CsGy1G027315 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G027315
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Beta-mannosyltransferase
Location	Gy14Chr1: 25723001 .. 25725915 (-)
RNA-Seq Expression	CsGy1G027315
Synteny	CsGy1G027315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAAACTAGAGAATTTTTTTCACAATTTTTTAAAAGAAGGGACCAAAGGAACATTGCTTGCTTGACGCACACACAAGAGAACACAAAAAACCGAGTCAGCGGCAGGCAACGCGAGTTCAAACTTCAACTACTTTCAATGACGGACCCACGAGCTCCACTCCCATCTTCATCTTCATCAACTTACTTACCTCCAAATGATTCACTACCTAAACGCTTCAAGGTCTTATGGCGGGTTCTATTGATCTCCAATTTCGCTCTTTCAGGTTCACTCTACTATCTCCTCGTACGTTTTCCTTTTTCCTCGCATTCTGTGATGGGGTATTTTTCTTTAATCCGAATCTCGATCCTGAACTTCCCAGATCCTGAATTGACTTTTGGAAATGAAAAAAAAAATGGAGTTTGTGATGAAAATAATCTGTATGTTGAATGTTTTTGCTTTTGTTTTTGCACGCCAGGTGTTTGATGTAATGACTGTGATGGATTTCTTTGTTTAGTTGTAAAATATGTTGCTAGTTGCTTCTACTGCTGTGATTGGTTTGTGGAATCTCTTTGTTTATGTTGTCTGGATGATTCTTGCTTGGAAGAAAGTTGTTAATTTCATTTCTTCATACTTCCGATGTATGAGATTTATAGCCTGAGAGATAGAGGATTAGTAACATGCAAAAGTTGATATTAATAGAGAGAAATGTATGAGCACACGCAGGACTGTTGAATTCGATATGTGCCGATCTTTGTGTTTGGATTCAAAAGATGAGATTGCTGAGAAAATGTGTCAATTTTCGTTGAATGAGGACTCTCACGATGTGATATGCTATGGCTACTATAACATTGTTGCCTATGCATAAAAGTTGGCTTGTAAAGATTGACATTTTTTCTTTCTTAGTTCCTCCAGTCTGATCTTATCTTCTATATGCTACACTGTTATTCATGAACTTCACTAGTTAGAGCATGACTCTAAGCAGCGGGAAAGGTTTCTTTCAAGATGTGGCATGAATCTCATTTTAAAGGAGAGGGATGGGATATTCATTATATTATAAGTGTTGTAAGCTAGAAAATTAAGGTTAGGTTGGAAAGTCATTTGAGTCTCGTTTGGTAATTATTTGGTTTTTAAAAGTTAATAATATTTCTCTCAATTTATTAGGATGGTTTCCATCTTTTATAAGTAAAGTAATTGAATTCTTAATTAAATTTCAAAAACATAAAATAAGTTTTTCAAAACTATTTTTTTAGTTTTCAAAAATTGATTTGTTTTCTGAAGTGGTAGAATGATAACTAAGCAAGAAATTTAGAGATGGAAGGATTGTGTTTATAGGCTTAATTATCAAAAAGTAATAGTTACTAAACAGGACATTGATTTTTTGTTTTTGAAAATTAAGTTTATAAATACTACTTCTACCTATAAGTTTATTTGTATTGTGTTGGTGGTTTCGAATATGAAGCCAATTTTTTAAATTAAAAACAAGTCTACATTTAAAATTTTCTATTTGTTTTTGGAAGTTAAATAAGAACTCATACCATTGTTTAAGAAAGTTAAAATCTATAGCATGGAAATTTAAAGGAAACAAATATAAATTTCAAAAACCGAAAATTAAAAACGAAATAGTAGGCTTAAACTTGTGGTTTTCTAACTAAAAGACCCGAATCAAAGAGTGAAGGAATGCCTACTCTATCTTGAAGTCACGTGATCCTCGATCTGATTAGTCTATGAATTGGCATCAATCAGTTTGGGAACGTAGTTGCTATCGTTAACCAGCAAAAAAGAAAAGAAAAGATTCTTATTTCTCGTAGAACATCTCAAGTCAGATACTTCTTATATAGATCTGCCCAATTCTTATATATCTTGCAAGATTTCTTTAAATTTCAAATAAATGGAGTGACATTAACTTCAAGCAGGAGAAAGAGGAAGATGTAATCTCTTCAATTTCTCATCTAAGTTAGGTTCAACTTTAGATGATTCCTTCCTTATTTTCTCGAATGGTTTGGGTTAGTTGATAATCTGTCCATTGATGATAAGGTAATAACCAAGATCACCTGTTCAATTTCCTTTCCAAAGTGAGCGTAGGAGTCTTAATCTGAAGTCTGGCTATCTACTATCTTGCGTTTCTCAATGAACTGATCATAGTTCTCTTTTTTTCTTCATTGCATTGTGCTCGAAACTAGAATATTCGTATGAGAGACATTTACTTCAGCCACCTGCCATGCAATTGAATTTACTTTAATGATGTCAAACATTAGTTGCCAGAGTGATCTTATCTCAACCTAAACTAGCATGACCTTTCTCCTTGGAGGAGGTTGGATGTTTGATTTCCCACCCCAATTGTTGTTACGCAATTAAGACATCTACTCCTTCCTACAAGACCTTTAAACCCCTTCGTTTCACCCACATTTTTTGTACTGTTAAGAAAAACATTAAACATTAGTTTGCAACTGATGTGTATTATTTCATGCATTGCAGCCTACATGTTTGCAAGTGCAAGGAAGAGACATTTTAATCAGCTGGAGAATGATCAAGTAGAAAAACAAAGTGATAGTGAAATTATTACAGAAATCCCTTCAACAATTATGGTGGATACCACTGGCATAGTTACTGAGAACGTGTTGGAAGATCAGCAGCAAGAACCTGACCAGGGGGTGGTTAGTGGTTGGAGAGAAAAGTTAGGATTTAGTAGAAAAGTGAATTGATAGTGAGATGTTGATTCTTTAAACAGTTCATTCTCTCATAACCGATTGAAGCTCATTCAGGTAAATATGGTGGGTTGCTGCAAAATTTTCTTTAAGACTATTTTGTAGGCGAATGATTTATTGCGGTAGATTTGTTTGCTTGTAATATAATTCTAAGAATATTAGCTCATATAATAATCATCTTTTTTGCTGGTAAGTTTTATTATTTAAGAAATCGCACCTCTGAGTCGG

mRNA sequence

GTCCAAACTAGAGAATTTTTTTCACAATTTTTTAAAAGAAGGGACCAAAGGAACATTGCTTGCTTGACGCACACACAAGAGAACACAAAAAACCGAGTCAGCGGCAGGCAACGCGAGTTCAAACTTCAACTACTTTCAATGACGGACCCACGAGCTCCACTCCCATCTTCATCTTCATCAACTTACTTACCTCCAAATGATTCACTACCTAAACGCTTCAAGGTCTTATGGCGGGTTCTATTGATCTCCAATTTCGCTCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAGACATTTTAATCAGCTGGAGAATGATCAAGTAGAAAAACAAAGTGATAGTGAAATTATTACAGAAATCCCTTCAACAATTATGGTGGATACCACTGGCATAGTTACTGAGAACGTGTTGGAAGATCAGCAGCAAGAACCTGACCAGGGGGTGGTTAGTGGTTGGAGAGAAAAGTTAGGATTTAGTAGAAAAGTGAATTGATAGTGAGATGTTGATTCTTTAAACAGTTCATTCTCTCATAACCGATTGAAGCTCATTCAGGTAAATATGGTGGGTTGCTGCAAAATTTTCTTTAAGACTATTTTGTAGGCGAATGATTTATTGCGGTAGATTTGTTTGCTTGTAATATAATTCTAAGAATATTAGCTCATATAATAATCATCTTTTTTGCTGGTAAGTTTTATTATTTAAGAAATCGCACCTCTGAGTCGG

Coding sequence (CDS)

ATGACGGACCCACGAGCTCCACTCCCATCTTCATCTTCATCAACTTACTTACCTCCAAATGATTCACTACCTAAACGCTTCAAGGTCTTATGGCGGGTTCTATTGATCTCCAATTTCGCTCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAGACATTTTAATCAGCTGGAGAATGATCAAGTAGAAAAACAAAGTGATAGTGAAATTATTACAGAAATCCCTTCAACAATTATGGTGGATACCACTGGCATAGTTACTGAGAACGTGTTGGAAGATCAGCAGCAAGAACCTGACCAGGGGGTGGTTAGTGGTTGGAGAGAAAAGTTAGGATTTAGTAGAAAAGTGAATTGA

Protein sequence

MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN*

Homology

[Close]

BLAST of CsGy1G027315 vs. NCBI nr
Match: XP_004135711.1 (uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 8.00e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60
           MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND
Sbjct: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117

[Close]

BLAST of CsGy1G027315 vs. NCBI nr
Match: XP_008450851.1 (PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo])

HSP 1 Score: 219 bits (559), Expect = 8.66e-72
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60
           MT  R PLPSSSSSTYLPPNDSLPKRFKVLWR+LLISNFALSAYMFASARKRHFN+LEND
Sbjct: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEP+QGVVSGWREKLGFSRK+N
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 117

[Close]

BLAST of CsGy1G027315 vs. NCBI nr
Match: XP_023530326.1 (uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151 bits (382), Expect = 1.09e-44
Identity = 82/127 (64.57%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60
           M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+   Q+END
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60

Query: 61  QVEKQ------------SDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWRE 115
           + EK             SDSEI+ EIPST+MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTLMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of CsGy1G027315 vs. NCBI nr
Match: KAG6588036.1 (hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021933.1 hypothetical protein SDJN02_15661 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150 bits (380), Expect = 2.20e-44
Identity = 82/127 (64.57%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60
           M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+   Q+END
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60

Query: 61  QVEKQ------------SDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWRE 115
           + EK             SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of CsGy1G027315 vs. NCBI nr
Match: XP_011659979.1 (uncharacterized protein LOC101210247 isoform X2 [Cucumis sativus] >KGN66613.2 hypothetical protein Csa_007112 [Cucumis sativus])

HSP 1 Score: 149 bits (377), Expect = 2.35e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 44  YMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVV 103
           YMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVV
Sbjct: 21  YMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVV 80

Query: 104 SGWREKLGFSRKVN 117
           SGWREKLGFSRKVN
Sbjct: 81  SGWREKLGFSRKVN 94

[Close]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL
Match: A0A0A0M1X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 3.87e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60
           MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND
Sbjct: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117

[Close]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL
Match: A0A1S3BR82 (uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=4 SV=1)

HSP 1 Score: 219 bits (559), Expect = 4.19e-72
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60
           MT  R PLPSSSSSTYLPPNDSLPKRFKVLWR+LLISNFALSAYMFASARKRHFN+LEND
Sbjct: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEP+QGVVSGWREKLGFSRK+N
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 117

[Close]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL
Match: A0A6J1HYA0 (uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467730 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 3.05e-44
Identity = 83/127 (65.35%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQ---- 60
           M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+   Q    
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMESD 60

Query: 61  --------LENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWRE 115
                   LEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENIPEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL
Match: A0A6J1EIP0 (uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC111433716 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 7.14e-43
Identity = 82/127 (64.57%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQ---- 60
           M DPRA L S SS   L PND LP+RFKV+WRVLLISNFALSAYMFASARK+   Q    
Sbjct: 1   MADPRASLSSLSSPPSLLPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENN 60

Query: 61  --------LENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWRE 115
                   LEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL
Match: A0A6J1D315 (uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016544 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 4.56e-40
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MTDPRAPLPSSSSSTY-LPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEN 60
           MTDPRAPLPSSSS    LPPND LP+RFKV+WRVLLISNFAL+AYMFA+ARK+   ++E 
Sbjct: 1   MTDPRAPLPSSSSPPPPLPPNDLLPRRFKVIWRVLLISNFALAAYMFANARKKDLGRMEK 60

Query: 61  DQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQ 100
           D VEK SD E++T IPST+MVDTT I  EN+ ED Q+EP Q
Sbjct: 61  DPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 101

The following BLAST results are available for this feature:

BLAST of CsGy1G027315 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G027315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135711.1	8.00e-77	100.00	uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus]	[more]
XP_008450851.1	8.66e-72	94.02	PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo]	[more]
XP_023530326.1	1.09e-44	64.57	uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo]	[more]
KAG6588036.1	2.20e-44	64.57	hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011659979.1	2.35e-44	100.00	uncharacterized protein LOC101210247 isoform X2 [Cucumis sativus] >KGN66613.2 hy...	[more]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1X9	3.87e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1	[more]
A0A1S3BR82	4.19e-72	94.02	uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=...	[more]
A0A6J1HYA0	3.05e-44	65.35	uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EIP0	7.14e-43	64.57	uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A6J1D315	4.56e-40	69.31	uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of CsGy1G027315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G027315.1	CsGy1G027315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane