CsGy2G025765 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G025765
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	SIL1
Location	Gy14Chr2: 33237563 .. 33237752 (-)
RNA-Seq Expression	CsGy2G025765
Synteny	CsGy2G025765

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAGCTTTTCCGGCTTGAGAAGCATTAGAGAAATGACTGAGGAGTTCCTCCATCCACCTTTCAGTGATAAGGGTGGCTTTTTATGGCGTGTTGGGGTGTGCACCATTATTTGGGATATCTGGGGCGAGAGGAATGACAGAGTGTTTAGGGGCAGAGAGGGGGCATAGTGAGGTTTGGTCTTTGGCAAGA

mRNA sequence

GTTAGCTTTTCCGGCTTGAGAAGCATTAGAGAAATGACTGAGGAGTTCCTCCATCCACCTTTCAGTGATAAGGGTGGCTTTTTATGGCGTGTTGGGGTGTGCACCATTATTTGGGATATCTGGGGCGAGAGGAATGACAGAGTGTTTAGGGGCAGAGAGGGGGCATAGTGAGGTTTGGTCTTTGGCAAGA

Coding sequence (CDS)

ATGACTGAGGAGTTCCTCCATCCACCTTTCAGTGATAAGGGTGGCTTTTTATGGCGTGTTGGGGTGTGCACCATTATTTGGGATATCTGGGGCGAGAGGAATGACAGAGTGTTTAGGGGCAGAGAGGGGGCATAG

Protein sequence

MTEEFLHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGREGA*

Homology

[Close]

BLAST of CsGy2G025765 vs. NCBI nr
Match: TYK11104.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 2.52e-16
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MTEEF-LHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGRE 42
           M EEF LHPPF+DKGGFLW V V T+IWDIWGERN RVFR RE
Sbjct: 283 MIEEFVLHPPFNDKGGFLWHVEVLTVIWDIWGERNVRVFRSRE 325

[Close]

BLAST of CsGy2G025765 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.64e-15
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MTEEFL-HPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGREGA 44
           M EEFL H PF DKG FLW  GVC ++WDIWG+RNDRV RGR G 
Sbjct: 349 MIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRGRRGC 393

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BLAST of CsGy2G025765 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.17e-15
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MTEEF-LHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGRE 42
           MTE F LHPPF +KG FLW   VC I+WDIWGERNDRVFRG++
Sbjct: 313 MTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKD 355

[Close]

BLAST of CsGy2G025765 vs. NCBI nr
Match: KAA0062879.1 (DExH-box ATP-dependent RNA helicase DExH10-like [Cucumis melo var. makuwa] >TYK22512.1 DExH-box ATP-dependent RNA helicase DExH10-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 5.42e-12
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 3  EEFLHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGREGA 44
          EEFL  PF DK GFLW VG C I+WD+WG+RN++V  G++GA
Sbjct: 56 EEFLPRPFKDKWGFLWVVGACAIVWDVWGDRNEQV-NGKKGA 96

[Close]

BLAST of CsGy2G025765 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.81e-12
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 3  EEFLHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGRE 42
          E  L  P  +KG FLW VGVC +IW++WGERN+RVFRG E
Sbjct: 36 EFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVE 75

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BLAST of CsGy2G025765 vs. ExPASy TrEMBL
Match: A0A5D3CIV0 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00040 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.22e-16
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MTEEF-LHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGRE 42
           M EEF LHPPF+DKGGFLW V V T+IWDIWGERN RVFR RE
Sbjct: 283 MIEEFVLHPPFNDKGGFLWHVEVLTVIWDIWGERNVRVFRSRE 325

[Close]

BLAST of CsGy2G025765 vs. ExPASy TrEMBL
Match: A0A5A7VGR5 (Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00280 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.92e-16
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MTEEFL-HPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGREGA 44
           M EEFL H PF DKG FLW  GVC ++WDIWG+RNDRV RGR G 
Sbjct: 349 MIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRGRRGC 393

[Close]

BLAST of CsGy2G025765 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.02e-15
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MTEEF-LHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGRE 42
           MTE F LHPPF +KG FLW   VC I+WDIWGERNDRVFRG++
Sbjct: 313 MTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKD 355

[Close]

BLAST of CsGy2G025765 vs. ExPASy TrEMBL
Match: A0A5D3DFZ0 (DExH-box ATP-dependent RNA helicase DExH10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.62e-12
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 3  EEFLHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGREGA 44
          EEFL  PF DK GFLW VG C I+WD+WG+RN++V  G++GA
Sbjct: 56 EEFLPRPFKDKWGFLWVVGACAIVWDVWGDRNEQV-NGKKGA 96

[Close]

BLAST of CsGy2G025765 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.81e-12
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 3  EEFLHPPFSDKGGFLWRVGVCTIIWDIWGERNDRVFRGRE 42
          E  L  P  +KG FLW VGVC +IW++WGERN+RVFRG E
Sbjct: 36 EFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVE 75

The following BLAST results are available for this feature:

BLAST of CsGy2G025765 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G025765 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11104.1	2.52e-16	79.07	SIL1 [Cucumis melo var. makuwa]	[more]
KAA0066908.1	1.64e-15	68.89	mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa]	[more]
TYK19563.1	4.17e-15	72.09	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
KAA0062879.1	5.42e-12	61.90	DExH-box ATP-dependent RNA helicase DExH10-like [Cucumis melo var. makuwa] >TYK2...	[more]
TYK23653.1	5.81e-12	62.50	SIL1 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy2G025765 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIV0	1.22e-16	79.07	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00040 PE=4 SV=1	[more]
A0A5A7VGR5	7.92e-16	68.89	Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3D7T2	2.02e-15	72.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFZ0	2.62e-12	61.90	DExH-box ATP-dependent RNA helicase DExH10-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DJ76	2.81e-12	62.50	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1	[more]

BLAST of CsGy2G025765 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G025765.1	CsGy2G025765.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098660	inorganic ion transmembrane transport
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0022804	active transmembrane transporter activity
molecular_function	GO:0140657	ATP-dependent activity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0015318	inorganic molecular entity transmembrane transporter activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0003676	nucleic acid binding