CsGy2G008045 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G008045
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr2: 6851833 .. 6852156 (+)
RNA-Seq Expression	CsGy2G008045
Synteny	CsGy2G008045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAG

mRNA sequence

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAG

Coding sequence (CDS)

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAG

Protein sequence

MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFGTSVGEASKEVILKLKQVTSELLVSILITYFGLGWVGLDGRKL*

Homology

[Close]

BLAST of CsGy2G008045 vs. NCBI nr
Match: KAE8651731.1 (hypothetical protein Csa_006651 [Cucumis sativus])

HSP 1 Score: 214 bits (546), Expect = 3.99e-70
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSILITYFGLGWVGLDGRKL 107
           RYDFGTSVGEASKEVILKLKQVTSELLVSILITYFGLGWVGLDGRKL
Sbjct: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSILITYFGLGWVGLDGRKL 107

[Close]

BLAST of CsGy2G008045 vs. NCBI nr
Match: XP_031736702.1 (uncharacterized protein LOC105434728 [Cucumis sativus])

HSP 1 Score: 175 bits (444), Expect = 2.59e-51
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 253 MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 312

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSI 90
           RYDFGTSVGEASKEVILKLKQVTSELL  +
Sbjct: 313 RYDFGTSVGEASKEVILKLKQVTSELLYDV 342

[Close]

BLAST of CsGy2G008045 vs. NCBI nr
Match: XP_038890293.1 (uncharacterized protein LOC120079912 [Benincasa hispida] >XP_038890294.1 uncharacterized protein LOC120079912 [Benincasa hispida] >XP_038890295.1 uncharacterized protein LOC120079912 [Benincasa hispida])

HSP 1 Score: 144 bits (364), Expect = 6.16e-39
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+DLINSAVLDQD MGGLRWPL KA+SGDRFR+  VWHTVAKSYV+P VRL LRN D
Sbjct: 294 MEGIVDLINSAVLDQDAMGGLRWPLGKATSGDRFRVIGVWHTVAKSYVNPFVRLTLRNAD 353

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 87
           RYDF TS+GE +KEV +KLKQVTSELL
Sbjct: 354 RYDFRTSIGEVTKEVTMKLKQVTSELL 380

[Close]

BLAST of CsGy2G008045 vs. NCBI nr
Match: XP_022144530.1 (uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144531.1 uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144532.1 uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144533.1 uncharacterized protein LOC111014191 [Momordica charantia])

HSP 1 Score: 139 bits (350), Expect = 6.76e-37
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI  LINSAVLDQDV GGLRWPL KASSGDRFR+  VWHTVAKSYV+  +RLKLRN D
Sbjct: 292 MEGIAYLINSAVLDQDVKGGLRWPLGKASSGDRFRVVGVWHTVAKSYVNAFMRLKLRNAD 351

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 87
           RYDF TSVGEA+KE+ LKLKQ TSELL
Sbjct: 352 RYDFKTSVGEATKEITLKLKQFTSELL 378

[Close]

BLAST of CsGy2G008045 vs. NCBI nr
Match: XP_031736360.1 (uncharacterized protein LOC101218529 isoform X2 [Cucumis sativus])

HSP 1 Score: 134 bits (338), Expect = 2.24e-35
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SG+RFR+  VWHTV+K YV+P +RL+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGNRFRVVEVWHTVSKYYVNPFLRLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSILITYF 95
           RYD  TS+GEASKEV L LK VT ELL      YF
Sbjct: 339 RYDLSTSIGEASKEVTLNLKHVTFELLADYCFDYF 373

[Close]

BLAST of CsGy2G008045 vs. ExPASy TrEMBL
Match: A0A0A0LHA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083720 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 5.02e-54
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
          MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 1  MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60

Query: 61 RYDFGTSVGEASKEVILKLKQVTSELL 87
          RYDFGTSVGEASKEVILKLKQVTSELL
Sbjct: 61 RYDFGTSVGEASKEVILKLKQVTSELL 87

[Close]

BLAST of CsGy2G008045 vs. ExPASy TrEMBL
Match: A0A6J1CTY4 (uncharacterized protein LOC111014191 OS=Momordica charantia OX=3673 GN=LOC111014191 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 3.27e-37
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI  LINSAVLDQDV GGLRWPL KASSGDRFR+  VWHTVAKSYV+  +RLKLRN D
Sbjct: 292 MEGIAYLINSAVLDQDVKGGLRWPLGKASSGDRFRVVGVWHTVAKSYVNAFMRLKLRNAD 351

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 87
           RYDF TSVGEA+KE+ LKLKQ TSELL
Sbjct: 352 RYDFKTSVGEATKEITLKLKQFTSELL 378

[Close]

BLAST of CsGy2G008045 vs. ExPASy TrEMBL
Match: A0A0A0LHP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083700 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 5.51e-37
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SG+RFR+  VWHTV+K YV+P +RL+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGNRFRVVEVWHTVSKYYVNPFLRLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSILIT 93
           RYD  TS+GEASKEV L LK VT ELLVSI +T
Sbjct: 339 RYDLSTSIGEASKEVTLNLKHVTFELLVSIFLT 371

[Close]

BLAST of CsGy2G008045 vs. ExPASy TrEMBL
Match: A0A6J1HL67 (uncharacterized protein LOC111465552 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111465552 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 7.89e-35
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           ME ILDLINSA+LD+DV GGLRWPL KASSGDRF++   WHTV++SYV+P VR+KLRN D
Sbjct: 281 MEDILDLINSAILDKDVKGGLRWPLGKASSGDRFKVVGAWHTVSQSYVNPFVRIKLRNAD 340

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 87
           RYDF T VGE SKEV  K+K++TSELL
Sbjct: 341 RYDFKTLVGEVSKEVTFKMKRLTSELL 367

[Close]

BLAST of CsGy2G008045 vs. ExPASy TrEMBL
Match: A0A1S3B522 (uncharacterized protein LOC103485862 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485862 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 9.70e-35
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SGDRFR+  VWHTV+K YV+P+++L+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGDRFRVLEVWHTVSKYYVNPLLKLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 87
           RYD  TS+GEASKEV L LK+VT ELL
Sbjct: 339 RYDLRTSIGEASKEVTLSLKRVTFELL 365

[Close]

BLAST of CsGy2G008045 vs. TAIR 10
Match: AT3G54310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38430.1); Has 44 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 6   DLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFG 65
           +L +SAV+D  V GGL+WPL K+S  DR+ +  VWHTV  +Y++  +RL++R  DRYDF 
Sbjct: 248 ELTDSAVVDPTVKGGLKWPLGKSSCADRYIVCGVWHTVTTTYINQTMRLQIREADRYDFR 307

Query: 66  TSVGEASKEVILKLKQVTSELL 88
           T VG  S EV  KLK +++ LL
Sbjct: 308 TGVGGTSSEVNFKLKALSTILL 329

[Close]

BLAST of CsGy2G008045 vs. TAIR 10
Match: AT2G38430.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 6.2e-12
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 7   LINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFGT 66
           L+ SA +D +V GGLRWP  KA S D ++   V H  A  Y +  +RL++R  DR++  T
Sbjct: 282 LLESATVDPNVKGGLRWPFGKALSEDGYKEFEVCHVRATIYKNKTLRLRVRETDRFNETT 341

Query: 67  SVGEASKEVILKLKQVTSEL 87
             GE  +EV L LK + +++
Sbjct: 342 GTGETKREVSLTLKDIDTKI 361

The following BLAST results are available for this feature:

BLAST of CsGy2G008045 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G008045 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651731.1	3.99e-70	100.00	hypothetical protein Csa_006651 [Cucumis sativus]	[more]
XP_031736702.1	2.59e-51	96.67	uncharacterized protein LOC105434728 [Cucumis sativus]	[more]
XP_038890293.1	6.16e-39	80.46	uncharacterized protein LOC120079912 [Benincasa hispida] >XP_038890294.1 unchara...	[more]
XP_022144530.1	6.76e-37	80.46	uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144531.1 uncha...	[more]
XP_031736360.1	2.24e-35	68.42	uncharacterized protein LOC101218529 isoform X2 [Cucumis sativus]	[more]

BLAST of CsGy2G008045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHA6	5.02e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083720 PE=4 SV=1	[more]
A0A6J1CTY4	3.27e-37	80.46	uncharacterized protein LOC111014191 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LHP7	5.51e-37	72.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083700 PE=4 SV=1	[more]
A0A6J1HL67	7.89e-35	72.41	uncharacterized protein LOC111465552 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3B522	9.70e-35	72.41	uncharacterized protein LOC103485862 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CsGy2G008045 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54310.1	2.6e-18	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G38430.1	6.2e-12	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35481:SF1	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 2..86
None	No IPR available	PANTHER	PTHR35481	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G008045.1	CsGy2G008045.1	mRNA