CsGy2G018410 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G018410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Small VCP/p97-interacting protein
Location	Gy14Chr2: 28118803 .. 28119990 (+)
RNA-Seq Expression	CsGy2G018410
Synteny	CsGy2G018410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCAATGCGTGAGTTGTTTAGACGTAGGTCAAAAGCAACAGAGAAAAGAAGAAGAACGATTGGCTTCCGTCGAAGCTCGTGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGTTTTTTTTCCTTTTTCCTTTACCTTTAACTTTCATTCCCAAATGTCTGTTCATCATGCTTCTTCTTTTTCAATCACAACGCCTTTTCATTTCTATTGGGGATTTCGTTGATCGTTTTGCCTTTTCAGTCGGTCCCCACAATTCCATTTTTGTCTGTGAACGTGAATTGTTTGGGATGTAACAATTCTGCAGGGGAATGAATTCTGTTTGAAAAATAATCGCACAACAGCTTGTTTGATTAGGGTTTTGTAGTTTGTCTACAAATTCCTTATAAATCTGTTGTTTTGAAAGTGTGATTTTATTTAGTAGTATGTAAAATTTAGCTTCTGTTAGAAACATGCCTGTTATCAAACTGATCTATAGTCTAGATCAGTTTAGTTTTATAAGCCTTCTTTTTCCAACAAAATTCGTAGTGCCGTAAAGGCTAAATAAGAAGTAAGCAAGAAAAGAGAAACTAGGAGTGCTCTAATTTGAGCTGATTGGATTGCTTCCACTAATTTTCACCTTATTAATGCCATTTGGTTTAAGTTGATTGCTTATTCATACCAAGGATGTGACTTGATAATGTATTGGCTACCAATTTTAGATTGAAATGGGAATTTCAAGTTAGGAACTTTGATGGGAATTATCCATGTGTTTTACACTTCTTTTAGATAAGAGATCCATGTGTTTTATACTGAAAGTGATATAAATATTTGCAGGCAAGAAGAGTTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTACCGCTAACAAGGGCGAACCAGTTCTTAAGGTCAGTAAATTTTAGCAGTTATTTTTCTTGTTTGTTAATTGATGTAAATTATATGGTAAGTTATAATTTTTTTCTTTATTGTTTGGGTGAGGGTGATGTATAGCTTAACCAACCCCATTACACGTTCACTCGTAGAAGATCTTTCACTTTTAGACACAATTTATTAGAGCATTTCACTGCTAGGCGTTGTTCGCTAGCAGTCGTTAATATAGCAAGCGATTTTAAATCTTCCTTCTTGTTTTTATGGATGCAGTGGAGTATGGGGTGA

mRNA sequence

ATGGGGCAATGCGTGAGTTGTTTAGACGTAGGTCAAAAGCAACAGAGAAAAGAAGAAGAACGATTGGCTTCCGTCGAAGCTCGTGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAGTTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTACCGCTAACAAGGGCGAACCAGTTCTTAAGTGGAGTATGGGGTGA

Coding sequence (CDS)

ATGGGGCAATGCGTGAGTTGTTTAGACGTAGGTCAAAAGCAACAGAGAAAAGAAGAAGAACGATTGGCTTCCGTCGAAGCTCGTGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAGTTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTACCGCTAACAAGGGCGAACCAGTTCTTAAGTGGAGTATGGGGTGA

Protein sequence

MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSATANKGEPVLKWSMG*

Homology

[Close]

BLAST of CsGy2G018410 vs. NCBI nr
Match: XP_011649565.1 (uncharacterized protein LOC101210682 [Cucumis sativus])

HSP 1 Score: 135 bits (340), Expect = 1.24e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSATANKGEPVLKWSMG
Sbjct: 61 QSATANKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 129 bits (325), Expect = 2.41e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD GQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA  NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 128 bits (322), Expect = 6.91e-37
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD G+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA  NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. NCBI nr
Match: XP_022951067.1 (uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_023002620.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023002621.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023537497.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537499.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537500.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >KAG6585707.1 hypothetical protein SDJN03_18440, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 4.00e-36
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD  QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA ANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 6.96e-36
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD  QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 20 MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 79

Query: 61 QSATANKGEPVLKWSMG 77
          QSA ANKGEPVLKWSMG
Sbjct: 80 QSANANKGEPVLKWSMG 96

[Close]

BLAST of CsGy2G018410 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 1.17e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD GQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA  NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.94e-36
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD  QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA ANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.94e-36
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD  QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA ANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. ExPASy TrEMBL
Match: A0A0A0LN85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354700 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.50e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSATANKGEPVLK 73
          QSATANKGEPVLK
Sbjct: 61 QSATANKGEPVLK 73

[Close]

BLAST of CsGy2G018410 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.59e-35
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLD GQ+Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSATANKGEPVLKWSMG 77
          QSA  NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CsGy2G018410 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 4  CVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSA 63
          C SC D  QK+QRKEEER AS EARAKAAEAAQRR+E+F+KSAAGRAA+AQL   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 TANKGEPVLKWSM 77
            NKGEPVLKW M
Sbjct: 63 NTNKGEPVLKWQM 75

The following BLAST results are available for this feature:

BLAST of CsGy2G018410 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G018410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649565.1	1.24e-39	100.00	uncharacterized protein LOC101210682 [Cucumis sativus]	[more]
XP_008444542.1	2.41e-37	96.10	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
XP_038886006.1	6.91e-37	94.81	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
XP_022951067.1	4.00e-36	93.51	uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 unchar...	[more]
KAG7020610.1	6.96e-36	93.51	hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsGy2G018410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAJ0	1.17e-37	96.10	uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=...	[more]
A0A6J1KLT2	1.94e-36	93.51	uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424...	[more]
A0A6J1GGM5	1.94e-36	93.51	uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A0A0LN85	1.50e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354700 PE=4 SV=1	[more]
A0A6J1K846	1.59e-35	90.91	uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013...	[more]

BLAST of CsGy2G018410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63905.1	2.4e-21	76.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..77
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR36813:SF1	TRANSMEMBRANE PROTEIN	coord: 1..77
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 1..73 e-value: 2.8E-12 score: 46.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G018410.2	CsGy2G018410.2	mRNA