CsGy1G028650 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCTGCGACAATCACCTCTTCTCTTCATCTACTTCACCTTCCAACCACTCTCGTCAAGCCGCCGAGATCGAGATTATTATCGTCCAATAATTTCAAGATCACCACGACGCAACGAAATGTGTTCAGGAATAACTGCGGATCACTCCACACGGCTATGGCGTCCGACGACGTTGTGACTTCGGAACGACGGAAGATGGAGGAGGAGAAGTTTGATTGGTTTTCGGAGTGGTATCCGGTGATGCCGGTGTGCGACTTGGACAAGAAAGTACCGACTGGGAAGAAGGTTTTGGGGTTGGATTTGGTGGTGTGGTGGGATAGGAATGAGAATGCGTGGAAGGTGTTTGATGATAGTTGTCCTCATAGATTGGCGCCGTTGTCGGAAGGGAGGATCGATCAATGGGGGAGGTTGCAGTGTGTGTACCATGGATGGTGCTTCAATGGCTCGGGTGATTGTAAATTCATCCCCCAAGCGCCCCCTGATGGCCCTCCGGTTAGTCTCTTTTCCTTTCTAATGTTTAGTTTTTAAATGTAAAATCAAATTAGATATAAGATCCATTTGCAAGATCATGCAAATTTTCATACAAGTTTGGAAACATCACTAAAGAAAAAATATGAAAAGAGTAACAATTGGTATATAACTTGTGAAGATTTCATAACATCCGTTCATCACATGCAAAATTGTACTGTACGGAGAAAGCCTAATAGTTATCAAATATTTTATACTTTTTGAGTACAATTTTGCTAGTAACGAACACCAAGATCACCCTTTTTCACGACTTTGGTTGGGATAAATTTTGCCCAGCTTACATTTTGTTTTTCTTCTTTTATAGTCAGCAGAAAATATTTTAAATATTTAATTTATATATATGTGTAAAGAAATTGTTATTTTTAAATATATCAAAATGAACTAAAATATTTGTAAAATATAACGATCAAATATTTATAAAATATAACGATTTATTTAGGATGGATTTTTGTATCAAACATATAATGTTATATTTTTATAAATGTTGTCTAAAGACTTTGAATAATCAGCCTTTGATTCCATTTTCACGTATGTTATTTTATTTATTTCAACAAAAAGTAATTATTATTTTATCGTTTTAAATCATTTAAATATCGTATTATCATAAAGGTAGAGTTTTTGCTTAATATGTCTTTGAATCAAAAAGTTTTTTTTAAAAAAAATATAGTAAAATGAATCAAACGTATAATTTGTGAATGATGGATATTAATAGGCGAATTATATTAATGGTTTTTTACAACAAAATCTATGGAATCAAAATGAGAGAAGAGGGAAGAAAAGAGGGTGGAGTGACTTTTGAATTCTTAAATAATTCAAGGGCAAAATAGTATTTTTGGCATGTATGGTGTAACTTGTAAGTTCAATAGTGTAGTAGTTTTGGCATGTATGTCAATTTTCTCAAGTTAGAATTTAGTACCACCATTTGTAAAATTTCATGAATGATTTAATTTGTATGGATTGATAAAATTCTCATAAATATATAATTCTTATCAGGAAGACTATTAGTATAGATTCTAACTTTCTCTTATTACTACAATCAAATTTACAATTTAACATTTTATTATTTTTATCTTTTTTATACCAGACTTTTTTTAAAAACATTTTATAATAAAGATTTTTTTTTAAAAATAGTAAAATAAATTAAAATATTTTTCTAACAATGTCATATAAGTGTTAATATCTATTATTAATAATTTAAAATTTTACTATATAGTGTAAAATAGTAAATATTTTCTAAAATTCGTTATTTTTACAAAATAAATCACTTTTTTTTAAGTATAAAAACGGAAATATATGTTTCGAACAGATAAGGAGTTGAGAGGGAGTAAAAGCTTTGGTGAGCATCTTTAGAAAATGGAGAAGCATGTTAGCTTTTGGAGTCCTAATGCTTTTGAAGGGTTCACGTGCAAATCTTTTTTTTTTTCCATGTTTGGTTGATCTTTTTCGCTTAGTACGGTGTGTCAGCCTTTTCAGTATTTTACAGCATTAAGACTCGTGGCCACGTGAAAGTTATTATCCTGGCAAGTTCTTCAGGGTTGTGCTATCACGTTGGACTTGCGAGGAAGTTGTCTTCACTTGCTAGGTCTTGCTTTATTTATTGGAAGGTGGAGAAAGGCTTGGACGATATTGTCTACCACTGTGATTTGCTAGTAGCGTTCAAGATTTCTCTTTTTTCTTTTTATTGAAGACGTTTGTTCGTATCAGAGTTGTTAGTGCTATGATTGAGCACTGCCTTTAGGGGAGTAGGGTTGTTTTTTTTTTCTTCTAATAGTTGGCGGGATGTGTTTGATCTTAAGTGTGCAGAAAGGTTCGTTGGGTTGGGTTGGTTTGTCTACATTCTCAATAGACTTGTTTTCTTTAAGTATGCTAGTGTATTTTTTTCATTTTTTTAAAATGAAAGTTGTTTCCATTTAAACAATCACAAGTTTTTAAATTTTAAAGCATTAGTTATTTAATGAACTATGATTATTTAAATAAGAGATGTAAAATTATTTAAGTTAAAATAAAAGATTTTTATTTAATATGAATTATCTTTTATCTATATATTTTAAATAAGGTCTTGAATAATTAATTGGGCCCTTGTACAATTAAACTTTTAATGCTAATTGAGTTGAGAGATTTCTCTCTTCACCAAATTTTGTTCTTGAAGTTATTCGATTACCTTTTTTATTATGATGTATTATTGAAGATCTATAACTAGTTTTCACTTCGTACCAGTTGATAAGAAATATATTAAAGACGGATGAATTTAAAGGAGTTTGAGTTTATCTTTGATTAGATTCAAACACAAATTTAGGATAACATGTTTTTATTTAAGTTTTCATTATAACTTAAAAGAGTTGATCTACCAGAAGGAATTTCTTTTAAGTTTATTACTTTGTTCAAACTTAATAATATTTACTACGAGACGAAAAGCACTCAGGTGGAATTGGCGGTTAACAGAAGCGCACTTTTGTCGGTTAGTTAAGACATCTCTTACCATATTGTAATTGGTTTGAATTTTCACCATCATATTTGTGAAGTAATATTTGAAGAACATACACATATTATCATATTATTGAGAATAACCATTTTCATATATAACTCTGTTGAAGGCTGAATCCACAAATATTATGAACATTTACATCAAATGCTATAACATGCAGGTTCACTCGTCCAAGAAGGCATGTGCCGCTGTATATCCGAGCACGACGCAGAACGGCATAGTGTGGTTCTGGCCAAACTTGGACCCCAAATTCAAAGATATTATTATGGAGAAGAAACCTCCCTTTATTCCGGAGCTAGACGACCCATCTTATGTCAAGTTAGAGGGGAATAGGGATATGGCATACGGGTAAGCATTTCCGTTGTTTGTTCTTTCTGATTTTTGGTGCATTTTGAAATGTCAAATGGAAAGAGCCAAAGCAAAACGAATCAAAATTCTGTTCACTCATTCTAGTCAATGTTCCAAAAAACTATTTAGGCTTATGCCTTGAGGCCGTTGACTGTTGATTCATTTGAACTTAATTCATTCATTTGAACTTCTGAGCATACCGATGATTTAATACGGTATAAGAAAAGTAAATTGCGAGTTTGAACTCCTATAATATCATTTAGTAGTGATATCCTAATCCGAGTACTTTGTCATTGACAATTGGAGTTTCCAGGTATGAGGTACTGATTGAAAATCTTATGGACCTTGCCCATCTTCCATACGCTCACTACGGGATAATGCCAGCCCCGCCACCAATGAAAAACAGATATCATTGCCAATTTATTCTTCTCAACTCTTGCATTTGA ATGGAAGCTGCGACAATCACCTCTTCTCTTCATCTACTTCACCTTCCAACCACTCTCGTCAAGCCGCCGAGATCGAGATTATTATCGTCCAATAATTTCAAGATCACCACGACGCAACGAAATGTGTTCAGGAATAACTGCGGATCACTCCACACGGCTATGGCGTCCGACGACGTTGTGACTTCGGAACGACGGAAGATGGAGGAGGAGAAGTTTGATTGGTTTTCGGAGTGGTATCCGGTGATGCCGGTGTGCGACTTGGACAAGAAAGTACCGACTGGGAAGAAGGTTTTGGGGTTGGATTTGGTGGTGTGGTGGGATAGGAATGAGAATGCGTGGAAGGTGTTTGATGATAGTTGTCCTCATAGATTGGCGCCGTTGTCGGAAGGGAGGATCGATCAATGGGGGAGGTTGCAGTGTGTGTACCATGGATGGTGCTTCAATGGCTCGGGTGATTGTAAATTCATCCCCCAAGCGCCCCCTGATGGCCCTCCGGTTCACTCGTCCAAGAAGGCATGTGCCGCTGTATATCCGAGCACGACGCAGAACGGCATAGTGTGGTTCTGGCCAAACTTGGACCCCAAATTCAAAGATATTATTATGGAGAAGAAACCTCCCTTTATTCCGGAGCTAGACGACCCATCTTATGTCAAGTTAGAGGGGAATAGGGATATGGCATACGGGTATGAGGTACTGATTGAAAATCTTATGGACCTTGCCCATCTTCCATACGCTCACTACGGGATAATGCCAGCCCCGCCACCAATGAAAAACAGATATCATTGCCAATTTATTCTTCTCAACTCTTGCATTTGA ATGGAAGCTGCGACAATCACCTCTTCTCTTCATCTACTTCACCTTCCAACCACTCTCGTCAAGCCGCCGAGATCGAGATTATTATCGTCCAATAATTTCAAGATCACCACGACGCAACGAAATGTGTTCAGGAATAACTGCGGATCACTCCACACGGCTATGGCGTCCGACGACGTTGTGACTTCGGAACGACGGAAGATGGAGGAGGAGAAGTTTGATTGGTTTTCGGAGTGGTATCCGGTGATGCCGGTGTGCGACTTGGACAAGAAAGTACCGACTGGGAAGAAGGTTTTGGGGTTGGATTTGGTGGTGTGGTGGGATAGGAATGAGAATGCGTGGAAGGTGTTTGATGATAGTTGTCCTCATAGATTGGCGCCGTTGTCGGAAGGGAGGATCGATCAATGGGGGAGGTTGCAGTGTGTGTACCATGGATGGTGCTTCAATGGCTCGGGTGATTGTAAATTCATCCCCCAAGCGCCCCCTGATGGCCCTCCGGTTCACTCGTCCAAGAAGGCATGTGCCGCTGTATATCCGAGCACGACGCAGAACGGCATAGTGTGGTTCTGGCCAAACTTGGACCCCAAATTCAAAGATATTATTATGGAGAAGAAACCTCCCTTTATTCCGGAGCTAGACGACCCATCTTATGTCAAGTTAGAGGGGAATAGGGATATGGCATACGGGTATGAGGTACTGATTGAAAATCTTATGGACCTTGCCCATCTTCCATACGCTCACTACGGGATAATGCCAGCCCCGCCACCAATGAAAAACAGATATCATTGCCAATTTATTCTTCTCAACTCTTGCATTTGA MEAATITSSLHLLHLPTTLVKPPRSRLLSSNNFKITTTQRNVFRNNCGSLHTAMASDDVVTSERRKMEEEKFDWFSEWYPVMPVCDLDKKVPTGKKVLGLDLVVWWDRNENAWKVFDDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHSSKKACAAVYPSTTQNGIVWFWPNLDPKFKDIIMEKKPPFIPELDDPSYVKLEGNRDMAYGYEVLIENLMDLAHLPYAHYGIMPAPPPMKNRYHCQFILLNSCI* Homology
BLAST of CsGy1G028650 vs. ExPASy Swiss-Prot
Match: Q8W496 (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 7.6e-96 Identity = 166/281 (59.07%), Postives = 197/281 (70.11%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy Swiss-Prot
Match: Q0DV66 (Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PAO PE=2 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.5e-46 Identity = 87/184 (47.28%), Postives = 115/184 (62.50%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy Swiss-Prot
Match: Q9FYC2 (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 5.5e-46 Identity = 88/202 (43.56%), Postives = 122/202 (60.40%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy Swiss-Prot
Match: O49931 (Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.2e-30 Identity = 67/188 (35.64%), Postives = 99/188 (52.66%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy Swiss-Prot
Match: Q9SK50 (Protein TIC 55, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC55 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 4.2e-30 Identity = 72/232 (31.03%), Postives = 111/232 (47.84%), Query Frame = 0
BLAST of CsGy1G028650 vs. NCBI nr
Match: XP_011660063.2 (protochlorophyllide-dependent translocon component 52, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 557 bits (1436), Expect = 3.05e-196 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
BLAST of CsGy1G028650 vs. NCBI nr
Match: XP_031741410.1 (protochlorophyllide-dependent translocon component 52, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 548 bits (1413), Expect = 1.44e-192 Identity = 259/271 (95.57%), Postives = 259/271 (95.57%), Query Frame = 0
BLAST of CsGy1G028650 vs. NCBI nr
Match: XP_008451032.1 (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis melo]) HSP 1 Score: 509 bits (1310), Expect = 4.22e-177 Identity = 243/260 (93.46%), Postives = 248/260 (95.38%), Query Frame = 0
BLAST of CsGy1G028650 vs. NCBI nr
Match: KGN66706.2 (hypothetical protein Csa_007259 [Cucumis sativus]) HSP 1 Score: 491 bits (1265), Expect = 8.51e-171 Identity = 231/241 (95.85%), Postives = 234/241 (97.10%), Query Frame = 0
BLAST of CsGy1G028650 vs. NCBI nr
Match: KAE8653476.1 (hypothetical protein Csa_007178 [Cucumis sativus]) HSP 1 Score: 461 bits (1186), Expect = 3.76e-162 Identity = 222/286 (77.62%), Postives = 240/286 (83.92%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy TrEMBL
Match: A0A1S3BRB5 (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492438 PE=4 SV=1) HSP 1 Score: 509 bits (1310), Expect = 2.04e-177 Identity = 243/260 (93.46%), Postives = 248/260 (95.38%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy TrEMBL
Match: A0A0A0M2F3 (Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600160 PE=4 SV=1) HSP 1 Score: 488 bits (1257), Expect = 4.15e-174 Identity = 227/228 (99.56%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy TrEMBL
Match: A0A5A7UQ27 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00870 PE=4 SV=1) HSP 1 Score: 455 bits (1171), Expect = 3.27e-160 Identity = 219/286 (76.57%), Postives = 238/286 (83.22%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy TrEMBL
Match: A0A5A7UN46 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00880 PE=4 SV=1) HSP 1 Score: 444 bits (1142), Expect = 2.59e-152 Identity = 212/234 (90.60%), Postives = 220/234 (94.02%), Query Frame = 0
BLAST of CsGy1G028650 vs. ExPASy TrEMBL
Match: A0A1S4DYB5 (LOW QUALITY PROTEIN: protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492541 PE=4 SV=1) HSP 1 Score: 433 bits (1113), Expect = 1.12e-147 Identity = 209/272 (76.84%), Postives = 227/272 (83.46%), Query Frame = 0
BLAST of CsGy1G028650 vs. TAIR 10
Match: AT4G25650.2 (ACD1-like ) HSP 1 Score: 351.7 bits (901), Expect = 5.4e-97 Identity = 166/281 (59.07%), Postives = 197/281 (70.11%), Query Frame = 0
BLAST of CsGy1G028650 vs. TAIR 10
Match: AT4G25650.1 (ACD1-like ) HSP 1 Score: 348.6 bits (893), Expect = 4.6e-96 Identity = 162/266 (60.90%), Postives = 192/266 (72.18%), Query Frame = 0
BLAST of CsGy1G028650 vs. TAIR 10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ) HSP 1 Score: 186.0 bits (471), Expect = 3.9e-47 Identity = 88/202 (43.56%), Postives = 122/202 (60.40%), Query Frame = 0
BLAST of CsGy1G028650 vs. TAIR 10
Match: AT2G24820.1 (translocon at the inner envelope membrane of chloroplasts 55-II ) HSP 1 Score: 133.3 bits (334), Expect = 3.0e-31 Identity = 72/232 (31.03%), Postives = 111/232 (47.84%), Query Frame = 0
BLAST of CsGy1G028650 vs. TAIR 10
Match: AT1G44446.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ) HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17 Identity = 53/181 (29.28%), Postives = 78/181 (43.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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