Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTGATATTCCAGATTGGTTCAGTTACAAGAGTAGAAACAATCACATAACGATTTTTATGCCATCCAATGATCCAAGTTGGGAAATGAAGGTTTTTGCTCCTTGTGTCAAATTCCAAGTTAATCATGTTGACCGGAATCGTTATATGGATCTTGAATGTAAAATGTTCATAAACGACATTCAAGTATGGAGTTCTGAAGAAGTACCCTGTCTTGAAGAATCGAGAAGGATATTGATAGAAGAATCACCATATGAGTATATGTGGTTATTAGTACTATATCCTCATATAGATTTCCCACTAAATTCGGAAGATATTGTCAAGAGATCACAGGAGTACTTTAATCTACATCAGCCAAGTTTTGGGATCAATTCCATGGGAAGGGACAATAATAATTGTAATGTAGATGATGATCGGAGGAATCATTTTGGGGAGAGTATTTGGAGGAAATTTACGGTGTCATTTGGTGTCAATTCCAAATTTAAAGACTCCCAAGTAAGTATAAAAAGGTGTGGTGTTCATGTCATCATGGAGGAATGGCGAGACTGA
mRNA sequence
ATGAATTGTGATATTCCAGATTGGTTCAGTTACAAGAGTAGAAACAATCACATAACGATTTTTATGCCATCCAATGATCCAAGTTGGGAAATGAAGGTTTTTGCTCCTTGTGTCAAATTCCAAGTTAATCATGTTGACCGGAATCGTTATATGGATCTTGAATGTAAAATGTTCATAAACGACATTCAAGTATGGAGTTCTGAAGAAGTACCCTGTCTTGAAGAATCGAGAAGGATATTGATAGAAGAATCACCATATGAGTATATGTGGTTATTAGTACTATATCCTCATATAGATTTCCCACTAAATTCGGAAGATATTGTCAAGAGATCACAGGAGTACTTTAATCTACATCAGCCAAGTTTTGGGATCAATTCCATGGGAAGGGACAATAATAATTGTAATGTAGATGATGATCGGAGGAATCATTTTGGGGAGAGTATTTGGAGGAAATTTACGGTGTCATTTGGTGTCAATTCCAAATTTAAAGACTCCCAAGTAAGTATAAAAAGGTGTGGTGTTCATGTCATCATGGAGGAATGGCGAGACTGA
Coding sequence (CDS)
ATGAATTGTGATATTCCAGATTGGTTCAGTTACAAGAGTAGAAACAATCACATAACGATTTTTATGCCATCCAATGATCCAAGTTGGGAAATGAAGGTTTTTGCTCCTTGTGTCAAATTCCAAGTTAATCATGTTGACCGGAATCGTTATATGGATCTTGAATGTAAAATGTTCATAAACGACATTCAAGTATGGAGTTCTGAAGAAGTACCCTGTCTTGAAGAATCGAGAAGGATATTGATAGAAGAATCACCATATGAGTATATGTGGTTATTAGTACTATATCCTCATATAGATTTCCCACTAAATTCGGAAGATATTGTCAAGAGATCACAGGAGTACTTTAATCTACATCAGCCAAGTTTTGGGATCAATTCCATGGGAAGGGACAATAATAATTGTAATGTAGATGATGATCGGAGGAATCATTTTGGGGAGAGTATTTGGAGGAAATTTACGGTGTCATTTGGTGTCAATTCCAAATTTAAAGACTCCCAAGTAAGTATAAAAAGGTGTGGTGTTCATGTCATCATGGAGGAATGGCGAGACTGA
Protein sequence
MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFINDIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQPSFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEEWRD*
Homology
BLAST of CsGy2G003805 vs. NCBI nr
Match:
XP_031737216.1 (TMV resistance protein N isoform X3 [Cucumis sativus])
HSP 1 Score: 396 bits (1017), Expect = 6.82e-132
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN
Sbjct: 541 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 600
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP
Sbjct: 601 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 660
Query: 121 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 180
SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE
Sbjct: 661 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 720
Query: 181 WRD 183
WRD
Sbjct: 721 WRD 723
BLAST of CsGy2G003805 vs. NCBI nr
Match:
XP_011648801.1 (TMV resistance protein N isoform X2 [Cucumis sativus])
HSP 1 Score: 396 bits (1017), Expect = 8.29e-131
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN
Sbjct: 636 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 695
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP
Sbjct: 696 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 755
Query: 121 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 180
SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE
Sbjct: 756 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 815
Query: 181 WRD 183
WRD
Sbjct: 816 WRD 818
BLAST of CsGy2G003805 vs. NCBI nr
Match:
KGN60910.2 (hypothetical protein Csa_023447 [Cucumis sativus])
HSP 1 Score: 360 bits (923), Expect = 2.02e-122
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN
Sbjct: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP
Sbjct: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
Query: 121 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQ 166
SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQ
Sbjct: 121 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQ 166
BLAST of CsGy2G003805 vs. NCBI nr
Match:
XP_008465653.2 (PREDICTED: TMV resistance protein N-like [Cucumis melo])
HSP 1 Score: 355 bits (911), Expect = 7.00e-119
Identity = 169/184 (91.85%), Postives = 174/184 (94.57%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNN ITIFMPSNDP WE+KVFAPCVKFQVNHVDRNRYMDLECKMFIN
Sbjct: 305 MNCDIPDWFSYKSRNNPITIFMPSNDPCWELKVFAPCVKFQVNHVDRNRYMDLECKMFIN 364
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWSSEEVP LEESRRILIE SPYEYMWLLVLYPHIDFPLNS+DI+KRSQE NLHQP
Sbjct: 365 DIQVWSSEEVPFLEESRRILIEASPYEYMWLLVLYPHIDFPLNSDDIIKRSQE-INLHQP 424
Query: 121 SFGI-NSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIME 180
SFGI NSMGRDNNNCNVDDDRRNHFGES W KFTVSFGVNSK+KDS+VSIKRCGVHVIME
Sbjct: 425 SFGISNSMGRDNNNCNVDDDRRNHFGESTWSKFTVSFGVNSKYKDSEVSIKRCGVHVIME 484
Query: 181 EWRD 183
E RD
Sbjct: 485 ECRD 487
BLAST of CsGy2G003805 vs. NCBI nr
Match:
XP_008455000.2 (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])
HSP 1 Score: 316 bits (809), Expect = 1.65e-98
Identity = 150/184 (81.52%), Postives = 166/184 (90.22%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNN IT+ +PSNDPS E+KVFA CVKFQVNHVD+++YMDLECK+FIN
Sbjct: 803 MNCDIPDWFSYKSRNNPITLLVPSNDPSSELKVFAACVKFQVNHVDQDQYMDLECKVFIN 862
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWS EEVP +ESR ILI+ SP+EYMWLLVLYPHI+F LNS+DI+ RSQE NLHQP
Sbjct: 863 DIQVWSYEEVPFHDESRSILIKASPHEYMWLLVLYPHINFRLNSDDIINRSQE-INLHQP 922
Query: 121 SFGINSMGRDNNNCNVDDD-RRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIME 180
SFGINS+GRDNNNCNVDDD RRNH GESIWRKFTVSFGV SKFKDS++SIK CGVHVIME
Sbjct: 923 SFGINSIGRDNNNCNVDDDYRRNHIGESIWRKFTVSFGVTSKFKDSELSIKTCGVHVIME 982
Query: 181 EWRD 183
EW D
Sbjct: 983 EWCD 985
BLAST of CsGy2G003805 vs. ExPASy TrEMBL
Match:
A0A0A0LFP7 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021510 PE=4 SV=1)
HSP 1 Score: 396 bits (1017), Expect = 8.64e-129
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN
Sbjct: 872 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 931
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP
Sbjct: 932 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 991
Query: 121 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 180
SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE
Sbjct: 992 SFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 1051
Query: 181 WRD 183
WRD
Sbjct: 1052 WRD 1054
BLAST of CsGy2G003805 vs. ExPASy TrEMBL
Match:
A0A1S3CPD4 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503294 PE=4 SV=1)
HSP 1 Score: 355 bits (911), Expect = 3.39e-119
Identity = 169/184 (91.85%), Postives = 174/184 (94.57%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNN ITIFMPSNDP WE+KVFAPCVKFQVNHVDRNRYMDLECKMFIN
Sbjct: 305 MNCDIPDWFSYKSRNNPITIFMPSNDPCWELKVFAPCVKFQVNHVDRNRYMDLECKMFIN 364
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWSSEEVP LEESRRILIE SPYEYMWLLVLYPHIDFPLNS+DI+KRSQE NLHQP
Sbjct: 365 DIQVWSSEEVPFLEESRRILIEASPYEYMWLLVLYPHIDFPLNSDDIIKRSQE-INLHQP 424
Query: 121 SFGI-NSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIME 180
SFGI NSMGRDNNNCNVDDDRRNHFGES W KFTVSFGVNSK+KDS+VSIKRCGVHVIME
Sbjct: 425 SFGISNSMGRDNNNCNVDDDRRNHFGESTWSKFTVSFGVNSKYKDSEVSIKRCGVHVIME 484
Query: 181 EWRD 183
E RD
Sbjct: 485 ECRD 487
BLAST of CsGy2G003805 vs. ExPASy TrEMBL
Match:
A0A1S3C131 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495278 PE=4 SV=1)
HSP 1 Score: 316 bits (809), Expect = 7.99e-99
Identity = 150/184 (81.52%), Postives = 166/184 (90.22%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNN IT+ +PSNDPS E+KVFA CVKFQVNHVD+++YMDLECK+FIN
Sbjct: 803 MNCDIPDWFSYKSRNNPITLLVPSNDPSSELKVFAACVKFQVNHVDQDQYMDLECKVFIN 862
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWS EEVP +ESR ILI+ SP+EYMWLLVLYPHI+F LNS+DI+ RSQE NLHQP
Sbjct: 863 DIQVWSYEEVPFHDESRSILIKASPHEYMWLLVLYPHINFRLNSDDIINRSQE-INLHQP 922
Query: 121 SFGINSMGRDNNNCNVDDD-RRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIME 180
SFGINS+GRDNNNCNVDDD RRNH GESIWRKFTVSFGV SKFKDS++SIK CGVHVIME
Sbjct: 923 SFGINSIGRDNNNCNVDDDYRRNHIGESIWRKFTVSFGVTSKFKDSELSIKTCGVHVIME 982
Query: 181 EWRD 183
EW D
Sbjct: 983 EWCD 985
BLAST of CsGy2G003805 vs. ExPASy TrEMBL
Match:
A0A1S4DZW3 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495278 PE=4 SV=1)
HSP 1 Score: 316 bits (809), Expect = 3.72e-98
Identity = 150/184 (81.52%), Postives = 166/184 (90.22%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNHVDRNRYMDLECKMFIN 60
MNCDIPDWFSYKSRNN IT+ +PSNDPS E+KVFA CVKFQVNHVD+++YMDLECK+FIN
Sbjct: 906 MNCDIPDWFSYKSRNNPITLLVPSNDPSSELKVFAACVKFQVNHVDQDQYMDLECKVFIN 965
Query: 61 DIQVWSSEEVPCLEESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFNLHQP 120
DIQVWS EEVP +ESR ILI+ SP+EYMWLLVLYPHI+F LNS+DI+ RSQE NLHQP
Sbjct: 966 DIQVWSYEEVPFHDESRSILIKASPHEYMWLLVLYPHINFRLNSDDIINRSQE-INLHQP 1025
Query: 121 SFGINSMGRDNNNCNVDDD-RRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHVIME 180
SFGINS+GRDNNNCNVDDD RRNH GESIWRKFTVSFGV SKFKDS++SIK CGVHVIME
Sbjct: 1026 SFGINSIGRDNNNCNVDDDYRRNHIGESIWRKFTVSFGVTSKFKDSELSIKTCGVHVIME 1085
Query: 181 EWRD 183
EW D
Sbjct: 1086 EWCD 1088
BLAST of CsGy2G003805 vs. ExPASy TrEMBL
Match:
A0A1S3BZE0 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495261 PE=4 SV=1)
HSP 1 Score: 172 bits (437), Expect = 2.12e-46
Identity = 95/184 (51.63%), Postives = 119/184 (64.67%), Query Frame = 0
Query: 1 MNCDIPDWFSYKSRNNHITIFMPSNDPSWEMKVFAPCVKFQVNH--VDRNRYMDLECKMF 60
MNCDIP+WF YKSRNN IT N P W +KV A CVK QV+ + +LEC++F
Sbjct: 749 MNCDIPEWFDYKSRNNSITFPTTFNYPGWRLKVLAACVKVQVHDCVTQYHNTAELECQVF 808
Query: 61 INDIQVWSSE-EVPCL-EESRRILIEESPYEYMWLLVLYPHIDFPLNSEDIVKRSQEYFN 120
NDI VWSSE E CL EESR + +E SP +Y W +VL PH DF L+ +D+++ S E +
Sbjct: 809 FNDIPVWSSEDEEKCLVEESRWLSLEASPNDYTWFIVLNPHRDFYLDLDDMMEGSPET-D 868
Query: 121 LHQPSFGINSMGRDNNNCNVDDDRRNHFGESIWRKFTVSFGVNSKFKDSQVSIKRCGVHV 180
+ Q FGINSM D+N + DD N G SIW+ FTV F + D++VSIK CGVHV
Sbjct: 869 VSQLCFGINSMEMDHNI--IPDDNWNSIGGSIWKNFTVLFTPRPELSDAKVSIKSCGVHV 928
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_031737216.1 | 6.82e-132 | 100.00 | TMV resistance protein N isoform X3 [Cucumis sativus] | [more] |
XP_011648801.1 | 8.29e-131 | 100.00 | TMV resistance protein N isoform X2 [Cucumis sativus] | [more] |
KGN60910.2 | 2.02e-122 | 100.00 | hypothetical protein Csa_023447 [Cucumis sativus] | [more] |
XP_008465653.2 | 7.00e-119 | 91.85 | PREDICTED: TMV resistance protein N-like [Cucumis melo] | [more] |
XP_008455000.2 | 1.65e-98 | 81.52 | PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LFP7 | 8.64e-129 | 100.00 | TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021510 PE=4 SV... | [more] |
A0A1S3CPD4 | 3.39e-119 | 91.85 | TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503294 PE=4 SV=1 | [more] |
A0A1S3C131 | 7.99e-99 | 81.52 | TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495278... | [more] |
A0A1S4DZW3 | 3.72e-98 | 81.52 | TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495278... | [more] |
A0A1S3BZE0 | 2.12e-46 | 51.63 | TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495261... | [more] |
Match Name | E-value | Identity | Description | |