CsGy1G024807 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G024807
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr1: 23748199 .. 23748767 (+)
RNA-Seq ExpressionCsGy1G024807
SyntenyCsGy1G024807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCTCTAGTCTCATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGAATGATCGGCTCTACATGGTTAAAGAAAGAAAAGAACTAAAAGAAGTGGGCTGGTAGAGACT

mRNA sequence

TCCCTCTAGTCTCATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGAATGATCGGCTCTACATGGTTAAAGAAAGAAAAGAACTAAAAGAAGTGGGCTGGTAGAGACT

Coding sequence (CDS)

ATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Protein sequence

MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM*
Homology
BLAST of CsGy1G024807 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 336 bits (862), Expect = 1.79e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
           HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164
           SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of CsGy1G024807 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 4.19e-106
Identity = 152/164 (92.68%), Postives = 156/164 (95.12%), Query Frame = 0

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIP+MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHI KCRFFSYHHFP LPLFYYNCVGN
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
           HKILCNPIP SSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKW SQG  VSTI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164
           SEHKAE EEIGGCTPWVLVG+IVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of CsGy1G024807 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223 bits (567), Expect = 1.68e-71
Identity = 114/164 (69.51%), Postives = 128/164 (78.05%), Query Frame = 0

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIPIM K+SS TH LTSDPSPFPSLLLLLLIFT HI  CRFFSY      P  YY+C G 
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYF-LSASPSLYYHCAGR 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
              LCNP+ +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI
Sbjct: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120

Query: 121 SE---HKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 161
            +   H+ E E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

BLAST of CsGy1G024807 vs. NCBI nr
Match: XP_027354652.1 (uncharacterized protein LOC113864767 [Abrus precatorius])

HSP 1 Score: 51.2 bits (121), Expect = 9.24e-05
Identity = 44/158 (27.85%), Postives = 69/158 (43.67%), Query Frame = 0

Query: 6   QKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKILC 65
            + SS     T +P P+P LLLL +IF F +    +FSY                     
Sbjct: 6   SRASSVLEGFTLNPLPYPVLLLLAVIFIF-LGISWYFSYEE------------------- 65

Query: 66  NPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISE--H 125
             +  ++ ++L   GW L A P+ L+++V WLS  E+     + W    F  ST  E   
Sbjct: 66  --VVENTEQKL---GWVLFATPVVLIILVRWLSSMEN-----KDW----FSGSTPWEGNR 125

Query: 126 KAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 161
           +       G +PW +  +IV+L  + Q Q++  H  FV
Sbjct: 126 RTHQNSTEGSSPWGVAALIVVLLILVQYQSIFLHSWFV 129

BLAST of CsGy1G024807 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 329 bits (843), Expect = 5.94e-114
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 5   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 64
           MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 124
           CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164
           AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

BLAST of CsGy1G024807 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 310 bits (794), Expect = 2.03e-106
Identity = 152/164 (92.68%), Postives = 156/164 (95.12%), Query Frame = 0

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIP+MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHI KCRFFSYHHFP LPLFYYNCVGN
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
           HKILCNPIP SSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKW SQG  VSTI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164
           SEHKAE EEIGGCTPWVLVG+IVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8653331.11.79e-116100.00hypothetical protein Csa_023242 [Cucumis sativus][more]
KAA0043344.14.19e-10692.68hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAG6573437.11.68e-7169.51hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_027354652.19.24e-0527.85uncharacterized protein LOC113864767 [Abrus precatorius][more]
Match NameE-valueIdentityDescription
A0A0A0LW235.94e-114100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
A0A5A7TJ522.03e-10692.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G024807.1CsGy1G024807.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane