CsGy1G028670 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G028670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protochlorophyllide-dependent translocon component 52, chloroplastic-like
Location	Gy14Chr1: 26783518 .. 26785558 (+)
RNA-Seq Expression	CsGy1G028670
Synteny	CsGy1G028670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCATTCACAGCAACTGCTGACAGGGAAGGTGGCAGACCACTTGAATTGGTTGTTGAAAAGTTGAAAGCAGATGGATTTGTTGGCAGACACGAAAGGCTCCGTCACAAGTTTTTTGCACCTTGTGTCTATTATTTTTTCACTGATCCAGAGTTGGTTCAAGGAAATGTAGAGAGCTCCACCAAGAACGATGAAGCCGTATCATCAACTGCAAATGTAAAGGTACATTAGATTAGACAACGGCATAACTGCATTTACATGTTTCTTCTTGCATTGAGTCAATAATTGTTAGATCATCCATCAAATTAAAAAATTAAGCATACGTCCCAAAAGCCTAATTTGTATTCGAATTTATGTTATTTGAGATCTTGGTCCTAAGGTTTAGTGGAGTGCGCTATGTAAATTTTATAACTATACCGTCTTTGAATTTGTAATACGATAATTCCTATCCAATAATAAATTGTTTTTTTTCTAATATGAACACAGCCAACACACTGTTAGTGAACCACGTAAATTTCTGTGACGATTTTCCTGCCCAATATGTTTTTCTTGCCTTCTTTGGTCGTCGATTTCATAACAAACATTCCCTTCATATGTGAGCTTGAAATTTCGTAGAGGTTCAAATTTCGGATCTCGTAGTTATAGTAAATCTCATTTTATCAATACTTCAACTGTAACTCAAACTTAAACATCTGAACTGCATTTTCTTTTGCTTTTCGCTAGTGATTTGGTTTGCTTCATGAAAAGTTTTGTTGGTTCAGAAACCGCCAACAGAAATCTCGCAGCGAAGATCATTTCTGGTTTTCTTCTGCATCCCAGTTAGTCCAGGCAAAAGCAGATTGATATGGGCCTTCCCTAGGAACTTTGGGAAATGGATGAACTATATTGTCCCACGATGGATGTTTCACATAGGGCAGAACTTGATTCTAGATTCAGACATGTATTTTCTTCGTGTTGAGGCAAGACAGTTGATTTGTGGATATTTTATTTGCCTGTCGAATATAGTTTCTGATGAAGTTTGTTCTGAATTTTAGGAGCATAAATATGAGGAAATAGGCCCTTCAAATTGGCATAAAGCTTGTTATGTGCCAGTAAAATCAGATGCTTTGGTTGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCGAGTTGATTGGGGAGGCAAATATTCTGGCTCTCTTCCTCCAATCCCTCCTAGAGAACAGGTGTTCGAAAGGTATCCTCTAATTTCTGAAACTCAACTTCCTCCACTCTCTCATTGCCGACTAGTTTTGAAAAGAACTCCATGTTATCTAATATAATTAGTTTTGAAAAAGAACTCCATGTTATCTAATATGGAATCAAAGTTCATAAAGCCTACTTAAGCATTTGGTTCATAAAGATTTGATTCAAGAATCGGAAACCCAAGAAGGACCATCTTGAGGAGGCATTTTGGAACTTTAGTTCGAATTTGTTAGGACAGCAAACCTTTCACATTTATTTTAACCCACAAACTATAATAACTAATTTATTGCCCTAAACAACCCCTGTTTTGTTTAGTTTAGGTATGATGTTCAATAATTGAGCTTATTTTTTTACAATTTCTTAATTATTTTTTCATCTTTTCCTAAGTAAACACCAGACTTCTTGGCCAAATCATAGAAACAAAAACAAACTTTAATGTAAAAAAAAAATGTGACGACTTAAACTTAACCTCAAAAACCAAAAATCAAATGATTATCTACCTTTACCAAAGGTATTAGGTTTGTCGTTCCATAATTGGTTATTGAATTTCAGGTACTGGAGCCATGTGGTGAATTGCAAGAGCTGCAATGGTGCATACAAAGCTCTAAACATAGCTGAGGTGAGTCTTCAGGCCATCTCCATGGCTGCAATTGGAGCTTTGGCATTGATAAAGCATGGTGTACTTTCAGCAACAGTTAGAGCCACCATTGTCACCGTTGCAATACTCTGTTTTGCTGCTTCAAAGTGGTTATCCCATTTCATCCACAAAACTTTCCACTTCCAAGTTTACAATCATGCCCTGGTTTGA

mRNA sequence

ATGTGTTCATTCACAGCAACTGCTGACAGGGAAGGTGGCAGACCACTTGAATTGGTTGTTGAAAAGTTGAAAGCAGATGGATTTGTTGGCAGACACGAAAGGCTCCGTCACAAGTTTTTTGCACCTTGTGTCTATTATTTTTTCACTGATCCAGAGTTGGTTCAAGGAAATGTAGAGAGCTCCACCAAGAACGATGAAGCCGTATCATCAACTGCAAATGTAAAGAAACCGCCAACAGAAATCTCGCAGCGAAGATCATTTCTGGTTTTCTTCTGCATCCCAGTTAGTCCAGGCAAAAGCAGATTGATATGGGCCTTCCCTAGGAACTTTGGGAAATGGATGAACTATATTGTCCCACGATGGATGTTTCACATAGGGCAGAACTTGATTCTAGATTCAGACATGTATTTTCTTCGTGTTGAGGAGCATAAATATGAGGAAATAGGCCCTTCAAATTGGCATAAAGCTTGTTATGTGCCAGTAAAATCAGATGCTTTGGTTGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCGAGTTGATTGGGGAGGCAAATATTCTGGCTCTCTTCCTCCAATCCCTCCTAGAGAACAGGTGTTCGAAAGGTACTGGAGCCATGTGGTGAATTGCAAGAGCTGCAATGGTGCATACAAAGCTCTAAACATAGCTGAGGTGAGTCTTCAGGCCATCTCCATGGCTGCAATTGGAGCTTTGGCATTGATAAAGCATGGTGTACTTTCAGCAACAGTTAGAGCCACCATTGTCACCGTTGCAATACTCTGTTTTGCTGCTTCAAAGTGGTTATCCCATTTCATCCACAAAACTTTCCACTTCCAAGTTTACAATCATGCCCTGGTTTGA

Coding sequence (CDS)

ATGTGTTCATTCACAGCAACTGCTGACAGGGAAGGTGGCAGACCACTTGAATTGGTTGTTGAAAAGTTGAAAGCAGATGGATTTGTTGGCAGACACGAAAGGCTCCGTCACAAGTTTTTTGCACCTTGTGTCTATTATTTTTTCACTGATCCAGAGTTGGTTCAAGGAAATGTAGAGAGCTCCACCAAGAACGATGAAGCCGTATCATCAACTGCAAATGTAAAGAAACCGCCAACAGAAATCTCGCAGCGAAGATCATTTCTGGTTTTCTTCTGCATCCCAGTTAGTCCAGGCAAAAGCAGATTGATATGGGCCTTCCCTAGGAACTTTGGGAAATGGATGAACTATATTGTCCCACGATGGATGTTTCACATAGGGCAGAACTTGATTCTAGATTCAGACATGTATTTTCTTCGTGTTGAGGAGCATAAATATGAGGAAATAGGCCCTTCAAATTGGCATAAAGCTTGTTATGTGCCAGTAAAATCAGATGCTTTGGTTGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCGAGTTGATTGGGGAGGCAAATATTCTGGCTCTCTTCCTCCAATCCCTCCTAGAGAACAGGTGTTCGAAAGGTACTGGAGCCATGTGGTGAATTGCAAGAGCTGCAATGGTGCATACAAAGCTCTAAACATAGCTGAGGTGAGTCTTCAGGCCATCTCCATGGCTGCAATTGGAGCTTTGGCATTGATAAAGCATGGTGTACTTTCAGCAACAGTTAGAGCCACCATTGTCACCGTTGCAATACTCTGTTTTGCTGCTTCAAAGTGGTTATCCCATTTCATCCACAAAACTTTCCACTTCCAAGTTTACAATCATGCCCTGGTTTGA

Protein sequence

MCSFTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV*

Homology

[Close]

BLAST of CsGy1G028670 vs. ExPASy Swiss-Prot
Match: Q8W496 (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.6e-83
Identity = 155/281 (55.16%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 9   DREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAV 68
           DREGG+PLE+ V+KL   GF  + E     F APCVY   TDP           +  E  
Sbjct: 290 DREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDP--------LPEQEHEYP 349

Query: 69  SSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQN 128
           +  A+ K     +S+RR  L+F CIPVSPG+SRLIW FPRNFG +++ IVPRW+FHIGQN
Sbjct: 350 APAASDK---AALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQN 409

Query: 129 LILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKY 188
            ILDSD++ L VEE K  E GP NW KAC++P KSDA VV FRRW NKY+  RVDW GK+
Sbjct: 410 TILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKF 469

Query: 189 SG-SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGV 248
               LPP PPREQ+F+RYWSHV NC SC  A+K LN  EV LQ  S+A IG +A++K   
Sbjct: 470 DPFLLPPTPPREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTT 529

Query: 249 LSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 289
           +S   R  ++  A+L FAASKWLSHFI+KTFH+  YNHA+V
Sbjct: 530 MSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAVV 559

[Close]

BLAST of CsGy1G028670 vs. ExPASy Swiss-Prot
Match: O49931 (Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10
Identity = 72/276 (26.09%), Postives = 106/276 (38.41%), Query Frame = 0


Query: 7   TADREGGRPLELVVEKLKADGFVGRHERLRH-------KFFAPCVYYFFTDPELVQGNVE 66
           +A RE  + L   V +    GF G   R +        +F APCV         +Q N E
Sbjct: 268 SAKREDAQALGFEVTERTDRGFAGWWGREKDGSKPNFLRFEAPCV---------LQNNRE 327

Query: 67  SSTKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVP 126
              KN E    +                 +F C P   GKS LI  F       +  + P
Sbjct: 328 IVDKNGEINHFSG----------------LFLCRPTGQGKSMLIVRFGATKRSPLIKLFP 387

Query: 127 RWMFHIGQNLILDSDMYFLRVE-EHKYEEIGPSNWHKACYVPVK-SDALVVGFRRWLNKY 186
            W FH   + + + DM FL  + E   +E  P+   K  Y+ +K SD  V  +R+W++K 
Sbjct: 388 EWYFHQNASKVFEQDMGFLSSQNEILLKEKVPT---KELYLNLKSSDTWVAEYRKWMDKV 447

Query: 187 AGGRVDWGGKYSGSLPPIPP---------------------------REQVFERYWSHVV 246
             G     G  + SLP  P                               +  RY+ HV+
Sbjct: 448 GHGMPYHFGHSTISLPEEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVI 507

[Close]

BLAST of CsGy1G028670 vs. NCBI nr
Match: KAE8653477.1 (hypothetical protein Csa_007080 [Cucumis sativus])

HSP 1 Score: 598 bits (1541), Expect = 7.28e-216
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVES 60
           MCSFTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVES
Sbjct: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVES 60

Query: 61  STKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120
           STKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPR
Sbjct: 61  STKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120

Query: 121 WMFHIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180
           WMFHIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG
Sbjct: 121 WMFHIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180

Query: 181 RVDWGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGAL 240
           RVDWGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGAL
Sbjct: 181 RVDWGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGAL 240

Query: 241 ALIKHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           ALIKHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV
Sbjct: 241 ALIKHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288

[Close]

BLAST of CsGy1G028670 vs. NCBI nr
Match: XP_011660064.1 (protochlorophyllide-dependent translocon component 52, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 586 bits (1511), Expect = 1.41e-206
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 6   ATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKND 65
           ATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKND
Sbjct: 308 ATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKND 367

Query: 66  EAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHI 125
           EAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHI
Sbjct: 368 EAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHI 427

Query: 126 GQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWG 185
           GQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWG
Sbjct: 428 GQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWG 487

Query: 186 GKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKH 245
           GKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKH
Sbjct: 488 GKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKH 547

Query: 246 GVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           GVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV
Sbjct: 548 GVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 590

[Close]

BLAST of CsGy1G028670 vs. NCBI nr
Match: KAA0055704.1 (protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa])

HSP 1 Score: 572 bits (1475), Expect = 8.41e-206
Identity = 274/288 (95.14%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVES 60
           MCSFTATADREGGRPLELVVEKLKADGFVGRHER+RHKFFAPCVYYFF+DPELVQGNVES
Sbjct: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYFFSDPELVQGNVES 60

Query: 61  STKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120
           S+KNDEAVSSTANVKKPPTEISQRRSFLVF+CIPVSPGKSRLIWAFPRNFGKWMNYIVPR
Sbjct: 61  SSKNDEAVSSTANVKKPPTEISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120

Query: 121 WMFHIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180
           WMFHIGQNLILDSDMYFLRVEEHK EEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG
Sbjct: 121 WMFHIGQNLILDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180

Query: 181 RVDWGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGAL 240
           RVDWGGKYSGSLPP+PPRE+VFERY SHVVNCKSCNGAYKALNIAEVSLQAIS+AAIGAL
Sbjct: 181 RVDWGGKYSGSLPPLPPREEVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGAL 240

Query: 241 ALIKHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           AL K+GV+SATVRATIVT+AILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 241 ALTKNGVISATVRATIVTIAILCFAASKWLSHFIHKTFHFQDYNHALV 288

[Close]

BLAST of CsGy1G028670 vs. NCBI nr
Match: TYK09957.1 (protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa])

HSP 1 Score: 562 bits (1449), Expect = 2.93e-191
Identity = 269/285 (94.39%), Postives = 280/285 (98.25%), Query Frame = 0


Query: 4    FTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTK 63
            +T TADREGGRPLELVVEKLKADGFVGRHER+RHKFFAPCVYYFF+DPELVQGNVESS+K
Sbjct: 748  YTPTADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYFFSDPELVQGNVESSSK 807

Query: 64   NDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMF 123
            NDEAVSSTANVKKPPTEISQRRSFLVF+CIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMF
Sbjct: 808  NDEAVSSTANVKKPPTEISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMF 867

Query: 124  HIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVD 183
            HIGQNLILDSDMYFLRVEEHK EEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVD
Sbjct: 868  HIGQNLILDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVD 927

Query: 184  WGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALI 243
            WGGKYSGSLPP+PPRE+VFERY SHVVNCKSCNGAYKALNIAEVSLQAIS+AAIGALAL 
Sbjct: 928  WGGKYSGSLPPLPPREEVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGALALT 987

Query: 244  KHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
            K+GV+SATVRATIVT+AILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 988  KNGVISATVRATIVTIAILCFAASKWLSHFIHKTFHFQDYNHALV 1032

[Close]

BLAST of CsGy1G028670 vs. NCBI nr
Match: XP_038880155.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 540 bits (1392), Expect = 4.44e-189
Identity = 257/281 (91.46%), Postives = 269/281 (95.73%), Query Frame = 0


Query: 8   ADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEA 67
           ADREGGRPLEL+VEKLKADGFVG+ ERLRHKFFAPCVYYFF DPELVQ NVESS+KNDE+
Sbjct: 271 ADREGGRPLELIVEKLKADGFVGKQERLRHKFFAPCVYYFFLDPELVQENVESSSKNDES 330

Query: 68  VSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQ 127
           VSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSR+IWAFPRNFGKW+NYIVPRW+FHIGQ
Sbjct: 331 VSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRIIWAFPRNFGKWVNYIVPRWIFHIGQ 390

Query: 128 NLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGK 187
           NLILDSDMYFLRVEEHK EEIG SNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGK
Sbjct: 391 NLILDSDMYFLRVEEHKLEEIGTSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGK 450

Query: 188 YSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGV 247
           YSGSLPP+PPREQVFERYWSHVVNCKSCNGAYKALNI EVSLQ IS+AAIGALAL K  V
Sbjct: 451 YSGSLPPLPPREQVFERYWSHVVNCKSCNGAYKALNIVEVSLQVISIAAIGALALTKQNV 510

Query: 248 LSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           +SA VRATIVT+A+LCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 511 ISAAVRATIVTIAMLCFAASKWLSHFIHKTFHFQDYNHALV 551

[Close]

BLAST of CsGy1G028670 vs. ExPASy TrEMBL
Match: A0A5A7UKJ8 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00860 PE=4 SV=1)

HSP 1 Score: 572 bits (1475), Expect = 4.07e-206
Identity = 274/288 (95.14%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVES 60
           MCSFTATADREGGRPLELVVEKLKADGFVGRHER+RHKFFAPCVYYFF+DPELVQGNVES
Sbjct: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYFFSDPELVQGNVES 60

Query: 61  STKNDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120
           S+KNDEAVSSTANVKKPPTEISQRRSFLVF+CIPVSPGKSRLIWAFPRNFGKWMNYIVPR
Sbjct: 61  SSKNDEAVSSTANVKKPPTEISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120

Query: 121 WMFHIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180
           WMFHIGQNLILDSDMYFLRVEEHK EEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG
Sbjct: 121 WMFHIGQNLILDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180

Query: 181 RVDWGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGAL 240
           RVDWGGKYSGSLPP+PPRE+VFERY SHVVNCKSCNGAYKALNIAEVSLQAIS+AAIGAL
Sbjct: 181 RVDWGGKYSGSLPPLPPREEVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGAL 240

Query: 241 ALIKHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           AL K+GV+SATVRATIVT+AILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 241 ALTKNGVISATVRATIVTIAILCFAASKWLSHFIHKTFHFQDYNHALV 288

[Close]

BLAST of CsGy1G028670 vs. ExPASy TrEMBL
Match: A0A0A0LX74 (Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600180 PE=4 SV=1)

HSP 1 Score: 577 bits (1487), Expect = 8.77e-204
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 11  EGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAVSS 70
           EGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAVSS
Sbjct: 277 EGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAVSS 336

Query: 71  TANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQNLI 130
           TANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQNLI
Sbjct: 337 TANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQNLI 396

Query: 131 LDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKYSG 190
           LDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKYSG
Sbjct: 397 LDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKYSG 456

Query: 191 SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGVLSA 250
           SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGVLSA
Sbjct: 457 SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGVLSA 516

Query: 251 TVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           TVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV
Sbjct: 517 TVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 554

[Close]

BLAST of CsGy1G028670 vs. ExPASy TrEMBL
Match: A0A5D3CD90 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00860 PE=4 SV=1)

HSP 1 Score: 562 bits (1449), Expect = 1.42e-191
Identity = 269/285 (94.39%), Postives = 280/285 (98.25%), Query Frame = 0


Query: 4    FTATADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTK 63
            +T TADREGGRPLELVVEKLKADGFVGRHER+RHKFFAPCVYYFF+DPELVQGNVESS+K
Sbjct: 748  YTPTADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYFFSDPELVQGNVESSSK 807

Query: 64   NDEAVSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMF 123
            NDEAVSSTANVKKPPTEISQRRSFLVF+CIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMF
Sbjct: 808  NDEAVSSTANVKKPPTEISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMF 867

Query: 124  HIGQNLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVD 183
            HIGQNLILDSDMYFLRVEEHK EEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVD
Sbjct: 868  HIGQNLILDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVD 927

Query: 184  WGGKYSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALI 243
            WGGKYSGSLPP+PPRE+VFERY SHVVNCKSCNGAYKALNIAEVSLQAIS+AAIGALAL 
Sbjct: 928  WGGKYSGSLPPLPPREEVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGALALT 987

Query: 244  KHGVLSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
            K+GV+SATVRATIVT+AILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 988  KNGVISATVRATIVTIAILCFAASKWLSHFIHKTFHFQDYNHALV 1032

[Close]

BLAST of CsGy1G028670 vs. ExPASy TrEMBL
Match: A0A1S4DYB5 (LOW QUALITY PROTEIN: protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492541 PE=4 SV=1)

HSP 1 Score: 508 bits (1309), Expect = 4.09e-177
Identity = 248/281 (88.26%), Postives = 258/281 (91.81%), Query Frame = 0


Query: 8   ADREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEA 67
           ADREGGRPLELVVEKLKADGFVGRHER+RHKFFAPCVYY F+DPELVQGNVESS      
Sbjct: 267 ADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYXFSDPELVQGNVESS------ 326

Query: 68  VSSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQ 127
                       +ISQRRSFLVF+CIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQ
Sbjct: 327 ------------KISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQ 386

Query: 128 NLILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGK 187
           NLILDSDMYFLRVEEHK EEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGK
Sbjct: 387 NLILDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGK 446

Query: 188 YSGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGV 247
           YSGSLPP+PPRE+VFERY SHVVNCKSCNGAYKALNIAEVSLQAIS+AAIGALAL K+GV
Sbjct: 447 YSGSLPPLPPREEVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGALALTKNGV 506

Query: 248 LSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
           +SATVRATIVT+AILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 507 ISATVRATIVTIAILCFAASKWLSHFIHKTFHFQDYNHALV 529

[Close]

BLAST of CsGy1G028670 vs. ExPASy TrEMBL
Match: A0A6J1HB02 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461739 PE=4 SV=1)

HSP 1 Score: 503 bits (1296), Expect = 7.05e-175
Identity = 237/280 (84.64%), Postives = 257/280 (91.79%), Query Frame = 0


Query: 9   DREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAV 68
           DREGGRPL+L+VEKLK DG+VG+ +RLRHKF APCVYYFF+DPEL        +KNDE+V
Sbjct: 275 DREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPEL-------ESKNDESV 334

Query: 69  SSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQN 128
           SSTANVKKPPTE SQRRSFLVFFCIPVSPGKSRLIW+FPRNF KW+N+IVPRW+FHIGQN
Sbjct: 335 SSTANVKKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQN 394

Query: 129 LILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKY 188
           L+LDSDMYFLRVEEHK EEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG+VDWGGKY
Sbjct: 395 LVLDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKY 454

Query: 189 SGSLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGVL 248
           SGSLPP+PPREQVFERYWSHVVNC+SCNGAYKAL IAEV LQ IS+AAIGA+AL K GV+
Sbjct: 455 SGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVI 514

Query: 249 SATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 288
            A  RA IVT+AILCFAASKWLSHFIHKTFHFQVYNHALV
Sbjct: 515 CAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVYNHALV 547

[Close]

BLAST of CsGy1G028670 vs. TAIR 10
Match: AT4G25650.1 (ACD1-like )

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-84
Identity = 155/281 (55.16%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 9   DREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAV 68
           DREGG+PLE+ V+KL   GF  + E     F APCVY   TDP           +  E  
Sbjct: 267 DREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDP--------LPEQEHEYP 326

Query: 69  SSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQN 128
           +  A+ K     +S+RR  L+F CIPVSPG+SRLIW FPRNFG +++ IVPRW+FHIGQN
Sbjct: 327 APAASDK---AALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQN 386

Query: 129 LILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKY 188
            ILDSD++ L VEE K  E GP NW KAC++P KSDA VV FRRW NKY+  RVDW GK+
Sbjct: 387 TILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKF 446

Query: 189 SG-SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGV 248
               LPP PPREQ+F+RYWSHV NC SC  A+K LN  EV LQ  S+A IG +A++K   
Sbjct: 447 DPFLLPPTPPREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTT 506

Query: 249 LSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 289
           +S   R  ++  A+L FAASKWLSHFI+KTFH+  YNHA+V
Sbjct: 507 MSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAVV 536

[Close]

BLAST of CsGy1G028670 vs. TAIR 10
Match: AT4G25650.2 (ACD1-like )

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-84
Identity = 155/281 (55.16%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 9   DREGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAV 68
           DREGG+PLE+ V+KL   GF  + E     F APCVY   TDP           +  E  
Sbjct: 290 DREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDP--------LPEQEHEYP 349

Query: 69  SSTANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQN 128
           +  A+ K     +S+RR  L+F CIPVSPG+SRLIW FPRNFG +++ IVPRW+FHIGQN
Sbjct: 350 APAASDK---AALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQN 409

Query: 129 LILDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKY 188
            ILDSD++ L VEE K  E GP NW KAC++P KSDA VV FRRW NKY+  RVDW GK+
Sbjct: 410 TILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKF 469

Query: 189 SG-SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGV 248
               LPP PPREQ+F+RYWSHV NC SC  A+K LN  EV LQ  S+A IG +A++K   
Sbjct: 470 DPFLLPPTPPREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTT 529

Query: 249 LSATVRATIVTVAILCFAASKWLSHFIHKTFHFQVYNHALV 289
           +S   R  ++  A+L FAASKWLSHFI+KTFH+  YNHA+V
Sbjct: 530 MSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAVV 559

The following BLAST results are available for this feature:

BLAST of CsGy1G028670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W496	1.6e-83	55.16	Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop...	[more]
O49931	1.0e-10	26.09	Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1	[more]

BLAST of CsGy1G028670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653477.1	7.28e-216	100.00	hypothetical protein Csa_007080 [Cucumis sativus]	[more]
XP_011660064.1	1.41e-206	100.00	protochlorophyllide-dependent translocon component 52, chloroplastic isoform X1 ...	[more]
KAA0055704.1	8.41e-206	95.14	protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]	[more]
TYK09957.1	2.93e-191	94.39	protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]	[more]
XP_038880155.1	4.44e-189	91.46	protochlorophyllide-dependent translocon component 52, chloroplastic-like [Benin...	[more]

BLAST of CsGy1G028670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKJ8	4.07e-206	95.14	Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuw...	[more]
A0A0A0LX74	8.77e-204	100.00	Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600180 PE=4...	[more]
A0A5D3CD90	1.42e-191	94.39	Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuw...	[more]
A0A1S4DYB5	4.09e-177	88.26	LOW QUALITY PROTEIN: protochlorophyllide-dependent translocon component 52, chlo...	[more]
A0A6J1HB02	7.05e-175	84.64	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]

BLAST of CsGy1G028670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25650.1	1.1e-84	55.16	ACD1-like	[more]
AT4G25650.2	1.1e-84	55.16	ACD1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013626	Pheophorbide a oxygenase	PFAM	PF08417	PaO	coord: 39..149 e-value: 1.8E-26 score: 92.1
None	No IPR available	GENE3D	3.90.380.10		coord: 7..181 e-value: 1.2E-6 score: 30.5
None	No IPR available	PANTHER	PTHR21266:SF43	SUBFAMILY NOT NAMED	coord: 7..286
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 7..286
None	No IPR available	SUPERFAMILY	55961	Bet v1-like	coord: 83..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G028670.2	CsGy1G028670.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031967	organelle envelope
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity
molecular_function	GO:0046872	metal ion binding