CsGy2G011980 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G011980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Location	Gy14Chr2: 11916672 .. 11917857 (-)
RNA-Seq Expression	CsGy2G011980
Synteny	CsGy2G011980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCATCATAGAGCTAAGGAAAGAAGTGTGGATAATGTGGAGAGATCAGTTGTGAGAGATAATAGATCAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCACACACAAAAGCTGATTAATTGAAAATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGTTAATATCATCTTATAACTCGATTCTCTCTCTTTTAGCTCTCCCTTCTTGATTTCCAGTCGTTGTTCAGTGTGTGACTTGACATATATGCATATTCTATGTTGTGCTGCAAGTAATTAACTACAGCTGTTATATTCCTTGATAAGAAAAAGGAAAAGAAAGTGAATGGTGGATAAAATAGAATGTCGATCCCTAGGAACTTACATAAGCAATTCGGTTGATGGGGTTTAGTATGACAAAGATGGATGAGATTGTGAACTCTCTTTAGAGTTGGTGAGCTTCAAGAGTACTTAAAACTATCATTCTTATGTTTTATTAAACCCTCATATTACACACTGCAAATATCCTATCACTTCAAACTCCATATTTCTCACAACTACGAAAGGCTTCCCAATTTCATTTTCTGGTCCTCAAACACTCCATAAGATGATCATCCACAAGCTTCTTATATTGTCAAACTACCCCCTAATTGTTTCAGAAACCTAAAAGGAGATTTTATGACACATATGATTGATTTTAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTAAGTAATTAATCTCACATAATTCTAATATACATATCTTTTACTTTGAACTTAAATAACTGAAGGTAGGGCTAATTTGATATTCATAAATTGTTTGATTTAGATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAAATGCATTCAACACAACAGCTCCTAAATAAACCCTTTATATATCTATACATATACTTTCAATTTGATTTTTATATTTTTCCTATTGTAACAATGTGTTAATATATATATATATCTC

mRNA sequence

GGTTCATCATAGAGCTAAGGAAAGAAGTGTGGATAATGTGGAGAGATCAGTTGTGAGAGATAATAGATCAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCACACACAAAAGCTGATTAATTGAAAATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAAATGCATTCAACACAACAGCTCCTAAATAAACCCTTTATATATCTATACATATACTTTCAATTTGATTTTTATATTTTTCCTATTGTAACAATGTGTTAATATATATATATATCTC

Coding sequence (CDS)

ATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAA

Protein sequence

MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER*

Homology

[Close]

BLAST of CsGy2G011980 vs. NCBI nr
Match: XP_004153120.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hypothetical protein Csa_005912 [Cucumis sativus])

HSP 1 Score: 232 bits (591), Expect = 5.03e-77
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60
           MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG
Sbjct: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60

Query: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

[Close]

BLAST of CsGy2G011980 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo])

HSP 1 Score: 213 bits (543), Expect = 1.10e-69
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64

Query: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

[Close]

BLAST of CsGy2G011980 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 165 bits (417), Expect = 2.40e-50
Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 3   ATSTSINIFPFPSYQIFRSK----RKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDC 62
           A ++S NIFPF  Y++ RS      K+  ++I +  AA   S LLPKRCQKCGGKGAIDC
Sbjct: 10  AMASSNNIFPFSPYRLVRSSPPYTSKTKSSNISLAAAAAARS-LLPKRCQKCGGKGAIDC 69

Query: 63  PGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           PGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQRGER
Sbjct: 70  PGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER 116

[Close]

BLAST of CsGy2G011980 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 159 bits (402), Expect = 4.22e-48
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MAATSTSINIFPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60
           ++ ++ S + FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAID
Sbjct: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAID 67

Query: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of CsGy2G011980 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158 bits (400), Expect = 8.52e-48
Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 11  FPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKN 70
           FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDCPGCKGTG+N
Sbjct: 18  FPFPPHGFAILPQNKSRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRN 77

Query: 71  KKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           KKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 78  KKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of CsGy2G011980 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 2.44e-77
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60
           MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG
Sbjct: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60

Query: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

[Close]

BLAST of CsGy2G011980 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 5.31e-70
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64

Query: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

[Close]

BLAST of CsGy2G011980 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 2.04e-48
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MAATSTSINIFPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60
           ++ ++ S + FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAID
Sbjct: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAID 67

Query: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of CsGy2G011980 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 6.83e-47
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 11  FPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKN 70
           FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDC GCKGTG+N
Sbjct: 18  FPFPPHGFAILPQNKSRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCTGCKGTGRN 77

Query: 71  KKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           KKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 78  KKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of CsGy2G011980 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 2.83e-45
Identity = 74/112 (66.07%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 2   AATSTSIN-IFPFP------SYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKG 61
           + +S +IN IFPFP       +++  S          + F A  T + LPKRCQKCGGKG
Sbjct: 10  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFGAAATFS-LPKRCQKCGGKG 69

Query: 62  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG GGLTPEQRGER
Sbjct: 70  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER 120

[Close]

BLAST of CsGy2G011980 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-31
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 45  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRG 104
           K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCF+CQGFG+KSCP+CGKGGLTPEQRG
Sbjct: 49  KSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRG 108

Query: 105 ER 107
           ER
Sbjct: 109 ER 110

The following BLAST results are available for this feature:

BLAST of CsGy2G011980 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G011980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153120.1	5.03e-77	100.00	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hy...	[more]
XP_008459263.1	1.10e-69	95.19	PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo]	[more]
XP_038901776.1	2.40e-50	72.22	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_022963874.1	4.22e-48	68.81	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata]	[more]
XP_023521952.1	8.52e-48	74.75	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of CsGy2G011980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIM5	2.44e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1	[more]
A0A1S3C9W1	5.31e-70	95.19	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A6J1HLG5	2.04e-48	68.81	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JSI3	6.83e-47	73.74	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DHW0	2.83e-45	66.07	uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of CsGy2G011980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22630.1	2.6e-31	85.48	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXP...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 33..106
None	No IPR available	PANTHER	PTHR15852:SF55	PROTEIN EMBRYO SAC DEVELOPMENT ARREST 3, CHLOROPLASTIC ISOFORM X1	coord: 33..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G011980.2	CsGy2G011980.2	mRNA