CsGy1G022490 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G022490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr1: 21513773 .. 21514252 (+)
RNA-Seq Expression	CsGy1G022490
Synteny	CsGy1G022490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTCCAATTTTTTTACCACCCCTGATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATATGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGGCGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

mRNA sequence

ATGTCATCTCCAATTTTTTTACCACCCCTGATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATATGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGGCGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

Coding sequence (CDS)

ATGTCATCTCCAATTTTTTTACCACCCCTGATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATATGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGGCGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

Protein sequence

MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSLPTPFINRI*

Homology

[Close]

BLAST of CsGy1G022490 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 74  PIFHYSGVE----SGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPIC 133
           PIF YS         ++EC++CL E EE ++ R +  CGH FH DCID WF+    CP+C
Sbjct: 90  PIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 149

Query: 134 RTSV--CMVVIDRGGNAMASSSSLPT 154
           R  V     VI+ G ++ +S  + PT
Sbjct: 150 RAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]

BLAST of CsGy1G022490 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-12
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 74  PIFHYS--GVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 133
           PIF YS    ES  +EC++CL E EE ++ R +  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of CsGy1G022490 vs. ExPASy Swiss-Prot
Match: O64763 (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 33  VLMTVSMLLLIVLFL-FIAILCTKRSAKY-----------DGEE--------SSDNLDIE 92
           V++ +++L L++ F+ F +I C + +A++           D E         ++  LD E
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 93  A----PIFHYSGVES-----GEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 136
           A    P F YS V++     G  ECA+CLCE E+ E  R M  C HVFH DC+D W   +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]

BLAST of CsGy1G022490 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.4e-10
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 32  MVLMTVSMLLLIVLFLFIAILC-------TKRSAKYDGEESSDNLDIEAPIFHYSGVE-- 91
           ++L+ V   L+  L L+ AI C       T+   K D E ++ +      + + S +E  
Sbjct: 42  VLLILVISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELA 101

Query: 92  SGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSV 134
             E ECAICL E E+GE  + ++ C H FH  CI +W      CP CRTS+
Sbjct: 102 GAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSI 152

[Close]

BLAST of CsGy1G022490 vs. ExPASy Swiss-Prot
Match: Q9M0R4 (Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.3e-10
Identity = 43/118 (36.44%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 32  MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEE--------SSDNLDIEA-PIFHYSGVE 91
           +VL+++ +LLL+V  L     C     +  G E          D   IE+ P F YS V+
Sbjct: 52  IVLLSLFLLLLVVYCLNYG--CCIEENETGGHEVLHSRVRRGIDKDVIESFPAFLYSEVK 111

Query: 92  -----SGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCM 136
                +G  ECAICLCE E+ E  R M  C H FH +CID W      CP+CR ++ +
Sbjct: 112 AFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSL 167

[Close]

BLAST of CsGy1G022490 vs. NCBI nr
Match: XP_004153928.3 (RING-H2 finger protein ATL67 [Cucumis sativus])

HSP 1 Score: 300 bits (769), Expect = 1.32e-102
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 70
           MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 71  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLPTPFINRI 159
           TSVCMVVIDRGGNAMASSSSLPTPFINRI
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsGy1G022490 vs. NCBI nr
Match: XP_011648512.2 (RING-H2 finger protein ATL79 [Cucumis sativus])

HSP 1 Score: 284 bits (727), Expect = 3.36e-96
Identity = 142/149 (95.30%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 70
           MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAK DGEESS+NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSENLD 60

Query: 71  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHYSGVE  EQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLPTPFINRI 159
           TSVCMVVIDRGGNAMASSSSL TPFIN+I
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLLTPFINQI 149

[Close]

BLAST of CsGy1G022490 vs. NCBI nr
Match: XP_011659858.1 (E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 281 bits (719), Expect = 5.57e-95
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 70
           MPLSPSPLPPLHSPILLPGFFMVL+T+SMLLLIVLFLFIAILCTKRSAK D EE S+NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60

Query: 71  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHY+ VE GEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLPTPFINRI 159
           TSVC+VVIDRGGNAMASSSSLPTPFINRI
Sbjct: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsGy1G022490 vs. NCBI nr
Match: XP_011659772.1 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 256 bits (654), Expect = 4.51e-85
Identity = 127/149 (85.23%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 70
           MPLSPSP+P LHS ILLPGF M L+TV MLLLIVLF FI ILC KRSAK DGEE  +NLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 71  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHY+GVE  EQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICR
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLPTPFINRI 159
           TSVC+VV+D GGNAMASSSSLPTPFIN+I
Sbjct: 121 TSVCVVVVDHGGNAMASSSSLPTPFINQI 149

[Close]

BLAST of CsGy1G022490 vs. NCBI nr
Match: KGN66137.2 (hypothetical protein Csa_019830 [Cucumis sativus])

HSP 1 Score: 223 bits (568), Expect = 1.75e-72
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 70
           MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 71  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 123
           IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK++
Sbjct: 61  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 113

[Close]

BLAST of CsGy1G022490 vs. ExPASy TrEMBL
Match: A0A0A0K790 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 9.58e-89
Identity = 134/159 (84.28%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKY 60
           MSSP  LP LMPLSPSP+P LHS ILLPGF M L+TV MLLLIVLF FI ILC KRSAK 
Sbjct: 1   MSSPNILPSLMPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKS 60

Query: 61  DGEESSDNLDIEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 120
           DGEE  +NLDIEAPIFHY+GVE  EQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF
Sbjct: 61  DGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 120

Query: 121 KVNGHCPICRTSVCMVVIDRGGNAMASSSSLPTPFINRI 159
           KV+GHCPICRTSVC+VV+D GGNAMASSSSLPTPFIN+I
Sbjct: 121 KVDGHCPICRTSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]

BLAST of CsGy1G022490 vs. ExPASy TrEMBL
Match: A0A0A0LUU6 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=3 SV=1)

HSP 1 Score: 258 bits (658), Expect = 2.65e-86
Identity = 126/128 (98.44%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 32  MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVESGEQECAIC 91
           MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVE GEQEC IC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 151
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 152 PTPFINRI 159
           PTPFINRI
Sbjct: 121 PTPFINRI 128

[Close]

BLAST of CsGy1G022490 vs. ExPASy TrEMBL
Match: A0A0A0LY10 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=3 SV=1)

HSP 1 Score: 220 bits (560), Expect = 4.29e-71
Identity = 110/147 (74.83%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 70
           M LSPSPLP LHS ILLP +   L+  SM L IVL LFI+ILC KRSAK D EE  +N+D
Sbjct: 1   MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 71  IEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHY G E GEQ+CAICLCEIEEGEKCRKMKTCGHVFHKDCI RWFKV+GHCPICR
Sbjct: 61  IEAPIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLPTPFIN 157
           TSVC+VV+DRGGNA+ SS+SL  P++N
Sbjct: 121 TSVCVVVVDRGGNAITSSTSLLIPYMN 147

[Close]

BLAST of CsGy1G022490 vs. ExPASy TrEMBL
Match: A0A5D3BEE2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002240 PE=3 SV=1)

HSP 1 Score: 206 bits (525), Expect = 1.23e-65
Identity = 113/154 (73.38%), Postives = 124/154 (80.52%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKY 60
           MSSPI LP L+PL PSP+PPLHSPI+LP     L+ +SMLLL+VL L I ILC KRSAK 
Sbjct: 1   MSSPILLPFLLPLPPSPVPPLHSPIVLPRSIEDLLMLSMLLLLVLILVITILCGKRSAKS 60

Query: 61  DGEES-SDNLDIEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 120
           D EES S N+DI+APIFHYS     EQECAICLCEIEEGEKCRK+KTCGHVFHKDCIDRW
Sbjct: 61  DEEESLSKNIDIQAPIFHYSVDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDRW 120

Query: 121 FKVNGHCPICRTSVCMVVIDRGGNAMASSSSLPT 153
           F V  HCP+CRTSVC VV+D   NAMASSSS PT
Sbjct: 121 FTVELHCPLCRTSVC-VVVDCSENAMASSSSFPT 153

[Close]

BLAST of CsGy1G022490 vs. ExPASy TrEMBL
Match: A0A1S3C6H2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497232 PE=3 SV=1)

HSP 1 Score: 206 bits (525), Expect = 1.23e-65
Identity = 113/154 (73.38%), Postives = 124/154 (80.52%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKY 60
           MSSPI LP L+PL PSP+PPLHSPI+LP     L+ +SMLLL+VL L I ILC KRSAK 
Sbjct: 1   MSSPILLPFLLPLPPSPVPPLHSPIVLPRSIEDLLMLSMLLLLVLILVITILCGKRSAKS 60

Query: 61  DGEES-SDNLDIEAPIFHYSGVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 120
           D EES S N+DI+APIFHYS     EQECAICLCEIEEGEKCRK+KTCGHVFHKDCIDRW
Sbjct: 61  DEEESLSKNIDIQAPIFHYSVDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDRW 120

Query: 121 FKVNGHCPICRTSVCMVVIDRGGNAMASSSSLPT 153
           F V  HCP+CRTSVC VV+D   NAMASSSS PT
Sbjct: 121 FTVELHCPLCRTSVC-VVVDCSENAMASSSSFPT 153

[Close]

BLAST of CsGy1G022490 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 74  PIFHYSGVE----SGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPIC 133
           PIF YS         ++EC++CL E EE ++ R +  CGH FH DCID WF+    CP+C
Sbjct: 90  PIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 149

Query: 134 RTSV--CMVVIDRGGNAMASSSSLPT 154
           R  V     VI+ G ++ +S  + PT
Sbjct: 150 RAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]

BLAST of CsGy1G022490 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 74  PIFHYS--GVESGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 133
           PIF YS    ES  +EC++CL E EE ++ R +  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of CsGy1G022490 vs. TAIR 10
Match: AT2G35000.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-13
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 33  VLMTVSMLLLIVLFL-FIAILCTKRSAKY-----------DGEE--------SSDNLDIE 92
           V++ +++L L++ F+ F +I C + +A++           D E         ++  LD E
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 93  A----PIFHYSGVES-----GEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 136
           A    P F YS V++     G  ECA+CLCE E+ E  R M  C HVFH DC+D W   +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]

BLAST of CsGy1G022490 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-11
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 32  MVLMTVSMLLLIVLFLFIAILC-------TKRSAKYDGEESSDNLDIEAPIFHYSGVE-- 91
           ++L+ V   L+  L L+ AI C       T+   K D E ++ +      + + S +E  
Sbjct: 42  VLLILVISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELA 101

Query: 92  SGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSV 134
             E ECAICL E E+GE  + ++ C H FH  CI +W      CP CRTS+
Sbjct: 102 GAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSI 152

[Close]

BLAST of CsGy1G022490 vs. TAIR 10
Match: AT4G09130.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11
Identity = 43/118 (36.44%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 32  MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEE--------SSDNLDIEA-PIFHYSGVE 91
           +VL+++ +LLL+V  L     C     +  G E          D   IE+ P F YS V+
Sbjct: 52  IVLLSLFLLLLVVYCLNYG--CCIEENETGGHEVLHSRVRRGIDKDVIESFPAFLYSEVK 111

Query: 92  -----SGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCM 136
                +G  ECAICLCE E+ E  R M  C H FH +CID W      CP+CR ++ +
Sbjct: 112 AFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSL 167

The following BLAST results are available for this feature:

BLAST of CsGy1G022490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22255	3.1e-12	40.70	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LZJ6	6.8e-12	51.61	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
O64763	1.2e-11	33.33	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV...	[more]
Q9FGJ6	6.4e-10	34.23	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9M0R4	8.3e-10	36.44	Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 P...	[more]

BLAST of CsGy1G022490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153928.3	1.32e-102	100.00	RING-H2 finger protein ATL67 [Cucumis sativus]	[more]
XP_011648512.2	3.36e-96	95.30	RING-H2 finger protein ATL79 [Cucumis sativus]	[more]
XP_011659858.1	5.57e-95	93.29	E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
XP_011659772.1	4.51e-85	85.23	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
KGN66137.2	1.75e-72	98.23	hypothetical protein Csa_019830 [Cucumis sativus]	[more]

BLAST of CsGy1G022490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K790	9.58e-89	84.28	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 P...	[more]
A0A0A0LUU6	2.65e-86	98.44	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE...	[more]
A0A0A0LY10	4.29e-71	74.83	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE...	[more]
A0A5D3BEE2	1.23e-65	73.38	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C6H2	1.23e-65	73.38	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497232 PE=3 ...	[more]

BLAST of CsGy1G022490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47560.1	2.2e-13	40.70	RING/U-box superfamily protein	[more]
AT3G62690.1	4.8e-13	51.61	AtL5	[more]
AT2G35000.1	8.3e-13	33.33	RING/U-box superfamily protein	[more]
AT5G47610.1	4.5e-11	34.23	RING/U-box superfamily protein	[more]
AT4G09130.1	5.9e-11	36.44	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 88..129 e-value: 1.7E-5 score: 34.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 87..130 e-value: 7.3E-14 score: 51.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 88..130 score: 12.740079
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..136 e-value: 1.4E-19 score: 71.0
None	No IPR available	PANTHER	PTHR45676:SF98	RING-H2 FINGER PROTEIN ATL2	coord: 31..136
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 81..136
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 31..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G022490.1	CsGy1G022490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane