CsGy2G003670 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G003670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	TMV resistance protein N-like
Location	Gy14Chr2: 2492006 .. 2492693 (+)
RNA-Seq Expression	CsGy2G003670
Synteny	CsGy2G003670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTGTATCATTTCTTTCTCATGACCTCATCTCTCATGTATTTCGTTTATATAAGAATTAAGTTTACTCTTATTTTGCAGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTGTGTCTAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

mRNA sequence

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Coding sequence (CDS)

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Protein sequence

MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE*

Homology

[Close]

BLAST of CsGy2G003670 vs. NCBI nr
Match: KGN60865.1 (hypothetical protein Csa_023466 [Cucumis sativus])

HSP 1 Score: 288 bits (738), Expect = 1.52e-98
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60

Query: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120
           NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE
Sbjct: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120

Query: 121 VSIKMYGVHVIMEE 134
           VSIKMYGVHVIMEE
Sbjct: 121 VSIKMYGVHVIMEE 134

[Close]

BLAST of CsGy2G003670 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 121 bits (303), Expect = 8.79e-29
Identity = 85/209 (40.67%), Postives = 98/209 (46.89%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKS-FGEFKQLILMN 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+   E E +  G FK L+LMN
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 63  YDIPDWCR-------------------------------------------------FEV 122
            DIPDWC+                                                 FEV
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVTAYPFHLAYRVFINDFEV 895

Query: 123 ISS--------GEYLWMPVVD------------------IKSSRDILDRVTVLFDVRVPK 134
             S        GEYLWM V+D                  I SSR ILD++TVLF+V  P+
Sbjct: 896 RKSFWMDDRSRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKITVLFEVITPE 955

[Close]

BLAST of CsGy2G003670 vs. NCBI nr
Match: XP_011649005.1 (TMV resistance protein N isoform X1 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 1.90e-22
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+E +K     KQLILMN 
Sbjct: 858 ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSGEYLWMPVVDIKS 88
           DIPDW  ++ +++      P++D  S
Sbjct: 918 DIPDWFSYKSMNNSVTFLFPLIDYLS 943

[Close]

BLAST of CsGy2G003670 vs. NCBI nr
Match: XP_016901554.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 2.27e-21
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 2   RDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEK-SFGEFKQLILM 61
           RDC LLEEIPKVP+G V M+A GC+LL RFPD I DFISC  N  +EK  +   K+LILM
Sbjct: 856 RDCKLLEEIPKVPKGAVTMNASGCILLARFPDNILDFISCYDNYMEEKHEYKVIKELILM 915

Query: 62  NYDIPDWCRFEVISSG 76
           N DIPDWC+++  ++ 
Sbjct: 916 NCDIPDWCQYKSTNNS 931

[Close]

BLAST of CsGy2G003670 vs. NCBI nr
Match: KAE8651666.1 (hypothetical protein Csa_021160 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.09e-21
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C  LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN 
Sbjct: 858 ECKSLEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSG 76
           DIPDWC+++ ++  
Sbjct: 918 DIPDWCKYKSMNDS 931

[Close]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL
Match: A0A0A0LFN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1)

HSP 1 Score: 288 bits (738), Expect = 7.34e-99
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60

Query: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120
           NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE
Sbjct: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120

Query: 121 VSIKMYGVHVIMEE 134
           VSIKMYGVHVIMEE
Sbjct: 121 VSIKMYGVHVIMEE 134

[Close]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL
Match: A0A1S4DZR7 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 4.26e-29
Identity = 85/209 (40.67%), Postives = 98/209 (46.89%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKS-FGEFKQLILMN 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+   E E +  G FK L+LMN
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 63  YDIPDWCR-------------------------------------------------FEV 122
            DIPDWC+                                                 FEV
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVTAYPFHLAYRVFINDFEV 895

Query: 123 ISS--------GEYLWMPVVD------------------IKSSRDILDRVTVLFDVRVPK 134
             S        GEYLWM V+D                  I SSR ILD++TVLF+V  P+
Sbjct: 896 RKSFWMDDRSRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKITVLFEVITPE 955

[Close]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL
Match: A0A0A0LJK8 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 9.19e-23
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+E +K     KQLILMN 
Sbjct: 858 ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSGEYLWMPVVDIKS 88
           DIPDW  ++ +++      P++D  S
Sbjct: 918 DIPDWFSYKSMNNSVTFLFPLIDYLS 943

[Close]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL
Match: A0A1S4E019 (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495230 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.10e-21
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 2   RDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEK-SFGEFKQLILM 61
           RDC LLEEIPKVP+G V M+A GC+LL RFPD I DFISC  N  +EK  +   K+LILM
Sbjct: 856 RDCKLLEEIPKVPKGAVTMNASGCILLARFPDNILDFISCYDNYMEEKHEYKVIKELILM 915

Query: 62  NYDIPDWCRFEVISSG 76
           N DIPDWC+++  ++ 
Sbjct: 916 NCDIPDWCQYKSTNNS 931

[Close]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL
Match: A0A0A0LJ96 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.79e-20
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 7   LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPD 66
           LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN DIPD
Sbjct: 825 LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67  WCRFEVISSG 76
           WC+++ ++  
Sbjct: 885 WCKYKSMNDS 894

The following BLAST results are available for this feature:

BLAST of CsGy2G003670 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G003670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60865.1	1.52e-98	100.00	hypothetical protein Csa_023466 [Cucumis sativus]	[more]
XP_016901487.1	8.79e-29	40.67	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
XP_011649005.1	1.90e-22	54.65	TMV resistance protein N isoform X1 [Cucumis sativus]	[more]
XP_016901554.1	2.27e-21	59.21	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
KAE8651666.1	3.09e-21	59.46	hypothetical protein Csa_021160 [Cucumis sativus]	[more]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFN6	7.34e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1	[more]
A0A1S4DZR7	4.26e-29	40.67	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1	[more]
A0A0A0LJK8	9.19e-23	54.65	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV...	[more]
A0A1S4E019	1.10e-21	59.21	LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0LJ96	1.79e-20	61.43	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV...	[more]

BLAST of CsGy2G003670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G003670.2	CsGy2G003670.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050896	response to stimulus