CsGy1G022510 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G022510
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type E3 ubiquitin transferase
Location	Gy14Chr1: 21521538 .. 21521985 (+)
RNA-Seq Expression	CsGy1G022510
Synteny	CsGy1G022510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAAAGATGAAGACGTGTGGTCATGTCATAAAGACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCGGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

mRNA sequence

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCGGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

Coding sequence (CDS)

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCGGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

Protein sequence

MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFINRI*

Homology

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BLAST of CsGy1G022510 vs. NCBI nr
Match: KAE8653243.1 (hypothetical protein Csa_019947 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 7.82e-80
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120
           IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDR GIAMASSSSLPTPFI
Sbjct: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRSGIAMASSSSLPTPFI 120

Query: 121 NRI 123
           NRI
Sbjct: 121 NRI 123

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_004153928.3 (RING-H2 finger protein ATL67 [Cucumis sativus])

HSP 1 Score: 188 bits (477), Expect = 9.87e-59
Identity = 102/149 (68.46%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVL+T+SML LIVLFLFI ILCTKRSAK+DGEE  +NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVE  EQE                           C DRWFKV+GHCPI R
Sbjct: 61  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TFVCVVVVDRGGIAMASSSSLPTPFINRI 123
           T VC+VV+DRGG AMASSSSLPTPFINRI
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_011659858.1 (E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 187 bits (476), Expect = 1.40e-58
Identity = 106/149 (71.14%), Postives = 108/149 (72.48%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVLLTISML LIVLFLFI ILCTKRSAK D EEL ENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY  VEG EQE                           C DRWFKV+GHCPI R
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TFVCVVVVDRGGIAMASSSSLPTPFINRI 123
           T VCVVV+DRGG AMASSSSLPTPFINRI
Sbjct: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_011648512.2 (RING-H2 finger protein ATL79 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 3.29e-57
Identity = 102/149 (68.46%), Postives = 108/149 (72.48%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVL+T+SML LIVLFLFI ILCTKRSAK DGEE  ENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSENLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKV+GHCPI R
Sbjct: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TFVCVVVVDRGGIAMASSSSLPTPFINRI 123
           T VC+VV+DRGG AMASSSSL TPFIN+I
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLLTPFINQI 149

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_011659772.1 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 173 bits (438), Expect = 8.54e-53
Identity = 99/149 (66.44%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+ ML LIVLF FI+ILC KRSAK DGEEL ENLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKVDGHCPI R
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 120

Query: 121 TFVCVVVVDRGGIAMASSSSLPTPFINRI 123
           T VCVVVVD GG AMASSSSLPTPFIN+I
Sbjct: 121 TSVCVVVVDHGGNAMASSSSLPTPFINQI 149

[Close]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL
Match: A0A0A0M0G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G513470 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 4.60e-81
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120
           IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI
Sbjct: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120

Query: 121 NRI 123
           NRI
Sbjct: 121 NRI 123

[Close]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL
Match: A0A0A0K790 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 5.68e-53
Identity = 99/149 (66.44%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+ ML LIVLF FI+ILC KRSAK DGEEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY GVEG EQE                           C DRWFKVDGHCPI R
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

Query: 121 TFVCVVVVDRGGIAMASSSSLPTPFINRI 123
           T VCVVVVD GG AMASSSSLPTPFIN+I
Sbjct: 131 TSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL
Match: A0A0A0LUU6 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=3 SV=1)

HSP 1 Score: 155 bits (393), Expect = 1.51e-46
Identity = 84/128 (65.62%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 22  MVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEY--- 81
           MVL+T+SML LIVLFLFI ILCTKRSAK+DGEE  +NLDIEAPIFHY GVEG EQE    
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  -----------------------CTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSL 123
                                  C DRWFKV+GHCPI RT VC+VV+DRGG AMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

[Close]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL
Match: A0A0A0LY10 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=3 SV=1)

HSP 1 Score: 130 bits (328), Expect = 2.04e-36
Identity = 81/147 (55.10%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60
           M LSPSPL  LHS ILL  +   LL  SM   IVL LFI ILC KRSAK D EE  EN+D
Sbjct: 1   MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120
           IEAPIFHY G EG EQ+                           C  RWFKVDGHCPI R
Sbjct: 61  IEAPIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICR 120

[Close]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL
Match: A0A0A0LY13 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 5.73e-31
Identity = 64/121 (52.89%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 27  ISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEY-------- 86
           +SM   IVL  FI I+C+KR AK D EEL +N+D+EA +FHY G EG EQEY        
Sbjct: 2   VSMFLPIVLLFFISIVCSKRFAKSDVEELPKNVDLEALVFHYNGDEGGEQEYAICLCEIE 61

Query: 87  ------------------CTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 121
                             C DRWFKVD HCPI RT VCVVVVD GG AMASS+SLP P++
Sbjct: 62  EGEKCRKMKTCGHVFHKDCIDRWFKVDDHCPICRTSVCVVVVDHGGNAMASSTSLPIPYM 121

The following BLAST results are available for this feature:

BLAST of CsGy1G022510 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G022510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653243.1	7.82e-80	99.19	hypothetical protein Csa_019947 [Cucumis sativus]	[more]
XP_004153928.3	9.87e-59	68.46	RING-H2 finger protein ATL67 [Cucumis sativus]	[more]
XP_011659858.1	1.40e-58	71.14	E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
XP_011648512.2	3.29e-57	68.46	RING-H2 finger protein ATL79 [Cucumis sativus]	[more]
XP_011659772.1	8.54e-53	66.44	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0G7	4.60e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G513470 PE=4 SV=1	[more]
A0A0A0K790	5.68e-53	66.44	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 P...	[more]
A0A0A0LUU6	1.51e-46	65.63	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE...	[more]
A0A0A0LY10	2.04e-36	55.10	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE...	[more]
A0A0A0LY13	5.73e-31	52.89	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE...	[more]

BLAST of CsGy1G022510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G022510.2	CsGy1G022510.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane