CsGy1G024473 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G024473
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	30-kDa cleavage and polyadenylation specificity factor 30
Location	Gy14Chr1: 23326819 .. 23327022 (-)
RNA-Seq Expression	CsGy1G024473
Synteny	CsGy1G024473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGTAGTGGACACGATGAAGGAATGCAATATAAGCAGGGATCAAAAGCTTATCCTGATGATCAATATGGAATGGGAACAACCTTTAGGAATGAGGAAAGTGAAAGTGAGAACGAGGCACCTCGGCGATCAAGGCATGGAGAGGGGAAGAAGAAGCGGAGAGGTTCAGAAGGAGATGCCTCTGCAATCTCTGATCAGTGA

mRNA sequence

ATGCTAGGTAGTGGACACGATGAAGGAATGCAATATAAGCAGGGATCAAAAGCTTATCCTGATGATCAATATGGAATGGGAACAACCTTTAGGAATGAGGAAAGTGAAAGTGAGAACGAGGCACCTCGGCGATCAAGGCATGGAGAGGGGAAGAAGAAGCGGAGAGGTTCAGAAGGAGATGCCTCTGCAATCTCTGATCAGTGA

Coding sequence (CDS)

ATGCTAGGTAGTGGACACGATGAAGGAATGCAATATAAGCAGGGATCAAAAGCTTATCCTGATGATCAATATGGAATGGGAACAACCTTTAGGAATGAGGAAAGTGAAAGTGAGAACGAGGCACCTCGGCGATCAAGGCATGGAGAGGGGAAGAAGAAGCGGAGAGGTTCAGAAGGAGATGCCTCTGCAATCTCTGATCAGTGA

Protein sequence

MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ*

Homology

[Close]

BLAST of CsGy1G024473 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.5e-04
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 22  DQYGMGTTFRNEESES--ENEAPRRSRHGEGKKKR 55
           +Q+ +G + RNEESES  E+EAPRRSRHGEGKK+R
Sbjct: 597 EQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of CsGy1G024473 vs. NCBI nr
Match: KAE8653312.1 (hypothetical protein Csa_023330 [Cucumis sativus])

HSP 1 Score: 129 bits (324), Expect = 1.70e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
          MLGSGHDEGMQYK GSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD
Sbjct: 1  MLGSGHDEGMQYKHGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60

Query: 61 ASAISDQ 67
          ASAISDQ
Sbjct: 61 ASAISDQ 67

[Close]

BLAST of CsGy1G024473 vs. NCBI nr
Match: XP_011648522.2 (LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucumis sativus])

HSP 1 Score: 129 bits (324), Expect = 7.79e-33
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
           MLGSGHDEGMQYK GSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD
Sbjct: 647 MLGSGHDEGMQYKHGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 706

Query: 61  ASAISDQ 67
           ASAISDQ
Sbjct: 707 ASAISDQ 713

[Close]

BLAST of CsGy1G024473 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo] >KAA0036926.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa] >TYK05548.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 4.60e-31
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
           ML SGHDEGMQYKQGSKAYPD+QYGMGTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGD
Sbjct: 644 MLSSGHDEGMQYKQGSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGD 703

Query: 61  ASAISDQ 67
           A+AISDQ
Sbjct: 704 ATAISDQ 710

[Close]

BLAST of CsGy1G024473 vs. NCBI nr
Match: XP_022140120.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia])

HSP 1 Score: 116 bits (290), Expect = 3.28e-28
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1   MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
           M GSGHD+ MQYKQGSKAYPD+QYG+GTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGD
Sbjct: 641 MPGSGHDDEMQYKQGSKAYPDEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGD 700

Query: 61  ASAISDQ 67
           A+ +SDQ
Sbjct: 701 ATVVSDQ 707

[Close]

BLAST of CsGy1G024473 vs. NCBI nr
Match: KAG6573397.1 (30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012560.1 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (289), Expect = 4.48e-28
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 3   GSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDAS 62
           GSGHD+ MQYKQGSKAYPD+QYGMGTT RNEESESE+EAPRRSRHGEGKKKRRGSEGDA+
Sbjct: 642 GSGHDDEMQYKQGSKAYPDEQYGMGTTIRNEESESEDEAPRRSRHGEGKKKRRGSEGDAT 701

Query: 63  AISDQ 67
           AISDQ
Sbjct: 702 AISDQ 706

[Close]

BLAST of CsGy1G024473 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 2.23e-31
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
           ML SGHDEGMQYKQGSKAYPD+QYGMGTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGD
Sbjct: 644 MLSSGHDEGMQYKQGSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGD 703

Query: 61  ASAISDQ 67
           A+AISDQ
Sbjct: 704 ATAISDQ 710

[Close]

BLAST of CsGy1G024473 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 2.23e-31
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
           ML SGHDEGMQYKQGSKAYPD+QYGMGTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGD
Sbjct: 644 MLSSGHDEGMQYKQGSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGD 703

Query: 61  ASAISDQ 67
           A+AISDQ
Sbjct: 704 ATAISDQ 710

[Close]

BLAST of CsGy1G024473 vs. ExPASy TrEMBL
Match: A0A0A0LVW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538260 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 1.17e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRR 55
          MLGSGHDEGMQYK GSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRR
Sbjct: 1  MLGSGHDEGMQYKHGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRR 55

[Close]

BLAST of CsGy1G024473 vs. ExPASy TrEMBL
Match: A0A6J1CE78 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia OX=3673 GN=LOC111010855 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.59e-28
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1   MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGD 60
           M GSGHD+ MQYKQGSKAYPD+QYG+GTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGD
Sbjct: 641 MPGSGHDDEMQYKQGSKAYPDEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGD 700

Query: 61  ASAISDQ 67
           A+ +SDQ
Sbjct: 701 ATVVSDQ 707

[Close]

BLAST of CsGy1G024473 vs. ExPASy TrEMBL
Match: A0A6J1JWQ9 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxima OX=3661 GN=LOC111490386 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.03e-27
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 3   GSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDAS 62
           GSGHD+ MQYKQGSKAYPD+QYGMGT  RNEESESE+EAPRRSRHGEGKKKRRGSEGDA+
Sbjct: 642 GSGHDDEMQYKQGSKAYPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDAT 701

Query: 63  AISDQ 67
           AISDQ
Sbjct: 702 AISDQ 706

[Close]

BLAST of CsGy1G024473 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 44.3 bits (103), Expect = 4.6e-05
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 22  DQYGMGTTFRNEESES--ENEAPRRSRHGEGKKKR 55
           +Q+ +G + RNEESES  E+EAPRRSRHGEGKK+R
Sbjct: 597 EQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

The following BLAST results are available for this feature:

BLAST of CsGy1G024473 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LNK9	6.5e-04	68.57	30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian...	[more]

BLAST of CsGy1G024473 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653312.1	1.70e-37	98.51	hypothetical protein Csa_023330 [Cucumis sativus]	[more]
XP_011648522.2	7.79e-33	98.51	LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30, ...	[more]
XP_008445183.1	4.60e-31	94.03	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me...	[more]
XP_022140120.1	3.28e-28	86.57	30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]	[more]
KAG6573397.1	4.48e-28	90.77	30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita ar...	[more]

BLAST of CsGy1G024473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2W1	2.23e-31	94.03	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m...	[more]
A0A1S3BC28	2.23e-31	94.03	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365...	[more]
A0A0A0LVW1	1.17e-28	98.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538260 PE=4 SV=1	[more]
A0A6J1CE78	1.59e-28	86.57	30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia...	[more]
A0A6J1JWQ9	1.03e-27	89.23	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxi...	[more]

BLAST of CsGy1G024473 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30460.1	4.6e-05	68.57	cleavage and polyadenylation specificity factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G024473.1	CsGy1G024473.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:1990247	N6-methyladenosine-containing RNA binding