CsGy1G023750 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G023750
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CCT domain-containing protein
Location	Gy14Chr1: 22505397 .. 22507341 (-)
RNA-Seq Expression	CsGy1G023750
Synteny	CsGy1G023750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGCATAGTTCATATGTATTGTACTAAAAAAATAAAAGGTGAGACTTTTGGTGGGGGAAAAAGAAAAAGAATTTAAAAAGGTGAGACTTTAATTTGTATATATTGGAATTAATAAAAGGTATTCCCAAAGTAGTAAAAAAGAGAGGGTTTTATTTAGATTGATGGAAGAGAGAGAGGTGTGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAACTTCTTCATGAACAACAAGTTGTTCCTACACCTTCTTCCATTTGGGAAGATGATTTCAGAGCTTTTTTCGACCTCACCCACGAAGAAACCCCCCCGCCGCCGCTGCATCACCCGGACTACTACCATTTCCAGAACCACGTCAATGACGTTATGGAAAACAACAACAAGGTTTCTAATTTGAATTTAAATCTTAACTATGAAGAGGTTTTGGAAGCATGGTCCGACCGTGGATCTCTTTGGGCCGCTGCATCCTCTTCCCATTCCAACGACTCAACTCACACCCCCTATGTAAGCATCGTCATTCCCTCCTTCATCTCCCTTCAGTACTTCCTGCTTCTTTTATCATACCTGAAGTAGTTCCATTTCTGTACATACTTCACACACACACATTCATTGTAAAAGAATAATATGAAAGTTATTGATAATGTTGAATATATATATGAGAGAGTGTGTGTGTGTGTGTGTGTAGATGGGAGAGGTTCCAATAATAAGAATGGAGGAAGAAAGAAGAAGAAGGGTGAAGAGATATAAGGAAAAGCGTCAAGCAAGAATATTCTGTAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCTGACAGAAGGCCTAGAATTAAGGTCTTTCTTTTTTCTTTTATTTCTTTTACTATACTATACTTTACTTATGATCTTATTCATAATTATCATTTCATTTTACACCCCCTAGCTACCTTATTATATTGAAAACCTTTTTCAAAAGCTCATACTCATACGAAGAAAATAGGTACACCCATGGCCATGTATTAACTTCTTTTAAATATATATATATACACTTTAATTTTTAGTCAACTTCTAAAAATAAAAACTACTTTTGAAAATTCTATCTTTTTTAGTTTTCAAAATTAAGCTTGGTTTCTTCAAATTTCAAACATGGGTGGAGTACTAGAAAACCCTAAAGGATGAAGACCCCTTTTAAGTAATCATTTTGGTCATGGTTTATGAAAAATGTGATTTGAATATTCCATCGATGATGTGAAGAAATTAAAGTGTTTATTTGATTTGACACAGGGGCGTTTTGTGAAGACAGATTGTTGAATGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGTTGAAAAATATCTCAACACAACAATAAAAGTATCTCTCCAACTTTTCCTTTTAACATTATTCTTCATGAAAATATCTAAAATTTGTATGCACATAGATATAATATATCTGTGTGATGCTCAGAAGCTTTGTGTGTGGGACTGTGGGGTTTCTAATTTCAATAATGGTGGGTCTGATCTCCAGAGGGACCCCAACTTAATTGTCCATTTATTGAATTGATACACACCCTCTCAGCTTCACCATACCTTTAGCTACATTTGTTACTCATCTCATCATCTTCTTCATCATCATCATCACTCATCACTCTCTCAACAAACCTTAAATTATATATTGTAACAACAGAACTTCCCCATCACCTTTTCAAGTGTGAGTGTGTGTTTGGACACCACAGACTTAATTAAGGAGCACTCTGATGGAAATGTTTCATATTTTCATGATCCACTTTGGTGTACCCCAACAACATGATCATTAATTACATATTGTTTGAATTGTCAAAACATATATACTTCCTTTTTAAGATTTAAAGGCCAAATTTATCATCCGTGGTCTCCAAATTCATCTAATAAAATCTCAAAACTTTTAATTGTAAATCCATTATTGAATAAAGATG

mRNA sequence

CGTGCATAGTTCATATGTATTGTACTAAAAAAATAAAAGGTGAGACTTTTGGTGGGGGAAAAAGAAAAAGAATTTAAAAAGGTGAGACTTTAATTTGTATATATTGGAATTAATAAAAGGTATTCCCAAAGTAGTAAAAAAGAGAGGGTTTTATTTAGATTGATGGAAGAGAGAGAGGTGTGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAACTTCTTCATGAACAACAAGTTGTTCCTACACCTTCTTCCATTTGGGAAGATGATTTCAGAGCTTTTTTCGACCTCACCCACGAAGAAACCCCCCCGCCGCCGCTGCATCACCCGGACTACTACCATTTCCAGAACCACGTCAATGACGTTATGGAAAACAACAACAAGGTTTCTAATTTGAATTTAAATCTTAACTATGAAGAGGTTTTGGAAGCATGGTCCGACCGTGGATCTCTTTGGGCCGCTGCATCCTCTTCCCATTCCAACGACTCAACTCACACCCCCTATATGGGAGAGGTTCCAATAATAAGAATGGAGGAAGAAAGAAGAAGAAGGGTGAAGAGATATAAGGAAAAGCGTCAAGCAAGAATATTCTGTAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCTGACAGAAGGCCTAGAATTAAGGTCTTTCTTTTTTCTTTTATTTCTTTTACTATACTATACTTTACTTATGATCTTATTCATAATTATCATTTCATTTTACACCCCCTAGCTACCTTATTATATTGAAAACCTTTTTCAAAAGCTCATACTCATACGAAGAAAATAGGTACACCCATGGCCATGTATTAACTTCTTTTAAATATATATATATACACTTTAATTTTTAGTCAACTTCTAAAAATAAAAACTACTTTTGAAAATTCTATCTTTTTTAGTTTTCAAAATTAAGCTTGGTTTCTTCAAATTTCAAACATGGGTGGAGTACTAGAAAACCCTAAAGGATGAAGACCCCTTTTAAGTAATCATTTTGGTCATGGTTTATGAAAAATGTGATTTGAATATTCCATCGATGATGTGAAGAAATTAAAGTGTTTATTTGATTTGACACAGGGGCGTTTTGTGAAGACAGATTGTTGAATGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGTTGAAAAATATCTCAACACAACAATAAAAGTATCTCTCCAACTTTTCCTTTTAACATTATTCTTCATGAAAATATCTAAAATTTGTATGCACATAGATATAATATATCTGTGTGATGCTCAGAAGCTTTGTGTGTGGGACTGTGGGGTTTCTAATTTCAATAATGGTGGGTCTGATCTCCAGAGGGACCCCAACTTAATTGTCCATTTATTGAATTGATACACACCCTCTCAGCTTCACCATACCTTTAGCTACATTTGTTACTCATCTCATCATCTTCTTCATCATCATCATCACTCATCACTCTCTCAACAAACCTTAAATTATATATTGTAACAACAGAACTTCCCCATCACCTTTTCAAGTGTGAGTGTGTGTTTGGACACCACAGACTTAATTAAGGAGCACTCTGATGGAAATGTTTCATATTTTCATGATCCACTTTGGTGTACCCCAACAACATGATCATTAATTACATATTGTTTGAATTGTCAAAACATATATACTTCCTTTTTAAGATTTAAAGGCCAAATTTATCATCCGTGGTCTCCAAATTCATCTAATAAAATCTCAAAACTTTTAATTGTAAATCCATTATTGAATAAAGATG

Coding sequence (CDS)

ATGGAAGAGAGAGAGGTGTGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAACTTCTTCATGAACAACAAGTTGTTCCTACACCTTCTTCCATTTGGGAAGATGATTTCAGAGCTTTTTTCGACCTCACCCACGAAGAAACCCCCCCGCCGCCGCTGCATCACCCGGACTACTACCATTTCCAGAACCACGTCAATGACGTTATGGAAAACAACAACAAGGTTTCTAATTTGAATTTAAATCTTAACTATGAAGAGGTTTTGGAAGCATGGTCCGACCGTGGATCTCTTTGGGCCGCTGCATCCTCTTCCCATTCCAACGACTCAACTCACACCCCCTATATGGGAGAGGTTCCAATAATAAGAATGGAGGAAGAAAGAAGAAGAAGGGTGAAGAGATATAAGGAAAAGCGTCAAGCAAGAATATTCTGTAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCTGACAGAAGGCCTAGAATTAAGGTCTTTCTTTTTTCTTTTATTTCTTTTACTATACTATACTTTACTTATGATCTTATTCATAATTATCATTTCATTTTACACCCCCTAGCTACCTTATTATATTGA

Protein sequence

MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYHFQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIKVFLFSFISFTILYFTYDLIHNYHFILHPLATLLY*

Homology

[Close]

BLAST of CsGy1G023750 vs. ExPASy Swiss-Prot
Match: Q9LU68 (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-09
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 65  VNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRME 124
           + D  E + K +   L L+Y+ VLEAWSD+ S +       S        + ++ +    
Sbjct: 322 LEDTEETSLKRTGPLLKLDYDGVLEAWSDKTSPFPDEIQG-SEAVDVNARLAQIDLFGDS 381

Query: 125 EERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 164
             R   V RYKEKR+ R+F KKIRYQVRKLNAD+RPR+K
Sbjct: 382 GMREASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMK 419

[Close]

BLAST of CsGy1G023750 vs. ExPASy Swiss-Prot
Match: Q9C9A9 (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 67  DVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHS--NDSTHTPYM--------- 126
           +   + ++ ++L L L+Y  V+ AW + GS W            +T  P++         
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLGGNTCLPHVVGGYEKLMS 325

Query: 127 GEVPIIRM--------EEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 164
            +  + R         + ER  RV RYKEKR+ R+F KKIRY+VRKLNA++RPRIK
Sbjct: 326 SDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIK 381

[Close]

BLAST of CsGy1G023750 vs. ExPASy Swiss-Prot
Match: Q9M9B3 (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 7.4e-08
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 65  VNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRME 124
           + D  ENN +       LNYE V+ AW  + S         +N S+       +   R+ 
Sbjct: 218 IEDCYENNAR-----HRLNYENVIAAWDKQES----PRDVKNNTSSFQLVPPGIEEKRVR 277

Query: 125 EERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 164
            ER  RV RY++KR+ R+F KKIRY+VRK+NAD+RPR+K
Sbjct: 278 SEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMK 307

[Close]

BLAST of CsGy1G023750 vs. ExPASy Swiss-Prot
Match: Q8LG76 (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-07
Identity = 44/122 (36.07%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 63  NHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSN-----DSTHTPYMGE 122
           N ++  ++   K   L L L+YE V+  W  +G  W A   S  +       THT  MGE
Sbjct: 274 NEMSGGIKEEKKEKALMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPTHT--MGE 333

Query: 123 VPIIRMEEE----------------RRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPR 164
                                    R  RV RY+EKR+ R+F KKIRY+VRKLNA++RPR
Sbjct: 334 SGAEAHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPR 393

[Close]

BLAST of CsGy1G023750 vs. ExPASy Swiss-Prot
Match: Q8RWD0 (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 59/192 (30.73%), Postives = 86/192 (44.79%), Query Frame = 0


Query: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPS-SIWEDD---------FRAFFDLTHEETPP 60
           MEE  +  S + K  K E+  E + +   S  I++DD         F   FD        
Sbjct: 207 MEELGLSNSEMFKIEKDEIEEEVEEIKAMSMDIFDDDRKDVDGTVPFELSFDYESSHKTS 266

Query: 61  PPLHHPDYYHFQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASS------- 120
                 +       V  V E  +K + L L LNY+ V+  W  +G  W++          
Sbjct: 267 EEEVMKNVESSGECVVKVKEEEHK-NVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDI 326

Query: 121 ---------SHSNDSTH-TPYMGE-VPIIRM-EEERRRRVKRYKEKRQARIFCKKIRYQV 164
                     +  +STH   Y+G  +P     +  R  RV RY+EKR+ R+F KKIRY+V
Sbjct: 327 SGWPAFSMVENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEV 386

[Close]

BLAST of CsGy1G023750 vs. NCBI nr
Match: KGN65847.1 (hypothetical protein Csa_023240 [Cucumis sativus])

HSP 1 Score: 335 bits (860), Expect = 1.76e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH 60
           MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH
Sbjct: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH 60

Query: 61  FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPI 120
           FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPI
Sbjct: 61  FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPI 120

Query: 121 IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163
           IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK
Sbjct: 121 IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163

[Close]

BLAST of CsGy1G023750 vs. NCBI nr
Match: XP_038893945.1 (zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida])

HSP 1 Score: 216 bits (551), Expect = 2.49e-68
Identity = 124/170 (72.94%), Postives = 136/170 (80.00%), Query Frame = 0


Query: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPP-PPLHHPDYY 60
           MEERE+ FSWLVKSPKKE   EQQV   P+SIWEDDF+AFF+LT EE PP PPL  PDY 
Sbjct: 1   MEEREMGFSWLVKSPKKE--DEQQV---PNSIWEDDFKAFFELTDEENPPRPPLQQPDY- 60

Query: 61  HFQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVP 120
           HF  H    MEN NK+S LNLNLNYEEVLEAWSDRGSLWAAA+SS ++D+TH PYMGEVP
Sbjct: 61  HF--HDGAFMENKNKIS-LNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPYMGEVP 120

Query: 121 IIRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIKVFLFSF 169
             RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIK F   F
Sbjct: 121 --RMEEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKNFFCGF 159

[Close]

BLAST of CsGy1G023750 vs. NCBI nr
Match: XP_038893946.1 (zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida])

HSP 1 Score: 214 bits (546), Expect = 8.18e-68
Identity = 122/164 (74.39%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPP-PPLHHPDYY 60
           MEERE+ FSWLVKSPKKE   EQQV   P+SIWEDDF+AFF+LT EE PP PPL  PDY 
Sbjct: 1   MEEREMGFSWLVKSPKKE--DEQQV---PNSIWEDDFKAFFELTDEENPPRPPLQQPDY- 60

Query: 61  HFQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVP 120
           HF  H    MEN NK+S LNLNLNYEEVLEAWSDRGSLWAAA+SS ++D+TH PYMGEVP
Sbjct: 61  HF--HDGAFMENKNKIS-LNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPYMGEVP 120

Query: 121 IIRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163
             RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIK
Sbjct: 121 --RMEEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIK 153

[Close]

BLAST of CsGy1G023750 vs. NCBI nr
Match: XP_038893944.1 (zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida])

HSP 1 Score: 214 bits (546), Expect = 5.24e-67
Identity = 122/164 (74.39%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPP-PPLHHPDYY 60
           MEERE+ FSWLVKSPKKE   EQQV   P+SIWEDDF+AFF+LT EE PP PPL  PDY 
Sbjct: 1   MEEREMGFSWLVKSPKKE--DEQQV---PNSIWEDDFKAFFELTDEENPPRPPLQQPDY- 60

Query: 61  HFQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVP 120
           HF  H    MEN NK+S LNLNLNYEEVLEAWSDRGSLWAAA+SS ++D+TH PYMGEVP
Sbjct: 61  HF--HDGAFMENKNKIS-LNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPYMGEVP 120

Query: 121 IIRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163
             RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIK
Sbjct: 121 --RMEEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIK 153

[Close]

BLAST of CsGy1G023750 vs. NCBI nr
Match: XP_023520167.1 (zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140 bits (353), Expect = 5.24e-38
Identity = 100/202 (49.50%), Postives = 114/202 (56.44%), Query Frame = 0


Query: 8   FSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPP------------PPLHH 67
           +S L+KSPKKE   E+Q VP  +SIW DDF+AFF+L++EE  P             PL+ 
Sbjct: 3   YSSLLKSPKKEGAEEEQEVP--NSIW-DDFKAFFELSNEEKLPLQQQENFSIVNGGPLNW 62

Query: 68  PDYYHFQNHV----------------------------------NDVMENNNKVSNLNLN 127
               H  NH                                   + VME+  K S LNLN
Sbjct: 63  DLMDHHSNHQFSLSETKTNHSGHGDGVEAEVFSRVVPKACSFDGDGVMESKKKAS-LNLN 122

Query: 128 LNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRMEEERRRRVKRYKEKRQAR 163
           LNYEEV EAWS RGSLWAA  SS SN  TH  YMGEVP  RMEEER RRV RY+EKR  R
Sbjct: 123 LNYEEVSEAWSGRGSLWAAGGSSPSNP-THNVYMGEVP--RMEEERTRRVLRYREKRLTR 182

[Close]

BLAST of CsGy1G023750 vs. ExPASy TrEMBL
Match: A0A0A0LYC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533540 PE=4 SV=1)

HSP 1 Score: 335 bits (860), Expect = 8.51e-116
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH 60
           MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH
Sbjct: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH 60

Query: 61  FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPI 120
           FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPI
Sbjct: 61  FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPI 120

Query: 121 IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163
           IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK
Sbjct: 121 IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163

[Close]

BLAST of CsGy1G023750 vs. ExPASy TrEMBL
Match: A0A6J1HJ00 (zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita moschata OX=3662 GN=LOC111464884 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 1.71e-36
Identity = 98/204 (48.04%), Postives = 113/204 (55.39%), Query Frame = 0


Query: 8   FSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPP------------PPLHH 67
           +S L+KSPKKE   E+Q VP  +SIW DDF+AFF+L++EE  P             PL+ 
Sbjct: 3   YSSLLKSPKKEGEEEEQEVP--NSIW-DDFKAFFELSNEEKLPLQQQENFSIVNGGPLNW 62

Query: 68  PDYYHFQNHV------------------------------------NDVMENNNKVSNLN 127
               H  NH                                     + VM++  K S LN
Sbjct: 63  DLMDHHSNHQFSLSETKANHGGHGYGIEAEAEAFSRVVPKACSFDGDGVMKSKKKAS-LN 122

Query: 128 LNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRMEEERRRRVKRYKEKRQ 163
           LNLNYEEV EAWS RGSLWA   SS SN  TH  YMGEVP  RMEEER RRV RY+EKR 
Sbjct: 123 LNLNYEEVSEAWSGRGSLWAGGGSSPSNP-THNVYMGEVP--RMEEERTRRVLRYREKRL 182

[Close]

BLAST of CsGy1G023750 vs. ExPASy TrEMBL
Match: A0A6J1I4F9 (zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita maxima OX=3661 GN=LOC111469554 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 1.33e-32
Identity = 95/206 (46.12%), Postives = 111/206 (53.88%), Query Frame = 0


Query: 8   FSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYY-------- 67
           +S L+K  KKE   EQ+V   P+SI  DDF+AFF+L++EE    PL   + +        
Sbjct: 3   YSSLLKGLKKEEEEEQEV---PNSI-RDDFKAFFELSNEEK--LPLQQQENFSIVNGGSL 62

Query: 68  ------HFQNHV------------------------------------NDVMENNNKVSN 127
                 H  NH                                     + VM++  K S 
Sbjct: 63  NWDLMDHHSNHQFSLSETKTNHGGHGDGVEAEAEVFSRVVPKACSFDGDGVMKSKKKAS- 122

Query: 128 LNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRMEEERRRRVKRYKEK 163
           LNLNLNYEEV EAWS RGSLWAA  SS SN  TH  YMGEVP  RMEEER RRV RY+EK
Sbjct: 123 LNLNLNYEEVSEAWSGRGSLWAAGGSSPSNP-THNVYMGEVP--RMEEERTRRVLRYREK 182

[Close]

BLAST of CsGy1G023750 vs. ExPASy TrEMBL
Match: A0A6J1DMX8 (zinc finger protein CONSTANS-LIKE 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022043 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 4.63e-31
Identity = 87/197 (44.16%), Postives = 107/197 (54.31%), Query Frame = 0


Query: 8   FSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPD---------- 67
           +SW +KSPK+E   EQ+V   P+   + DF AF +   ++ PPPP    D          
Sbjct: 3   YSWFLKSPKEE---EQEV---PNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGGPPD 62

Query: 68  ------YYHFQ----------------------NHVNDVMENNNKVS---NLNLNLNYEE 127
                 Y +F                         V+D  +   K     +L LNLNYEE
Sbjct: 63  WGLNFDYEYFPVPVLSQTNIVGANEEAAAAAAFGRVSDDGDGRKKEEEEISLKLNLNYEE 122

Query: 128 VLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRMEEERRRRVKRYKEKRQARIFCKK 163
           VLEAWS RGSLWAAA  S  ++ T+  YMGEVP  R+EEERRRRV RYKEKR  R+F  K
Sbjct: 123 VLEAWSGRGSLWAAADDSSLSNLTNAAYMGEVP--RIEEERRRRVLRYKEKRHNRLFSNK 182

[Close]

BLAST of CsGy1G023750 vs. ExPASy TrEMBL
Match: A0A7J6DV54 (CCT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_024479 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 1.17e-28
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 70  ENNNKVS-NLNLNLNYEEVLEAWSDRGSLWA---AASSSHSNDSTHTPYMGEVPIIRMEE 129
           +NNNK S NLNL+LNY+EVLEAWSDRGSLWA   + S + SN S +  YMGEVP++ MEE
Sbjct: 179 KNNNKGSLNLNLSLNYQEVLEAWSDRGSLWADEYSLSMASSNGSNN--YMGEVPVL-MEE 238

Query: 130 ERRRR---VKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 163
           E+RRR   V RYKEKRQ R+F KKIRYQVRKLNAD+RPR+K
Sbjct: 239 EKRRREASVLRYKEKRQTRLFSKKIRYQVRKLNADKRPRLK 276

[Close]

BLAST of CsGy1G023750 vs. TAIR 10
Match: AT1G07050.1 (CCT motif family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-16
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 66  NDVMENNNKVSNLNLNLNYEEVLEAWSD-RGSLWAAASSSHSNDSTHTPYMGEVPIIRME 125
           N   +  +K   L LNLN++EV++AWSD +  LW   S+       ++ Y GEVP+I  +
Sbjct: 92  NKPTDYEDKDLGLKLNLNHQEVIDAWSDHQKPLWTDTST-----LDNSVYRGEVPVIEEK 151

Query: 126 EERRRR--VKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 164
              RR   V RYKEKRQ+R+F KKIRYQVRKLNAD+RPR K
Sbjct: 152 RNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFK 187

[Close]

BLAST of CsGy1G023750 vs. TAIR 10
Match: AT5G14370.1 (CCT motif family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-12
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 70  ENNNKVSNLNLNLNYEEVLEAWSDRGSLWA-----------AASSSHSNDSTHTPYMGEV 129
           + N+   +L L L+YE+++EAWSD+G+L+             AS+   ND      +  V
Sbjct: 221 DGNDGRPSLALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASADGFNDGGEAGNLWAV 280

Query: 130 PIIRMEE-----ERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 164
           P +   E      R   + RYKEKRQ R+F K+IRYQVRKLNA++RPR+K
Sbjct: 281 PEMETTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVK 330

[Close]

BLAST of CsGy1G023750 vs. TAIR 10
Match: AT4G25990.2 (CCT motif family protein )

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-11
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 66  NDVMENNNK----VSNLNLNLNYEEVLEAWSDRGSLWA-AASSSHSNDSTHTPYMGEVPI 125
           ++V ++N K    VS L L L+Y+ VLEAWS + S ++     S ++       +GE+ +
Sbjct: 276 SEVTDSNPKLEQRVSPL-LKLDYDGVLEAWSGKESPFSDEILGSDADGVDFHVRLGEIDL 335

Query: 126 IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIKV 165
                 R   V RYKEKR+ R+F KKIRYQVRKLNAD+RPR+KV
Sbjct: 336 FGESGMREASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKV 378

[Close]

BLAST of CsGy1G023750 vs. TAIR 10
Match: AT5G57180.1 (chloroplast import apparatus 2 )

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 65  VNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPYMGEVPIIRME 124
           + D  E + K +   L L+Y+ VLEAWSD+ S +       S        + ++ +    
Sbjct: 322 LEDTEETSLKRTGPLLKLDYDGVLEAWSDKTSPFPDEIQG-SEAVDVNARLAQIDLFGDS 381

Query: 125 EERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIKV 165
             R   V RYKEKR+ R+F KKIRYQVRKLNAD+RPR+KV
Sbjct: 382 GMREASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKV 420

[Close]

BLAST of CsGy1G023750 vs. TAIR 10
Match: AT4G25990.1 (CCT motif family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 66  NDVMENNNK----VSNLNLNLNYEEVLEAWSDRGSLWA-AASSSHSNDSTHTPYMGEVPI 125
           ++V ++N K    VS L L L+Y+ VLEAWS + S ++     S ++       +GE+ +
Sbjct: 276 SEVTDSNPKLEQRVSPL-LKLDYDGVLEAWSGKESPFSDEILGSDADGVDFHVRLGEIDL 335

Query: 126 IRMEEERRRRVKRYKEKRQARIFCKKIRYQVRKLNADRRPRIK 164
                 R   V RYKEKR+ R+F KKIRYQVRKLNAD+RPR+K
Sbjct: 336 FGESGMREASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMK 377

The following BLAST results are available for this feature:

BLAST of CsGy1G023750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU68	5.1e-09	42.42	Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 P...	[more]
Q9C9A9	5.7e-08	35.34	Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2...	[more]
Q9M9B3	7.4e-08	40.40	Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1...	[more]
Q8LG76	2.2e-07	36.07	Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2...	[more]
Q8RWD0	6.3e-07	30.73	Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE...	[more]

BLAST of CsGy1G023750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65847.1	1.76e-115	100.00	hypothetical protein Csa_023240 [Cucumis sativus]	[more]
XP_038893945.1	2.49e-68	72.94	zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida]	[more]
XP_038893946.1	8.18e-68	74.39	zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida]	[more]
XP_038893944.1	5.24e-67	74.39	zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida]	[more]
XP_023520167.1	5.24e-38	49.50	zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G023750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC0	8.51e-116	100.00	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533540 PE=4 SV...	[more]
A0A6J1HJ00	1.71e-36	48.04	zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita moschata OX=3662 GN=LOC11146488...	[more]
A0A6J1I4F9	1.33e-32	46.12	zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita maxima OX=3661 GN=LOC111469554 ...	[more]
A0A6J1DMX8	4.63e-31	44.16	zinc finger protein CONSTANS-LIKE 6 isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A7J6DV54	1.17e-28	69.31	CCT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_024479 PE=4 SV...	[more]

BLAST of CsGy1G023750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07050.1	4.4e-16	50.50	CCT motif family protein	[more]
AT5G14370.1	1.3e-12	40.91	CCT motif family protein	[more]
AT4G25990.2	9.6e-11	45.19	CCT motif family protein	[more]
AT5G57180.1	1.3e-10	43.00	chloroplast import apparatus 2	[more]
AT4G25990.1	2.8e-10	44.66	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 127..163 e-value: 3.5E-11 score: 43.0
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 127..169 score: 12.143572
None	No IPR available	PANTHER	PTHR31874:SF41	CCT MOTIF FAMILY PROTEIN	coord: 65..166
None	No IPR available	PANTHER	PTHR31874	CCT MOTIF FAMILY PROTEIN, EXPRESSED	coord: 65..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023750.2	CsGy1G023750.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding