CsGy2G018045 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G018045
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Arabinogalactan peptide
Location	Gy14Chr2: 27860796 .. 27862058 (-)
RNA-Seq Expression	CsGy2G018045
Synteny	CsGy2G018045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGAGAATGCATATATTCCCCGTCGATGCTCTTTGTGGAAAAGGGAACCACACCCATATATGAGCTGTCTTTCAACCATTCGCCAGCTTGCACCTCCCCGTTTCTCTCTATATATCTCTCCTTCTACTATTTCCCTTTCTCATTTCCCAATCAAACGGTTCTCTCCTCTCTCCTCTCTCCCGCCTCAACCCTAACCCCCCGCCCCCATTACCTCTTTTACCCAATGGCCGCCCTCTCCAAAGTTTCTCTCCTCGCTCTCATTGCCCTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGAGCTACCGGCCTTCGGATGTGGTGATTGATTTTGCCATGGACTCTTCCATGTATTTGTGATGGTCTGCTTTTCCTTTTTCTTTTTCTTTTCTCTCTTCAACTAAAACCTTGCGCCGCGGAGGAATTTGTTTTAGATGTTTTTCTAAGGGACTTTAATTTCTACACGTTTGGTACAGACGACCTCTTTTGTTTACACATTCTTATATATAGAATGCAGGTTGTGTTGGTTTGTTCACGATTGTGCTATATTTTGTTGGTTATGATTAGTAAATAAATTGTTTCGTTCTTTTTAAATACTCTCTTCTTCTTTACTCTTTCATGCATTCATTCATACGAACACACTCGCTTATTATATCTAACTGCAACAATTTCTTTGAGATTCTTCGCTTAGCCAAAACAATTTGGTAATTCTCACTGTAATTGATTGATTAATTTCTTCTTGAAGAGAGAGAGAGAGAGAAAAAAAAAAAAACCCCATCAGAAATCATTTTGTGTACTACCGAATTAAGTTGGGATTATTAAATTGTGGAATTCCAAGATTTGTAAGGCATATTTAATATTTGAAATCTGGACCAACAGAAGTCCAATTGAAGTAGAATTTGTGGGGCAGTGAGGCATGTGCAATGAATAATGAAAACCCGAAAGGGAAAGGTGCCAATAATTTTATGGTTGGCAATTTTTACAGCTAGAGAATTGATGACAAGAACATGGTTGCCTTTTTTGCTTTTCTTTTTTCTTCTCTAAGAAGGACGAATCCAAAGCATATAGAGAATTATTTATATTAATGAAATGGTATATTGGTTGATTTCTGTTGTCCACTAATAAAGTCTACTTGTGATCTTTGTGATG

mRNA sequence

GGAAAGAGAATGCATATATTCCCCGTCGATGCTCTTTGTGGAAAAGGGAACCACACCCATATATGAGCTGTCTTTCAACCATTCGCCAGCTTGCACCTCCCCGTTTCTCTCTATATATCTCTCCTTCTACTATTTCCCTTTCTCATTTCCCAATCAAACGGTTCTCTCCTCTCTCCTCTCTCCCGCCTCAACCCTAACCCCCCGCCCCCATTACCTCTTTTACCCAATGGCCGCCCTCTCCAAAGTTTCTCTCCTCGCTCTCATTGCCCTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGAGCTACCGGCCTTCGGATGTGGTGATTGATTTTGCCATGGACTCTTCCATGTATTTGTGATGGTCTGCTTTTCCTTTTTCTTTTTCTTTTCTCTCTTCAACTAAAACCTTGCGCCGCGGAGGAATTTGTTTTAGATGTTTTTCTAAGGGACTTTAATTTCTACACGTTTGGTACAGACGACCTCTTTTGTTTACACATTCTTATATATAGAATGCAGGTTGTGTTGGTTTGTTCACGATTGTGCTATATTTTGTTGGTTATGATTAGTAAATAAATTGTTTCGTTCTTTTTAAATACTCTCTTCTTCTTTACTCTTTCATGCATTCATTCATACGAACACACTCGCTTATTATATCTAACTGCAACAATTTCTTTGAGATTCTTCGCTTAGCCAAAACAATTTGGTAATTCTCACTGTAATTGATTGATTAATTTCTTCTTGAAGAGAGAGAGAGAGAGAAAAAAAAAAAAACCCCATCAGAAATCATTTTGTGTACTACCGAATTAAGTTGGGATTATTAAATTGTGGAATTCCAAGATTTGTAAGGCATATTTAATATTTGAAATCTGGACCAACAGAAGTCCAATTGAAGTAGAATTTGTGGGGCAGTGAGGCATGTGCAATGAATAATGAAAACCCGAAAGGGAAAGGTGCCAATAATTTTATGGTTGGCAATTTTTACAGCTAGAGAATTGATGACAAGAACATGGTTGCCTTTTTTGCTTTTCTTTTTTCTTCTCTAAGAAGGACGAATCCAAAGCATATAGAGAATTATTTATATTAATGAAATGGTATATTGGTTGATTTCTGTTGTCCACTAATAAAGTCTACTTGTGATCTTTGTGATG

Coding sequence (CDS)

ATGCTCTTTGTGGAAAAGGGAACCACACCCATATATGAGCTGTCTTTCAACCATTCGCCAGCTTGCACCTCCCCGTTTCTCTCTATATATCTCTCCTTCTACTATTTCCCTTTCTCATTTCCCAATCAAACGGTTCTCTCCTCTCTCCTCTCTCCCGCCTCAACCCTAACCCCCCGCCCCCATTACCTCTTTTACCCAATGGCCGCCCTCTCCAAAGTTTCTCTCCTCGCTCTCATTGCCCTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRPHYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI*

Homology

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BLAST of CsGy2G018045 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 236 bits (603), Expect = 3.80e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRP 60
           MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRP
Sbjct: 1   MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRP 60

Query: 61  HYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLAL 120
           HYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLAL
Sbjct: 61  HYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLAL 120

Query: 121 AFGSTLRI 128
           AFGSTLRI
Sbjct: 121 AFGSTLRI 128

[Close]

BLAST of CsGy2G018045 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 4.37e-18
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 51  SPASTLTPRPHYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAV 110
           SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS V
Sbjct: 52  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFV 111

Query: 111 SACLAAFLALAFGSTLRI 128
           SAC+AAF+ALAFGSTLRI
Sbjct: 112 SACVAAFVALAFGSTLRI 129

[Close]

BLAST of CsGy2G018045 vs. NCBI nr
Match: KAG6585732.1 (CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 3.20e-13
Identity = 62/126 (49.21%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 5   EKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRPHY-- 64
           EKG  P+   +        + F S+ L  Y F  S     +  SLLS    L+P P    
Sbjct: 147 EKGECPVMISNLE------ATFESVKLCGYSFLISNQRGLLSVSLLSIHLFLSPEPQQTN 206

Query: 65  LFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAF 124
           +      L   SL+ALIALI A++SVAAQEAPAPSPASPA+SIAPS VSAC A F+AL  
Sbjct: 207 ICNNGHRLQCFSLMALIALIIAVASVAAQEAPAPSPASPASSIAPSFVSACTAFFVALVL 266

Query: 125 GSTLRI 128
           GSTLRI
Sbjct: 267 GSTLRI 266

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BLAST of CsGy2G018045 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.63e-09
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126
           MAA+SKVS +AL+A++FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

[Close]

BLAST of CsGy2G018045 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 4.53e-09
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 63  LFYPMAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLA 122
           +F  MAA+SK S +AL+A++F + SVA   + E+PAP+PASPATS+ PS   AC+ AF+A
Sbjct: 20  IFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVA 79

Query: 123 LAFGSTLR 127
           L FGS L+
Sbjct: 80  LVFGSALK 87

[Close]

BLAST of CsGy2G018045 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 1.84e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRP 60
           MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRP
Sbjct: 1   MLFVEKGTTPIYELSFNHSPACTSPFLSIYLSFYYFPFSFPNQTVLSSLLSPASTLTPRP 60

Query: 61  HYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLAL 120
           HYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLAL
Sbjct: 61  HYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLAL 120

Query: 121 AFGSTLRI 128
           AFGSTLRI
Sbjct: 121 AFGSTLRI 128

[Close]

BLAST of CsGy2G018045 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.76e-09
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126
           MAA+SKVS +AL+A++FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

[Close]

BLAST of CsGy2G018045 vs. ExPASy TrEMBL
Match: A0A2P5DTQ4 (Arabinogalactan peptide OS=Parasponia andersonii OX=3476 GN=PanWU01x14_033560 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.32e-07
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 68  AALSKVSLLALIALIFALSSVA----AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 127
           A+ S  SL+ L+A+I  + SV     A EAPAPSPASPA++I+PS +SACLAA +AL FG
Sbjct: 3   ASSSNASLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFG 62

[Close]

BLAST of CsGy2G018045 vs. ExPASy TrEMBL
Match: A0A2Z6NC77 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.10e-07
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 69  ALSKVSLLALIALIFALSSVA-AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLR 128
           A + + LLA +A+IF++ S+A A +APAPSPASPATS++PS V+  +AA  ALAFGS LR
Sbjct: 2   ASTNMMLLATMAVIFSVISIASAADAPAPSPASPATSVSPSFVAGLVAAVAALAFGSNLR 61

[Close]

BLAST of CsGy2G018045 vs. ExPASy TrEMBL
Match: A0A2P5EL16 (Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.61e-07
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 71  SKVSLLALIALIFALSSVA----AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 128
           S  SL+ L+A+I  + SV     A EAPAPSPASPA++I+PS +SACLAA +AL FGS +
Sbjct: 6   SNASLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFGSAV 65

[Close]

BLAST of CsGy2G018045 vs. TAIR 10
Match: AT5G11740.1 (arabinogalactan protein 15 )

HSP 1 Score: 44.3 bits (103), Expect = 8.7e-05
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 69  ALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 128
           A+SK S++ L+ +I ++ + A  EAPAPSP S +++I+ S VSA +AA  AL FGS LRI
Sbjct: 2   AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

The following BLAST results are available for this feature:

BLAST of CsGy2G018045 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G018045 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62403.1	3.80e-78	100.00	hypothetical protein Csa_018595 [Cucumis sativus]	[more]
KAG6598305.1	4.37e-18	66.67	hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585732.1	3.20e-13	49.21	CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subs...	[more]
KGN55315.1	3.63e-09	59.38	hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat...	[more]
KAG7024335.1	4.53e-09	54.41	hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsGy2G018045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKU1	1.84e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1	[more]
Q96504	1.76e-09	59.38	CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1	[more]
A0A2P5DTQ4	2.32e-07	55.38	Arabinogalactan peptide OS=Parasponia andersonii OX=3476 GN=PanWU01x14_033560 PE...	[more]
A0A2Z6NC77	4.10e-07	59.02	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=...	[more]
A0A2P5EL16	4.61e-07	56.45	Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV...	[more]

BLAST of CsGy2G018045 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11740.1	8.7e-05	50.00	arabinogalactan protein 15	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G018045.1	CsGy2G018045.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane