CsGy1G021100 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G021100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 19816226 .. 19816533 (-)
RNA-Seq Expression	CsGy1G021100
Synteny	CsGy1G021100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTATTGTTATAGGTTGTGGGTATAGTTTTCTGGGATTGATTCACCTATTTGTGGCAGTTCCTAGACTTGCTTCTTTGCTCACTGTATTTAAAATCCATAGTTTCTATCTATTATTTTGCAAAGTATTAATTTAGCCATCAACTACCACCACTAACACCTTCACTCTGAGGAAGACATTCTGTTGAAAGCTCCTTCAATTGAATGGATGTCTTCCGGGGAAGTTTCTTTTTATGAGCGGAGCGACTTTACTGGGGGAAGAAGAGAAAGGAGAGACAGAGAAGGGGACATTCTGAGGGCATAG

mRNA sequence

ATGCTTTCTATTGTTATAGGTTGTGGGTATAGTTTTCTGGGATTGATTCACCTATTTGTGGCAGTTCCTAGACTTGCTTCTTTGCTCACTGAAGACATTCTGTTGAAAGCTCCTTCAATTGAATGGATGTCTTCCGGGGAAGTTTCTTTTTATGAGCGGAGCGACTTTACTGGGGGAAGAAGAGAAAGGAGAGACAGAGAAGGGGACATTCTGAGGGCATAG

Coding sequence (CDS)

ATGCTTTCTATTGTTATAGGTTGTGGGTATAGTTTTCTGGGATTGATTCACCTATTTGTGGCAGTTCCTAGACTTGCTTCTTTGCTCACTGAAGACATTCTGTTGAAAGCTCCTTCAATTGAATGGATGTCTTCCGGGGAAGTTTCTTTTTATGAGCGGAGCGACTTTACTGGGGGAAGAAGAGAAAGGAGAGACAGAGAAGGGGACATTCTGAGGGCATAG

Protein sequence

MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGRRERRDREGDILRA*

Homology

[Close]

BLAST of CsGy1G021100 vs. NCBI nr
Match: KGN65562.1 (hypothetical protein Csa_019680 [Cucumis sativus])

HSP 1 Score: 142 bits (359), Expect = 1.18e-42
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60
          MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR
Sbjct: 1  MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60

Query: 61 RERRDREGDILRA 73
          RERRDREGDILRA
Sbjct: 61 RERRDREGDILRA 73

[Close]

BLAST of CsGy1G021100 vs. ExPASy TrEMBL
Match: A0A0A0LXM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448930 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 5.70e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60
          MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR
Sbjct: 1  MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60

Query: 61 RERRDREGDILRA 73
          RERRDREGDILRA
Sbjct: 61 RERRDREGDILRA 73

The following BLAST results are available for this feature:

BLAST of CsGy1G021100 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G021100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65562.1	1.18e-42	100.00	hypothetical protein Csa_019680 [Cucumis sativus]	[more]

BLAST of CsGy1G021100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXM0	5.70e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448930 PE=4 SV=1	[more]

BLAST of CsGy1G021100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G021100.2	CsGy1G021100.2	mRNA