CsGy2G005035 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G005035
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr2: 3454523 .. 3454975 (-)
RNA-Seq Expression	CsGy2G005035
Synteny	CsGy2G005035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTGCGACCGCATCCATTGCAATGAGGATTCTCAAGTCCCTCTTCCTCTCGACCAATGGGCTATCTGGTGTTGGTGGTCTACAGGAAGCCTCTTCTCTTGGTGCTGCTCATTCAGCCTCGACCATATTGGCATAGTCTTTCTGATTGAAGTAAGAAATTGCCTGCACCAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAAGTCTTGAGAGCAGCTTTCGTTACTGTATCATCAGTGCTGGCCTGAAGTTCAACAATGAACTGAGGTCCTGGAAGTGTTTCTCAGCACTTGGTTATTTGCTATCAAGACCAAACCAACATCATCTGCTGGACCTTTCAGATTTTCATTGAAGGTTTTATTGCAAAACCCATAATCCTCATTTTGATGGCATATTCGATTTATCTGCTGCTGTGTTGCCGGGTCACCCAAAGCTGGATGAACAATGA

mRNA sequence

ATGACCTGCGACCGCATCCATTGCAATGAGGATTCTCAAGTCCCTCTTCCTCTCGACCAATGGGCTATCTGGTGTTGGTGGTCTACAGGAAGCCTCTTCTCTTGGTGCTGCTCATTCAGCCTCGACCATATTGGCATAGTCTTTCTGATTGAAGTAAGAAATTGCCTGCACCAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAAGTCTTGAGAGCAGCTTTCGTTACTGTATCATCAGTGCTGGCCTGAAGTTCAACAATGAACTGAGGTTTTATTGCAAAACCCATAATCCTCATTTTGATGGCATATTCGATTTATCTGCTGCTGTGTTGCCGGGTCACCCAAAGCTGGATGAACAATGA

Coding sequence (CDS)

ATGACCTGCGACCGCATCCATTGCAATGAGGATTCTCAAGTCCCTCTTCCTCTCGACCAATGGGCTATCTGGTGTTGGTGGTCTACAGGAAGCCTCTTCTCTTGGTGCTGCTCATTCAGCCTCGACCATATTGGCATAGTCTTTCTGATTGAAGTAAGAAATTGCCTGCACCAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAAGTCTTGAGAGCAGCTTTCGTTACTGTATCATCAGTGCTGGCCTGAAGTTCAACAATGAACTGAGGTTTTATTGCAAAACCCATAATCCTCATTTTGATGGCATATTCGATTTATCTGCTGCTGTGTTGCCGGGTCACCCAAAGCTGGATGAACAATGA

Protein sequence

MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCLPDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDEQ*

Homology

[Close]

BLAST of CsGy2G005035 vs. NCBI nr
Match: KGN61018.1 (hypothetical protein Csa_021204 [Cucumis sativus])

HSP 1 Score: 273 bits (699), Expect = 5.09e-93
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60
           MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL
Sbjct: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60

Query: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120
           PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE
Sbjct: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120

[Close]

BLAST of CsGy2G005035 vs. NCBI nr
Match: KAA0048112.1 (hypothetical protein E6C27_scaffold385G001910 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (450), Expect = 1.72e-54
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60
          MT DR HCNEDSQ PLPLDQWAIWCWWSTGSL SWCCSFSLDHIGIVFLIE  NCLH+CL
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHECL 60

Query: 61 PDLASTDSASLESSFRYCIISAGLKFNNEL 90
          PDLASTDSA LESSFRY I+SAGLKFNNEL
Sbjct: 61 PDLASTDSAGLESSFRYWIVSAGLKFNNEL 90

[Close]

BLAST of CsGy2G005035 vs. NCBI nr
Match: TYJ96440.1 (hypothetical protein E5676_scaffold546G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 1.19e-52
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MTCDRIHCNEDSQVPLPLDQWAIWC-WWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQC 60
          MT DR HCNEDSQ PLPLDQWAIWC WWSTGSL SWCCSFSLDHIGIVFLIE  NCLH+C
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60

Query: 61 LPDLASTDSASLESSFRYCIISAGLKFNNEL 90
          LPDLASTDSA LESSFRY I+SAGLKFNNEL
Sbjct: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNEL 91

[Close]

BLAST of CsGy2G005035 vs. ExPASy TrEMBL
Match: A0A0A0LH07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034710 PE=4 SV=1)

HSP 1 Score: 273 bits (699), Expect = 2.46e-93
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60
           MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL
Sbjct: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60

Query: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120
           PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE
Sbjct: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120

[Close]

BLAST of CsGy2G005035 vs. ExPASy TrEMBL
Match: A0A5A7TX74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001910 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 8.34e-55
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60
          MT DR HCNEDSQ PLPLDQWAIWCWWSTGSL SWCCSFSLDHIGIVFLIE  NCLH+CL
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHECL 60

Query: 61 PDLASTDSASLESSFRYCIISAGLKFNNEL 90
          PDLASTDSA LESSFRY I+SAGLKFNNEL
Sbjct: 61 PDLASTDSAGLESSFRYWIVSAGLKFNNEL 90

[Close]

BLAST of CsGy2G005035 vs. ExPASy TrEMBL
Match: A0A5D3B998 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00740 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 5.76e-53
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MTCDRIHCNEDSQVPLPLDQWAIWC-WWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQC 60
          MT DR HCNEDSQ PLPLDQWAIWC WWSTGSL SWCCSFSLDHIGIVFLIE  NCLH+C
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60

Query: 61 LPDLASTDSASLESSFRYCIISAGLKFNNEL 90
          LPDLASTDSA LESSFRY I+SAGLKFNNEL
Sbjct: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNEL 91

The following BLAST results are available for this feature:

BLAST of CsGy2G005035 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G005035 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61018.1	5.09e-93	100.00	hypothetical protein Csa_021204 [Cucumis sativus]	[more]
KAA0048112.1	1.72e-54	88.89	hypothetical protein E6C27_scaffold385G001910 [Cucumis melo var. makuwa]	[more]
TYJ96440.1	1.19e-52	87.91	hypothetical protein E5676_scaffold546G00740 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy2G005035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH07	2.46e-93	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034710 PE=4 SV=1	[more]
A0A5A7TX74	8.34e-55	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B998	5.76e-53	87.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy2G005035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G005035.1	CsGy2G005035.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane