATGCTTTTAGCCAACACCACCTCATAAATTATTTATAATGTTCACCGATAGCTGTTTTTGATGGATGTTTTGGAATTTGATAGTTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTACGGAGTGGAAGACGACGACAACAACAATGCGGTCACAAAGAAAGGGAGCAGCAATGGGAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCAGGATTTGTGAAGGCAAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCGGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTAATATGTTTAGGCCTTCATTTGGGTTTTTTTCTTTTCATTCTTGGTCTTAAATATAGCTCTGTAGTCTTAAAACTTTTGTAGTCCTTTTTAGTTTCCTGCATTTTGTCGAACTCCTTTCCATAAACTTCAAACGACAAATGAGATATCATATCA

mRNA sequence

TCTTCATCTTCTTCATCTTCTTCCTCAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCACCAACGTCTTCTTCAACTTCAACTTCATCTTCAAGGTGTCGTGGTTTTGGTTTTAGGGCAAAATCCATATGATTTACAAATTCATATTCTAAGATACATAATTGACTTCTGTTTCTTCTTCTTGAAGATTGTCTGTTCTGTAGGGAGGATTTGATAGTTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTACGGAGTGGAAGACGACGACAACAACAATGCGGTCACAAAGAAAGGGAGCAGCAATGGGAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCAGGATTTGTGAAGGCAAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCGGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTAATATGTTTAGGCCTTCATTTGGGTTTTTTTCTTTTCATTCTTGGTCTTAAATATAGCTCTGTAGTCTTAAAACTTTTGTAGTCCTTTTTAGTTTCCTGCATTTTGTCGAACTCCTTTCCATAAACTTCAAACGACAAATGAGATATCATATCA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTACGGAGTGGAAGACGACGACAACAACAATGCGGTCACAAAGAAAGGGAGCAGCAATGGGAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCAGGATTTGTGAAGGCAAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCGGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKVKSGTSVGIKWVKNQYQKKVSK*

Homology

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BLAST of CsGy2G025945 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 1.38e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

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BLAST of CsGy2G025945 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146 bits (368), Expect = 1.40e-43
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 87

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BLAST of CsGy2G025945 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (358), Expect = 2.15e-41
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVS 87
           VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 AVGAQKVKSGTSVGIKWVKNQYQKKKS 86

[Close]

BLAST of CsGy2G025945 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (361), Expect = 2.43e-41
Identity = 80/88 (90.91%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD    V KKGSSNG+SSKKM EVKAAASAGFVKAKAVA
Sbjct: 91  MGSKAPSWADQWGSGNYGVEDDDK--MVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVA 150

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
            VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 151 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 176

[Close]

BLAST of CsGy2G025945 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 1.54e-38
Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD    V KKGS NG+SSKKM EVKAAASAGFVKAKAVA
Sbjct: 80  MGSKAPSWADQWGSGNYGVEDDDK--MVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 139

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKK 85
            VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 140 AVGAQKVKSGTSVGIKWVKNQYQKK 162

[Close]

BLAST of CsGy2G025945 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 6.70e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of CsGy2G025945 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 9.49e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

[Close]

BLAST of CsGy2G025945 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.15e-33
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSG++G E+DDN   VTKK SS+G SSKKMAE KAAASAGF KAKA A
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNK-LVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVS 87
          +VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 SVGAQKVKSGTSVGLKWVKKQYQKKSS 85

[Close]

BLAST of CsGy2G025945 vs. ExPASy TrEMBL
Match: A0A2N9I6Q9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47686 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 5.59e-29
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSW DQW + +YG +++D++  +TK G+S+GN   K+AE KAAAS GF KAKA A
Sbjct: 1  MGSKAPSWTDQWSTDSYGGKENDDDKLMTKVGNSSGN---KVAEAKAAASVGFDKAKAAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          +V AQKVKSGTS+GIKWVKNQYQKKVSK
Sbjct: 61 SVSAQKVKSGTSLGIKWVKNQYQKKVSK 85

[Close]

BLAST of CsGy2G025945 vs. ExPASy TrEMBL
Match: A0A2G5E5C3 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 7.94e-29
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVE-DDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAV 60
          M  +APSWADQWGSG YG + +DD+NN  TKKGSS   S KKMA++K+ ASAG  KAKA 
Sbjct: 1  MAKEAPSWADQWGSGGYGADPEDDHNN--TKKGSSG--SGKKMADMKSTASAGLDKAKAA 60

Query: 61 ATVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          A VGAQKVKSGTSVGIKW+KNQYQKK SK
Sbjct: 61 AAVGAQKVKSGTSVGIKWMKNQYQKKTSK 85

[Close]

BLAST of CsGy2G025945 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 7  SWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQK 66
          SWA+QW S      +  ++   T  G   G SSK     K    AG  K KA A+ G +K
Sbjct: 5  SWAEQWDS------NQQSSGKTTHGGEGGGASSK----YKEKVGAGLGKTKAAASSGLKK 64

Query: 67 VKSGTSVGIKWVKNQYQKKVSK 89
          VK GTS+G+ WVK++Y K  +K
Sbjct: 65 VKIGTSLGLNWVKDKYNKTTTK 76

[Close]

BLAST of CsGy2G025945 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 7  SWADQW-GSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQ 66
          SWADQW  SG+        + AV +  SS   ++    + K     G  K KAVA+ G +
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVR--SSGSGATSNTTKYKEKMGQGLDKTKAVASSGFK 64

Query: 67 KVKSGTSVGIKWVKNQYQKKVSK 89
          K+K+G+++G +WVK++Y K   K
Sbjct: 65 KLKTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:

BLAST of CsGy2G025945 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G025945 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059574.1	1.38e-50	100.00	hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865...	[more]
KAG7010736.1	1.40e-43	90.91	hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570886.1	2.15e-41	89.66	hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034974.1	2.43e-41	90.91	hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6604861.1	1.54e-38	89.41	hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy2G025945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKS5	6.70e-51	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LR11	9.49e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1	[more]
A0A5C7HG95	1.15e-33	80.46	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1	[more]
A0A2N9I6Q9	5.59e-29	68.18	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47686 PE=4 SV=1	[more]
A0A2G5E5C3	7.94e-29	71.91	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4...	[more]

BLAST of CsGy2G025945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	1.2e-05	40.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	1.8e-04	36.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR33386:SF13	ANKYRIN REPEAT PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G025945.1	CsGy2G025945.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007229	integrin-mediated signaling pathway