CsGy2G019747 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G019747
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Zinc finger and BTB domain-containing protein 47
Location	Gy14Chr2: 28987190 .. 28987537 (-)
RNA-Seq Expression	CsGy2G019747
Synteny	CsGy2G019747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCATCGGCCAACCCATACAGCCTAGAAAAAGGGGCCGACCTCGTAAGGTTCTCGAGGAACAACAAAACGAGCAGGAGAGCAAGAAGCCGCCGCCGCCGTTGCTGGAAGTTGCAGAAAATCCACCGGAGAAGAAAATTAAAGGCACTGTGGATGAAGCGGCGCTGGGTTCCATGATAGAAGGTTCGAAAGAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAA

mRNA sequence

ATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCATCGGCCAACCCATACAGCCTAGAAAAAGGGGCCGACCTCGTAAGGTTCTCGAGGAACAACAAAACGAGCAGGAGAGCAAGAAGCCGCCGCCGCCGTTGCTGGAAGTTGCAGAAAATCCACCGGAGAAGAAAATTAAAGGCACTGTGGATGAAGCGGCGCTGGGTTCCATGATAGAAGGTTCGAAAGAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAA

Coding sequence (CDS)

ATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCATCGGCCAACCCATACAGCCTAGAAAAAGGGGCCGACCTCGTAAGGTTCTCGAGGAACAACAAAACGAGCAGGAGAGCAAGAAGCCGCCGCCGCCGTTGCTGGAAGTTGCAGAAAATCCACCGGAGAAGAAAATTAAAGGCACTGTGGATGAAGCGGCGCTGGGTTCCATGATAGAAGGTTCGAAAGAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPPPLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS*

Homology

[Close]

BLAST of CsGy2G019747 vs. NCBI nr
Match: KGN62596.1 (hypothetical protein Csa_022088 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 3.42e-68
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115
           PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of CsGy2G019747 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 2.25e-53
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK--P 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGI GQ IQPRKRGRPRKVL+EQQNEQE+KK  P
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI-GQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60

Query: 61  PPPLL-EVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115
           PPPLL EV ENPPEKKIK TVDE   GS+ EGSK+EEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

[Close]

BLAST of CsGy2G019747 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 161 bits (407), Expect = 1.08e-48
Identity = 95/115 (82.61%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60
           MGKKK QKTKEIAVAIAETS SKLADDGI GQ IQPRKRGRPRKVL+E QN+QE+KK  P
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGI-GQSIQPRKRGRPRKVLDEPQNKQENKKLLP 60

Query: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115
           PL EVAENPPEKK K TVD+   GSM EGSK+ EPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PLPEVAENPPEKKAKTTVDQPPPGSMEEGSKQGEPKTGDGSRSRGRRKNKPRKSS 114

[Close]

BLAST of CsGy2G019747 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118 bits (296), Expect = 9.26e-32
Identity = 80/121 (66.12%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGII---GQPIQPRKRGRPRKVLEEQQNEQESKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DDG     GQ +QPRKRGRPRKVL+E  ++   KK
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDD---KK 60

Query: 61  PPPPLLEVAENPPEKKIKGTVDEAALGSMIEGSKE---EEPKTGDGSRSRGRRKNKPRKS 115
            PPP  +VA+ P +KK K T DE    SM   SK+   EEPK+GDGSRSRGRRKNKPRKS
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPP-DSMEGASKQHESEEPKSGDGSRSRGRRKNKPRKS 117

[Close]

BLAST of CsGy2G019747 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114 bits (285), Expect = 4.47e-30
Identity = 78/121 (64.46%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGII---GQPIQPRKRGRPRKVLEEQQNEQESKK 60
           MGKKKTQKTK+I+VAIAE STSKL DDG     GQ +QPRKRGRPRKVL+E  +++  K 
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDK--KL 60

Query: 61  PPPPLLEVAENPPEKKIKGTVDEAALGSMIEGSKE---EEPKTGDGSRSRGRRKNKPRKS 115
            PPP  +VA+ P +KK K T DE  + SM   SK+   EEPK+GDGSRSRGRRKNKPRKS
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPPI-SMEGASKQHESEEPKSGDGSRSRGRRKNKPRKS 118

[Close]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 1.66e-68
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115
           PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.09e-53
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK--P 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGI GQ IQPRKRGRPRKVL+EQQNEQE+KK  P
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI-GQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60

Query: 61  PPPLL-EVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115
           PPPLL EV ENPPEKKIK TVDE   GS+ EGSK+EEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

[Close]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 5.45e-30
Identity = 79/121 (65.29%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGII---GQPIQPRKRGRPRKVLEEQQNEQESKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DDG     GQ  QPRKRGRPRKVL+E  +++  K 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPDDK--KL 92

Query: 61  PPPPLLEVAENPPEKKIKGTVDEAALGSMIEGSKE---EEPKTGDGSRSRGRRKNKPRKS 115
            PPP  +VA+ P +KK K T DE  + SM   SK+   EEPK+GDGSRSRGRRKNKPRKS
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDEPPI-SMEGASKQQESEEPKSGDGSRSRGRRKNKPRKS 150

[Close]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL
Match: A0A251R9L0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.03e-11
Identity = 57/135 (42.22%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAET-STSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPP 60
           MGKKK QKTKE++VAIAE  ST          QP  PRKRGRPRK++E+ ++ +E   P 
Sbjct: 1   MGKKKPQKTKELSVAIAEAPSTGDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQSTPQ 60

Query: 61  PPLLEVAENPPE---KKIKGTVDE----------------AALGSMIEGSKEEEPKTGDG 115
                 A    E   KK K T DE                 +  S+  G+K+EE +    
Sbjct: 61  TEEAAAAAEDVEEQSKKAKATEDEDQQEEEQQEQPKIKEEPSSASVRGGAKKEEGQARQP 120

[Close]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL
Match: A0A314ZHL5 (Neuromodulin OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07055 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.25e-11
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAET-STSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPP 60
           MGKKK QKTKE++VAIAE  ST          QP  PRKRGRPRK++E+ ++ +E   P 
Sbjct: 1   MGKKKPQKTKELSVAIAEAPSTGDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQSTPQ 60

Query: 61  PPLLEVAENPPE---KKIKGTVDE-----------------AALGSMIEGSKEEEPKTGD 115
                 A    E   KK K T DE                  +  S+  G+K+EE +   
Sbjct: 61  TEEAAAAAEDVEEQSKKAKATEDEDQQQEEQQEQPKIKEEEPSSASVRGGAKKEEGQARQ 120

The following BLAST results are available for this feature:

BLAST of CsGy2G019747 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G019747 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62596.1	3.42e-68	100.00	hypothetical protein Csa_022088 [Cucumis sativus]	[more]
KAA0065239.1	2.25e-53	87.29	zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa]	[more]
XP_038884964.1	1.08e-48	82.61	uncharacterized protein LOC120075548 [Benincasa hispida]	[more]
KAG7020516.1	9.26e-32	66.12	hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023537340.1	4.47e-30	64.46	uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRH2	1.66e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1	[more]
A0A5A7VIE6	1.09e-53	87.29	Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1KLK8	5.45e-30	65.29	uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353...	[more]
A0A251R9L0	5.03e-11	42.22	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1	[more]
A0A314ZHL5	7.25e-11	41.91	Neuromodulin OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07055 PE=4 SV=...	[more]

BLAST of CsGy2G019747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..115
None	No IPR available	PANTHER	PTHR37615	NUCLEOPORIN NUP159-LIKE	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G019747.1	CsGy2G019747.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane