CsGy1G023460 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G023460
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionProtein PSY3
LocationGy14Chr1: 22287724 .. 22288267 (-)
RNA-Seq ExpressionCsGy1G023460
SyntenyCsGy1G023460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTCTTCATCTCTCACTACCTAAATTTATATATATATTGATTTCTTTATTTTTTAATCTCCATTACCAATCATTCAAACCAAACAAAAAACAACTAACATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGGTACGCAAAATTTGTTAAATTATAAATCTATTGTTGAATAGTCTAGATTTGCATAATTGTATAGAAAACTAAAATGTAATATCATATCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAAAGAAATTTTGGTTGTTAGAGGAGGAAGAAAGTATCAGTAAGGAAGGAAGCTTAAAATGAGAAATGATGATGTGCATGAACCAATAATAGCACTATATAAATGTTATATTATCGAATTATATAATTCCCTTTATGTGTGTTGAGA

mRNA sequence

AGTTTCTTCATCTCTCACTACCTAAATTTATATATATATTGATTTCTTTATTTTTTAATCTCCATTACCAATCATTCAAACCAAACAAAAAACAACTAACATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAAAGAAATTTTGGTTGTTAGAGGAGGAAGAAAGTATCAGTAAGGAAGGAAGCTTAAAATGAGAAATGATGATGTGCATGAACCAATAATAGCACTATATAAATGTTATATTATCGAATTATATAATTCCCTTTATGTGTGTTGAGA

Coding sequence (CDS)

ATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAA

Protein sequence

MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVVKDRHIKKNP*
Homology
BLAST of CsGy1G023460 vs. NCBI nr
Match: KGN65817.1 (hypothetical protein Csa_023275 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 1.26e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60
          MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60

Query: 61 KDRHIKKNP 69
          KDRHIKKNP
Sbjct: 61 KDRHIKKNP 69

BLAST of CsGy1G023460 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.74e-25
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSFE 60
          MDYSKA LALFLL+SFVLVTSARIIPHSENQEAAYMI DYP+P    RH P PP    FE
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFE 60

Query: 61 VNVVKDRHIKKN 68
          V+VVK   IKKN
Sbjct: 61 VSVVKGHRIKKN 72

BLAST of CsGy1G023460 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 8.52e-24
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MDYSKAHL-ALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSF 60
          M+Y KA L ALFLL+SF LVTSARI+PHSENQEAAYMI DYP+P    RH P PP P  F
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQF 60

Query: 61 EVNVVKDRHIKKNP 69
          E++VVKD  IKKNP
Sbjct: 61 EISVVKDHDIKKNP 74

BLAST of CsGy1G023460 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.38e-23
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSFE 60
          MDYSK  LAL LL+SF +VT ARIIPHSENQE AY I DYP+P    RH P PP P  FE
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VNVVKDRHIKKNP 69
          V+VVK +HI+KNP
Sbjct: 61 VSVVKVQHIRKNP 73

BLAST of CsGy1G023460 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.47e-23
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHP-PPPSPPSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P    RH P PPP   SF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNVVKDRHIKKNP 69
          EVN V+ RHI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

BLAST of CsGy1G023460 vs. ExPASy TrEMBL
Match: A0A0A0LY98 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 6.11e-43
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60
          MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60

Query: 61 KDRHIKKNP 69
          KDRHIKKNP
Sbjct: 61 KDRHIKKNP 69

BLAST of CsGy1G023460 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.44e-26
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSFE 60
          MDYSKA LALFLL+SFVLVTSARIIPHSENQEAAYMI DYP+P    RH P PP    FE
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFE 60

Query: 61 VNVVKDRHIKKN 68
          V+VVK   IKKN
Sbjct: 61 VSVVKGHRIKKN 72

BLAST of CsGy1G023460 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.13e-24
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MDYSKAHL-ALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSF 60
          M+Y KA L ALFLL+SF LVTSARI+PHSENQEAAYMI DYP+P    RH P PP P  F
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQF 60

Query: 61 EVNVVKDRHIKKNP 69
          E++VVKD  IKKNP
Sbjct: 61 EISVVKDHDIKKNP 74

BLAST of CsGy1G023460 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.33e-24
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHP-PPPSPPSF 60
          MDYSKA L+L LL+SFVLVTSARIIPHSENQE AYMI DYP+P    RH+P PPP    F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNVVKDRHIKKNP 69
          E++VVKD  I KNP
Sbjct: 61 EISVVKDGDITKNP 74

BLAST of CsGy1G023460 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.15e-23
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSFE 60
          MDYSK  LAL LL+SF +VT ARIIPHSENQE AY I DYP+P    RH P PP P  FE
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VNVVKDRHIKKNP 69
          V+VVK +HI+KNP
Sbjct: 61 VSVVKVQHIRKNP 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN65817.11.26e-42100.00hypothetical protein Csa_023275 [Cucumis sativus][more]
KAA0031836.11.74e-2575.00Protein PSY3 [Cucumis melo var. makuwa][more]
KAA0031838.18.52e-2470.27hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa][more]
KAA0031837.12.38e-2367.12hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730... [more]
KGN65816.13.47e-2368.92hypothetical protein Csa_023196 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LY986.11e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1[more]
A0A5A7SPC68.44e-2675.00Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P... [more]
A0A5A7SMH74.13e-2470.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LV678.33e-2470.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1[more]
A0A5D3BBU71.15e-2367.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G023460.2CsGy1G023460.2mRNA