CsGy1G023480 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G023480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein PSY1-like
Location	Gy14Chr1: 22293518 .. 22295193 (-)
RNA-Seq Expression	CsGy1G023480
Synteny	CsGy1G023480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCACTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTCTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCAAGCAACAAGAGTAAGAACAAAACCCTTTCTAGTTCTTCCTTCTTCACCTTTATTCATTTCTCATCGTTTAATTTAAATTTGTCATAACCTTTTTATTTAATGTTTTACGATTTGATAGTTTAACATAATAGTATTAAAGAACTCGATATCTATATCAATTTTCACGAAGATAAAACTTTTGCAATGTCGTTCTTGGTTTATATAATAATGGTCTAAGTTGTCAAATTTTTTGTGCCAATCTGTACAAATGATAAAAAATGTCTTACCTCTCAATTTAATTTTTACAGGGAAAATAATATTTTGGCTCTTTTGTATTCCAAGTTTCCTGAAGTGTTTTCAATCGTCTAAATTTACTCTTTTTATATTACTTTCAATATATTTTAAATTTAATCATTCAAAAATTAATAATTTTCCAGAGTGTTATCAAATAATAATAAATTTTGTAAATAAATAAATAAATTATCATATATACGTGAGTTCAAAAAATTTATAAAAGAAATCTAAATAGAGATAATATTTTTATATTTGGAAAAATGTGGTTATAATCAACAAAAGATACTGTTATTTTAAAGATTTACAGATGGTATTAATAAAAAATATTCCAAAGTACATAAAATAAAATTCAAAATTAAATTAAAGTAATAGGTATTTTAGACGATTATATTAATTTTAACATGTAGTCAAAATAGAAGGTTTTGAGTAAGTGTCATATATCCTCTTTATATATATATATATATATATAATTTAACCCTAAGGCCTTATGTTTAATTTTTCAAGCTTTACTGATTTAACCCTAAGGCCTTATGTTTAATTTTTCAAGCTTTACAAATGATCAAACTTATTTGACGATGGGTTTATTGGTGTAGTTTAGTACATAGTTAACTATATAGTTTTATGGTTAATTAAAAAATTTTATATACGTAGGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGTATGTTTAACCAAAGGTTCTTCAACGGTTTCGAATCTCTCACTCACTCCATACAAATATAGATTGTTACTCAATGGATAAAACTAATTGGTATATCGTTGAATGCGTGAGATAGAAATTATTATTTATTTGTTTTTTTAATAACTTAGATCCCAAGTCTCTAACTAAATTATTATTATTTAGGTTATTAGTGTTTTTATCTATTCAAATAACATAACAAGTACGAGCATGGTGAAGTTTCATCCATTCTCATAAACATAATTAAGTATGAGAGTTTAGCTCAACATTGAGGGTTATATTTCATATATACTTACCATTGTAGCAAACCCACCTAATAAAAATTGTTGTTATAATTCATCATTATTTGTTGATTTTTGCAGGGAACAACAAGGAATTGGATGGTTAATGAGAATTAGAGAAGATAATGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGATGTGTGTTGAGATAGTTAATACAAG

mRNA sequence

TTTTCACTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTCTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCAAGCAACAAGAGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGGAACAACAAGGAATTGGATGGTTAATGAGAATTAGAGAAGATAATGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGATGTGTGTTGAGATAGTTAATACAAG

Coding sequence (CDS)

ATGGCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTCTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCAAGCAACAAGAGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGGAACAACAAGGAATTGGATGGTTAA

Protein sequence

MASSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPHHPLSVNKGNNKELDG*

Homology

[Close]

BLAST of CsGy1G023480 vs. NCBI nr
Match: KGN65819.1 (hypothetical protein Csa_023229 [Cucumis sativus])

HSP 1 Score: 162 bits (409), Expect = 5.37e-50
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 2  ASSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 61
          +SSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN
Sbjct: 3  SSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 62

Query: 62 HRHDPHHPLSVNKGNNKELDG 82
          HRHDPHHPLSVNKGNNKELDG
Sbjct: 63 HRHDPHHPLSVNKGNNKELDG 83

[Close]

BLAST of CsGy1G023480 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 144 bits (364), Expect = 3.84e-43
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARA 60
          MASSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDARA
Sbjct: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60

Query: 61 NHRHDPHHPLSVNKGNNKELDG 82
          NHRHDPHHPL+VNKGN KELDG
Sbjct: 61 NHRHDPHHPLTVNKGNKKELDG 82

[Close]

BLAST of CsGy1G023480 vs. NCBI nr
Match: KAG6607316.1 (hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 3.98e-19
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 9  RLSFYFSFLILLLLATAMVA-SAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPH 68
          R S YFS L  LL   A+VA S AR+ PA P++S +R+D EMIGL+DYGDARANHRH+PH
Sbjct: 4  RSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTERHD-EMIGLRDYGDARANHRHEPH 63

Query: 69 HPLSVNKGNNKELD 81
          HPL V +G  KELD
Sbjct: 64 HPLGV-EGYKKELD 75

[Close]

BLAST of CsGy1G023480 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.62e-18
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 11 SFYFSFLILLLLATAMVAS-AARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPHHP 70
          S YFS L  LL   A+VA+  AR+ PA P+SS +R+D EMIGL+DYGDARANHRH+PHHP
Sbjct: 6  SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHD-EMIGLRDYGDARANHRHEPHHP 65

Query: 71 LSVNKGNNKELD 81
          L V +G  KELD
Sbjct: 66 LGV-EGYKKELD 75

[Close]

BLAST of CsGy1G023480 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.66e-18
Identity = 52/101 (51.49%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 9   RLSFYFSFLILLLLATAMVASAARHAPAIP---------VSSNKRNDK------------ 68
           RLS YFS LILLL   ++V+SAARHAPA           V  ++R  K            
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHHR 63

Query: 69  ------EMIGLQDYGDARANHRHDPHHPLSVNKGNNKELDG 82
                 EMIGL DYGD  ANH+HDPHHPL+V KGNNKELDG
Sbjct: 64  LLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

[Close]

BLAST of CsGy1G023480 vs. ExPASy TrEMBL
Match: A0A0A0LXN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 2.60e-50
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 2  ASSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 61
          +SSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN
Sbjct: 3  SSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 62

Query: 62 HRHDPHHPLSVNKGNNKELDG 82
          HRHDPHHPLSVNKGNNKELDG
Sbjct: 63 HRHDPHHPLSVNKGNNKELDG 83

[Close]

BLAST of CsGy1G023480 vs. ExPASy TrEMBL
Match: A0A1S3C5B4 (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.86e-43
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARA 60
          MASSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDARA
Sbjct: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60

Query: 61 NHRHDPHHPLSVNKGNNKELDG 82
          NHRHDPHHPL+VNKGN KELDG
Sbjct: 61 NHRHDPHHPLTVNKGNKKELDG 82

[Close]

BLAST of CsGy1G023480 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.82e-19
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 11 SFYFSFLILLLLATAMVAS-AARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPHHP 70
          S YFS L  LL   A+VA+  AR+ PA P+SS +R+D EMIGL+DYGDARANHRH+PHHP
Sbjct: 6  SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHD-EMIGLRDYGDARANHRHEPHHP 65

Query: 71 LSVNKGNNKELD 81
          L V +G  KELD
Sbjct: 66 LGV-EGYKKELD 75

[Close]

BLAST of CsGy1G023480 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.03e-19
Identity = 52/101 (51.49%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 9   RLSFYFSFLILLLLATAMVASAARHAPAIP---------VSSNKRNDK------------ 68
           RLS YFS LILLL   ++V+SAARHAPA           V  ++R  K            
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHHR 63

Query: 69  ------EMIGLQDYGDARANHRHDPHHPLSVNKGNNKELDG 82
                 EMIGL DYGD  ANH+HDPHHPL+V KGNNKELDG
Sbjct: 64  LLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

The following BLAST results are available for this feature:

BLAST of CsGy1G023480 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G023480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65819.1	5.37e-50	98.77	hypothetical protein Csa_023229 [Cucumis sativus]	[more]
XP_008457363.1	3.84e-43	86.59	PREDICTED: protein PSY1-like [Cucumis melo]	[more]
KAG6607316.1	3.98e-19	63.51	hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998316.1	1.62e-18	63.89	uncharacterized protein LOC111492989 [Cucurbita maxima]	[more]
XP_022150920.1	1.66e-18	51.49	uncharacterized protein LOC111018956 [Momordica charantia]	[more]

BLAST of CsGy1G023480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXN0	2.60e-50	98.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1	[more]
A0A1S3C5B4	1.86e-43	86.59	protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1	[more]
A0A6J1K9X5	7.82e-19	63.89	uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989...	[more]
A0A6J1D9T4	8.03e-19	51.49	uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of CsGy1G023480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023480.2	CsGy1G023480.2	mRNA