CsGy2G015710 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy2G015710
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCoiled-coil domain-containing protein 18, putative isoform 2
LocationGy14Chr2: 15579535 .. 15580220 (-)
RNA-Seq ExpressionCsGy2G015710
SyntenyCsGy2G015710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAAAACAGTTGGAAGCCATTTTCGATCATATAATCCTTCGTTTCTCTTTCTAGAGCTGTGTGTTTGGGACGACTTGCTGTCGTTAAAGAAGATTGAAGAAAAGCTAAGAAGGAATTGTAGTAGTAATAATAACAATAATGGGAAGTATTGATAGAAAATCGTCCATTGAAAATGAGCCAAGAACTCTCAAAATGCATCAAATCCAATTTGCAAGAGTAAGTCTCTCTCTCTCTCTCTCTCTTTTTCAAAATTATTTTCACTATTTTATATTTTTTTGCTTTATTTTTTAGATTGGGTGATTGAATTTGGTGTTATATATATAGCTCATCATTTATTTTTTCTTAATTATGACCAATTTGGATTGATATATATTTCAGGAAGCAGCACTTTATGTAATGAACACAGCAACAATAGAAGAAGCGATGAAGATTTTCACAGAGGTAATTATTATTAATTAGATACAAATATATATACAAATTCTTTTTGGTATTACCCAATATATATAATTGAGGTGTGAATAAATTGGGTGGAAAATAATGGGTGCAGGGATTACAACCAGTGGAATGTAAAGCAATTATGGAAGATAAAGATTCAATAGTGAAAAATTGGTACCATGATGAAGAGATTGATGAGTCGTTACAACCTTTTTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAA

mRNA sequence

GTGAAAACAGTTGGAAGCCATTTTCGATCATATAATCCTTCGTTTCTCTTTCTAGAGCTGTGTGTTTGGGACGACTTGCTGTCGTTAAAGAAGATTGAAGAAAAGCTAAGAAGGAATTGTAGTAGTAATAATAACAATAATGGGAAGTATTGATAGAAAATCGTCCATTGAAAATGAGCCAAGAACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTAATGAACACAGCAACAATAGAAGAAGCGATGAAGATTTTCACAGAGGGATTACAACCAGTGGAATGTAAAGCAATTATGGAAGATAAAGATTCAATAGTGAAAAATTGGTACCATGATGAAGAGATTGATGAGTCGTTACAACCTTTTTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAA

Coding sequence (CDS)

ATGGGAAGTATTGATAGAAAATCGTCCATTGAAAATGAGCCAAGAACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTAATGAACACAGCAACAATAGAAGAAGCGATGAAGATTTTCACAGAGGGATTACAACCAGTGGAATGTAAAGCAATTATGGAAGATAAAGATTCAATAGTGAAAAATTGGTACCATGATGAAGAGATTGATGAGTCGTTACAACCTTTTTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAA

Protein sequence

MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMEDKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF*
Homology
BLAST of CsGy2G015710 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 188 bits (477), Expect = 4.49e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

BLAST of CsGy2G015710 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 164 bits (415), Expect = 1.30e-50
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIM-E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NT TIEEAMKIFTEGL+PVECKAI+ E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          DKDSI+KNWYHDEEIDE LQPF QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDE-LQPFCQLRDIVSAPF 92

BLAST of CsGy2G015710 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 149 bits (376), Expect = 1.09e-44
Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          MG+IDRKSSIENEPRTL+MHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI +D
Sbjct: 1  MGNIDRKSSIENEPRTLRMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-QD 60

Query: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          KDSI+ N+YH+EE DE LQ  YQ RDIVSAPF
Sbjct: 61 KDSIMGNYYHEEEDDE-LQSLYQPRDIVSAPF 90

BLAST of CsGy2G015710 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140 bits (353), Expect = 3.60e-41
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+ VECKAI ++
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
           +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61 DESIMENWFHEQEADE-LPPLYQLRDIVTAPF 91

BLAST of CsGy2G015710 vs. NCBI nr
Match: KAG6571348.1 (hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (349), Expect = 1.98e-40
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
           MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+  ECKAI ++
Sbjct: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70

Query: 61  KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
            +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 71  DESIMENWFHEQEADE-LPPLYQLRDIVTAPF 101

BLAST of CsGy2G015710 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 2.18e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

BLAST of CsGy2G015710 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 6.28e-51
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIM-E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NT TIEEAMKIFTEGL+PVECKAI+ E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          DKDSI+KNWYHDEEIDE LQPF QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDE-LQPFCQLRDIVSAPF 92

BLAST of CsGy2G015710 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 1.90e-38
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I ED
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI-ED 60

Query: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          +DS ++N  H+EE+DE L  FY+L DIVSAPF
Sbjct: 61 RDSSMQNCCHEEEVDE-LPSFYRLPDIVSAPF 90

BLAST of CsGy2G015710 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 3.70e-35
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          MG IDRKSSIENEPRTLKMHQIQFAREAALY++NT TI+EAM+IFTEGL+ VECKA  + 
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 K-DSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
            +   K  Y++EE+ + L+P Y+ RDIVSAPF
Sbjct: 66 NINGRKKQVYYEEELSD-LEPLYRFRDIVSAPF 97

BLAST of CsGy2G015710 vs. ExPASy TrEMBL
Match: A0A6P6TGV6 (uncharacterized protein LOC113701328 OS=Coffea arabica OX=13443 GN=LOC113701328 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.29e-23
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 0

Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60
          M S+DRKSSIENEPRTL + Q Q AREAALYVM+T ++EEA+ IFT+GL+PV    + E+
Sbjct: 1  MASLDRKSSIENEPRTLNIQQFQLAREAALYVMSTRSMEEALGIFTKGLEPV-VNCVREN 60

Query: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92
          + +++   Y D EI  +     QLRDI SAPF
Sbjct: 61 EATMMDYDYEDLEISHN-----QLRDIESAPF 86

BLAST of CsGy2G015710 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0

Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFT----EGLQPVE--- 60
           M  ++R+SSIE EP TL + Q++ ARE ALYVM T T+EEAM IFT    EGL+  E   
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERG 66

Query: 61  --CKAIMEDKDSIVKNWYHDEEIDESLQPFYQLR--DIVSAPF 93
             C  + +++D        D++ ++    F      DI +APF
Sbjct: 67  GRCINLKDEED--------DDDYEDERMMFMSPHAWDIHTAPF 101

BLAST of CsGy2G015710 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFT-----EGLQPVE-- 60
           M  ++R+SSIE EP TL + Q++ ARE ALYVM T T+EEAM IFT     EGL+  E  
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  ---CKAIMEDKDSIVKNWYHDEEIDESLQPFYQLR--DIVSAPF 93
              C  + +++D        D++ ++    F      DI +APF
Sbjct: 67  GGRCINLKDEED--------DDDYEDERMMFMSPHAWDIHTAPF 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_011649401.14.49e-60100.00uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ... [more]
XP_008460897.11.30e-5090.32PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo][more]
XP_038902606.11.09e-4483.70uncharacterized protein LOC120089256 [Benincasa hispida][more]
XP_023512402.13.60e-4172.83uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 ... [more]
KAG6571348.11.98e-4071.74hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LQ892.18e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1[more]
A0A1S3CDH26.28e-5190.32uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=... [more]
A0A6J1G8871.90e-3875.00uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516... [more]
A0A6J1DBC13.70e-3567.74uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6P6TGV68.29e-2355.43uncharacterized protein LOC113701328 OS=Coffea arabica OX=13443 GN=LOC113701328 ... [more]
Match NameE-valueIdentityDescription
AT4G33467.21.1e-0939.81unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
AT4G33467.11.4e-0939.42unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808:SF2EXPRESSED PROTEINcoord: 3..92
NoneNo IPR availablePANTHERPTHR34808EXPRESSED PROTEINcoord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G015710.2CsGy2G015710.2mRNA