CsGy2G019080 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G019080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	calcium-binding protein-like
Location	Gy14Chr2: 28608468 .. 28609287 (+)
RNA-Seq Expression	CsGy2G019080
Synteny	CsGy2G019080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGTGTAATAGATATCATCTCAAAGAGCAAAAAGAAAAAAGAAAAAAAAAAAAAACCATCTCCTTGTGTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCCCATAGAGAAAAATCTAAGGCAAACAAAAACTATATTATCATCAACACAAAGATATATTATTAGAGCTTACGTTCTTGAATATCATTGAAATGGCAATGTCAAGGTCTCAACTGAAGTTGACTAGGGATGAGGTTAGGGAGATCTTAGAAGAGCATGACGTGGACGGTGATGGTAGCCTGACGAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTTCTATGATGTCCTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAGGAGAAGCAGAGATGGAGAATCTTATTGACTATGTCATGAGGTTTCAGACCCCAAGGGCCCCAAAGACCCCAAAGGTCCCTAAGGTGCCAGCCCAAAAGCCTTGCCATGATGGTAAATCAATTGTGTAATAATCTTAGCTTATTTCTATTTATTATGTGTCCGTCTTCAGTCTTCGTCTACGTCTTCATCTTGTTTTTCAGTCCATATAGTTTATGTTACAAATTGAGCCATGGCTGTGCTCAAATTGGCAATTATCCACGTATGTTCGTTATCTGCAGTATTGTGTGTCACTGGTAATAAAATTATCTTCTTGTTGTATCCATAAATTATTATATAATAAACATTCCTAAACTATTAAAAATGTCAGATTTTCAATTTCATTTCATGCCATCGTGTGATTTATTATTT

mRNA sequence

GATGTGTAATAGATATCATCTCAAAGAGCAAAAAGAAAAAAGAAAAAAAAAAAAAACCATCTCCTTGTGTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCCCATAGAGAAAAATCTAAGGCAAACAAAAACTATATTATCATCAACACAAAGATATATTATTAGAGCTTACGTTCTTGAATATCATTGAAATGGCAATGTCAAGGTCTCAACTGAAGTTGACTAGGGATGAGGTTAGGGAGATCTTAGAAGAGCATGACGTGGACGGTGATGGTAGCCTGACGAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTTCTATGATGTCCTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAGGAGAAGCAGAGATGGAGAATCTTATTGACTATGTCATGAGGTTTCAGACCCCAAGGGCCCCAAAGACCCCAAAGGTCCCTAAGGTGCCAGCCCAAAAGCCTTGCCATGATGGTAAATCAATTGTGTAATAATCTTAGCTTATTTCTATTTATTATGTGTCCGTCTTCAGTCTTCGTCTACGTCTTCATCTTGTTTTTCAGTCCATATAGTTTATGTTACAAATTGAGCCATGGCTGTGCTCAAATTGGCAATTATCCACGTATGTTCGTTATCTGCAGTATTGTGTGTCACTGGTAATAAAATTATCTTCTTGTTGTATCCATAAATTATTATATAATAAACATTCCTAAACTATTAAAAATGTCAGATTTTCAATTTCATTTCATGCCATCGTGTGATTTATTATTT

Coding sequence (CDS)

ATGGCAATGTCAAGGTCTCAACTGAAGTTGACTAGGGATGAGGTTAGGGAGATCTTAGAAGAGCATGACGTGGACGGTGATGGTAGCCTGACGAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTTCTATGATGTCCTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAGGAGAAGCAGAGATGGAGAATCTTATTGACTATGTCATGAGGTTTCAGACCCCAAGGGCCCCAAAGACCCCAAAGGTCCCTAAGGTGCCAGCCCAAAAGCCTTGCCATGATGGTAAATCAATTGTGTAA

Protein sequence

MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADKDGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV*

Homology

[Close]

BLAST of CsGy2G019080 vs. NCBI nr
Match: KGN62514.1 (hypothetical protein Csa_021819 [Cucumis sativus])

HSP 1 Score: 222 bits (565), Expect = 6.28e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110
           DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110

[Close]

BLAST of CsGy2G019080 vs. NCBI nr
Match: KAA0060895.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 1.14e-61
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDG+LTKQEVMQALNSMG++MSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLG-EAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110
           DGDGKVDL  E E+E L+DYVMRFQTPR   TPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLTREDELEKLVDYVMRFQTPR---TPKVPKVPAQKPCHDGKSIV 108

[Close]

BLAST of CsGy2G019080 vs. NCBI nr
Match: KGN62521.1 (hypothetical protein Csa_021806 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 2.32e-41
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
          MA SRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG MMSFQKAHYGV+ ADK
Sbjct: 1  MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61 DGDGKVDLGEAEMENLIDYVMRFQ 84
          DGDG VDL   E+++L+DYVMRFQ
Sbjct: 61 DGDGAVDLEGGEIDSLVDYVMRFQ 84

[Close]

BLAST of CsGy2G019080 vs. NCBI nr
Match: KAE8652093.1 (hypothetical protein Csa_022146 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 5.49e-22
Identity = 48/82 (58.54%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGKVDLGEAEMENLIDYVM 81
          +D DGKVD  + E+E LID V+
Sbjct: 61 RDDDGKVD--QDELEKLIDCVI 80

[Close]

BLAST of CsGy2G019080 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_022521 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.14e-20
Identity = 38/87 (43.68%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
          M+ + ++L+L+R++++EI  EHD+DGDG L+  E+++A    GS++ F KAHYG++HAD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGKVDLGEAEMENLIDYVMRFQTPR 87
          +GDG ++  E E++ L+DY  +FQ  R
Sbjct: 61 NGDGFIE--EEELDKLVDYAQKFQHKR 85

[Close]

BLAST of CsGy2G019080 vs. ExPASy TrEMBL
Match: A0A0A0LNG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 3.04e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110
           DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110

[Close]

BLAST of CsGy2G019080 vs. ExPASy TrEMBL
Match: A0A5A7V4S6 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00280 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 5.54e-62
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDG+LTKQEVMQALNSMG++MSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLG-EAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110
           DGDGKVDL  E E+E L+DYVMRFQTPR   TPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLTREDELEKLVDYVMRFQTPR---TPKVPKVPAQKPCHDGKSIV 108

[Close]

BLAST of CsGy2G019080 vs. ExPASy TrEMBL
Match: A0A0A0LRC3 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 1.12e-41
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
          MA SRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG MMSFQKAHYGV+ ADK
Sbjct: 1  MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61 DGDGKVDLGEAEMENLIDYVMRFQ 84
          DGDG VDL   E+++L+DYVMRFQ
Sbjct: 61 DGDGAVDLEGGEIDSLVDYVMRFQ 84

[Close]

BLAST of CsGy2G019080 vs. ExPASy TrEMBL
Match: A0A0A0LP50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 1.56e-25
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGKVDLGEAEMENLIDYVMRFQT 85
          +D DGKVD  + E+E LID V+RFQT
Sbjct: 61 RDDDGKVD--QDELEKLIDCVIRFQT 84

[Close]

BLAST of CsGy2G019080 vs. ExPASy TrEMBL
Match: A0A5A7UYC0 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00250 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.54e-21
Identity = 39/87 (44.83%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60
          M+ + S+L+L+R++++EI  EHD+DGDG L+  E+++A    GS++ F KAHYG++HAD+
Sbjct: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGKVDLGEAEMENLIDYVMRFQTPR 87
          +GDG ++  E E++ L+DY  +FQ  R
Sbjct: 61 NGDGYIE--EEELDKLVDYAEKFQHKR 85

[Close]

BLAST of CsGy2G019080 vs. TAIR 10
Match: AT1G24620.1 (EF hand calcium-binding protein family )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 18/58 (31.03%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 13  DEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADKDGDGKVDLGE 71
           + +++    +D+DG+GS++ +E+ + L S+G   S  +    +   DKDGDG +D  E
Sbjct: 109 ENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEE 166

[Close]

BLAST of CsGy2G019080 vs. TAIR 10
Match: AT4G37010.1 (centrin 2 )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 12 RDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADKDGDGKVDLGE 71
          R E+REI +  D+DG GS+   E+  A+ S+G  M+ Q+ +  ++  DK+  G +D  E
Sbjct: 25 RREIREIFDLFDIDGSGSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQSGAIDFDE 83

[Close]

BLAST of CsGy2G019080 vs. TAIR 10
Match: AT4G37010.2 (centrin 2 )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 12 RDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADKDGDGKVDLGE 71
          R E+REI +  D+DG GS+   E+  A+ S+G  M+ Q+ +  ++  DK+  G +D  E
Sbjct: 29 RREIREIFDLFDIDGSGSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQSGAIDFDE 87

[Close]

BLAST of CsGy2G019080 vs. TAIR 10
Match: AT3G50360.1 (centrin2 )

HSP 1 Score: 40.8 bits (94), Expect = 8.3e-04
Identity = 18/59 (30.51%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 12 RDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADKDGDGKVDLGE 71
          + E++E  E  D DG G++  +E+  A+ ++G  M+ ++ +  ++  DKDG G +D  E
Sbjct: 25 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDE 83

The following BLAST results are available for this feature:

BLAST of CsGy2G019080 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G019080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62514.1	6.28e-73	100.00	hypothetical protein Csa_021819 [Cucumis sativus]	[more]
KAA0060895.1	1.14e-61	89.19	putative calcium-binding protein CML10 [Cucumis melo var. makuwa]	[more]
KGN62521.1	2.32e-41	84.52	hypothetical protein Csa_021806 [Cucumis sativus]	[more]
KAE8652093.1	5.49e-22	58.54	hypothetical protein Csa_022146 [Cucumis sativus]	[more]
KGN62516.1	1.14e-20	43.68	hypothetical protein Csa_022521 [Cucumis sativus]	[more]

BLAST of CsGy2G019080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG3	3.04e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1	[more]
A0A5A7V4S6	5.54e-62	89.19	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LRC3	1.12e-41	84.52	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=...	[more]
A0A0A0LP50	1.56e-25	60.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1	[more]
A0A5A7UYC0	5.54e-21	44.83	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CsGy2G019080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24620.1	1.7e-04	31.03	EF hand calcium-binding protein family	[more]
AT4G37010.1	4.9e-04	35.59	centrin 2	[more]
AT4G37010.2	4.9e-04	35.59	centrin 2	[more]
AT3G50360.1	8.3e-04	30.51	centrin2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 14..42 e-value: 8.2E-4 score: 28.7
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 14..43 e-value: 3.5E-6 score: 26.4
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 58..70 e-value: 0.07 score: 12.6
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 10..45 score: 13.341799
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 14..70 e-value: 1.80539E-11 score: 52.9353
None	No IPR available	GENE3D	1.10.238.10		coord: 1..95 e-value: 5.5E-13 score: 51.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..110
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 23..35
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 9..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G019080.2	CsGy2G019080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding