CsGy2G005225 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G005225
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	SHSP domain-containing protein
Location	Gy14Chr2: 3572410 .. 3572730 (-)
RNA-Seq Expression	CsGy2G005225
Synteny	CsGy2G005225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAATAGTGGAGGTAGTAATAGAGTGGTTGTAATGCGTAGACGTCGATGGGTTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGGTTTACGAGATTGAAGAGTAGTTTTGGTTTGAAGGTATCGTTTTTGATGTCGTTGTCGAGAAGAATTAGAGAGATTGTGAGTAGAATGAAGGTTGTTGAAGATGTATGCCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATTTGA

mRNA sequence

ATGGGTCTTTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAATAGTGGAGGTAGTAATAGAGTGGTTGTAATGCGTAGACGTCGATGGGTTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGGTTTACGAGATTGAAGAGTAGTTTTGGTTTGAAGGTATCGTTTTTGATGTCGTTGTCGAGAAGAATTAGAGAGATTGTGAGTAGAATGAAGGTTGTTGAAGATGTATGCCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATTTGA

Coding sequence (CDS)

ATGGGTCTTTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAATAGTGGAGGTAGTAATAGAGTGGTTGTAATGCGTAGACGTCGATGGGTTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGGTTTACGAGATTGAAGAGTAGTTTTGGTTTGAAGGTATCGTTTTTGATGTCGTTGTCGAGAAGAATTAGAGAGATTGTGAGTAGAATGAAGGTTGTTGAAGATGTATGCCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATTTGA

Protein sequence

MGLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI*

Homology

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BLAST of CsGy2G005225 vs. NCBI nr
Match: KGN61039.1 (hypothetical protein Csa_021124 [Cucumis sativus])

HSP 1 Score: 209 bits (531), Expect = 7.20e-68
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60
           M LLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106
           FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of CsGy2G005225 vs. NCBI nr
Match: KAA0056096.1 (hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ96421.1 hypothetical protein E5676_scaffold546G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (492), Expect = 7.28e-62
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNS-GGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60
           MGLLEIAGIGGRRWECHYEKLNS GGSN    V++MRRRRW+KKMLKRGMKGFRLYRFTR
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106
           L+SSFGLKVSFLMSLSRRIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

[Close]

BLAST of CsGy2G005225 vs. NCBI nr
Match: KAG6599155.1 (Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (321), Expect = 5.32e-32
Identity = 74/105 (70.48%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60
           MGLLE AGIGGRRW   YEKL+   ++  VV  RRRW+KK LKRG KGFRLYR TR +S 
Sbjct: 452 MGLLETAGIGGRRWN-QYEKLHCEDND--VVKCRRRWMKKTLKRGKKGFRLYRLTRSRS- 511

Query: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105
           F LKVSFL+ +SRRIREIV+RMKV EDVC N+IF TQWGLP LSY
Sbjct: 512 FCLKVSFLVLMSRRIREIVNRMKV-EDVCANVIFFTQWGLPTLSY 551

[Close]

BLAST of CsGy2G005225 vs. NCBI nr
Match: KAF5946811.1 (hypothetical protein HYC85_017039 [Camellia sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 1.42e-12
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60
           MG  ++  +GGR W   Y++L S    +V V  RRRWV +M  + +KGFRL +  RL   
Sbjct: 1   MGFEDV--VGGR-WTTRYKRLTSNDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKRL--- 60

Query: 61  FGLKVSFLMSLSRRIR----EIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105
              K   ++ L RR+     E+V+RMK  +++CP IIFS QWGLPVLS+
Sbjct: 61  -NWKAFSIVMLPRRMAQIYAEVVNRMKT-DEICPAIIFSGQWGLPVLSH 100

[Close]

BLAST of CsGy2G005225 vs. NCBI nr
Match: EOY11805.1 (Uncharacterized protein TCM_026865 [Theobroma cacao])

HSP 1 Score: 70.1 bits (170), Expect = 3.24e-12
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 9   IGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSSFGLKVSFL 68
           +GG    C YEKL + G  R     RRRWVKKM   G+KG RL R  +LK+     V F 
Sbjct: 10  LGGHPVPCRYEKLRNVGDARP----RRRWVKKM-SGGLKGLRLSRSRKLKTL--CSVVFA 69

Query: 69  MSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105
             ++R   +I  R+K+   +CPNIIF+T WGLP LS+
Sbjct: 70  NRITRIYADIAHRLKMDGTLCPNIIFATHWGLPTLSH 99

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BLAST of CsGy2G005225 vs. ExPASy TrEMBL
Match: A0A0A0LJ29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 3.49e-68
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60
           M LLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106
           FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of CsGy2G005225 vs. ExPASy TrEMBL
Match: A0A5D3BCS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00490 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 3.53e-62
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNS-GGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60
           MGLLEIAGIGGRRWECHYEKLNS GGSN    V++MRRRRW+KKMLKRGMKGFRLYRFTR
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106
           L+SSFGLKVSFLMSLSRRIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

[Close]

BLAST of CsGy2G005225 vs. ExPASy TrEMBL
Match: A0A7J7H3I9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.88e-13
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60
           MG  ++  +GGR W   Y++L S    +V V  RRRWV +M  + +KGFRL +  RL   
Sbjct: 1   MGFEDV--VGGR-WTTRYKRLTSNDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKRL--- 60

Query: 61  FGLKVSFLMSLSRRIR----EIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105
              K   ++ L RR+     E+V+RMK  +++CP IIFS QWGLPVLS+
Sbjct: 61  -NWKAFSIVMLPRRMAQIYAEVVNRMKT-DEICPAIIFSGQWGLPVLSH 100

[Close]

BLAST of CsGy2G005225 vs. ExPASy TrEMBL
Match: A0A061F3B0 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.57e-12
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 9   IGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSSFGLKVSFL 68
           +GG    C YEKL + G  R     RRRWVKKM   G+KG RL R  +LK+     V F 
Sbjct: 10  LGGHPVPCRYEKLRNVGDARP----RRRWVKKM-SGGLKGLRLSRSRKLKTL--CSVVFA 69

Query: 69  MSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105
             ++R   +I  R+K+   +CPNIIF+T WGLP LS+
Sbjct: 70  NRITRIYADIAHRLKMDGTLCPNIIFATHWGLPTLSH 99

[Close]

BLAST of CsGy2G005225 vs. ExPASy TrEMBL
Match: A0A6A4KLK9 (SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21367 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.87e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 4   LEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLK-SSFG 63
           +EI+ + G RW   YEKL      +     RRRW  KM  R  +G RL R  +L   +F 
Sbjct: 128 IEISDVVGGRWRIRYEKLTGIDHEKAAARPRRRWAMKMNGR-FRGIRLPRCRKLNWRAFA 187

Query: 64  LKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105
           + +S    ++    EI++RMK+++D+CP I+FS  WGLPVLS+
Sbjct: 188 ILMSP-KRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

The following BLAST results are available for this feature:

BLAST of CsGy2G005225 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G005225 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61039.1	7.20e-68	99.06	hypothetical protein Csa_021124 [Cucumis sativus]	[more]
KAA0056096.1	7.28e-62	90.00	hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KAG6599155.1	5.32e-32	70.48	Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF5946811.1	1.42e-12	43.12	hypothetical protein HYC85_017039 [Camellia sinensis]	[more]
EOY11805.1	3.24e-12	45.36	Uncharacterized protein TCM_026865 [Theobroma cacao]	[more]

BLAST of CsGy2G005225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ29	3.49e-68	99.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1	[more]
A0A5D3BCS3	3.53e-62	90.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J7H3I9	6.88e-13	43.12	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1	[more]
A0A061F3B0	1.57e-12	45.36	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1	[more]
A0A6A4KLK9	1.87e-12	39.81	SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26292...	[more]

BLAST of CsGy2G005225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 10..105
None	No IPR available	PANTHER	PTHR35123:SF3	OS07G0633900 PROTEIN	coord: 10..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G005225.1	CsGy2G005225.1	mRNA