CsGy1G019040 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G019040
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Phytocyanin domain-containing protein
Location	Gy14Chr1: 17383229 .. 17383807 (+)
RNA-Seq Expression	CsGy1G019040
Synteny	CsGy1G019040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAAAATTAATGAGTTGGAGTTCAATTGCTTGTGTTTTCCTCGTGGGAGCTCTCCTACAAGTCGTTTACGGCTTTGATTATGATGTTGGTGGCGATTTCGGTTGGAACGTTCCACCAATACCCACCTTCTTCTCTGATTGGACTCATAATAAAACTTTCTTTGTTGGTGATAAACTAGGTAGCTGCTTAATTATACCCTAAGACTACTTTTTGTTTGTTTCTATTACAAATTTAAGTAAATTTAAAATAAACCATATATTATGTTTTACAATAAAAATTAAATCATATCGTACAAGTGAGAAAATACATAAACTAAATCATTATCGACAAGAATGAGAGATTCCTTGTTTTATAGTTTGATATATGTGTGGTTTGTTTTTATGTACAGTATTCCAATCAAACTCGTCGGAGTTCCATGATGTGGCAGAGCCTGAAAGTCAAACGGATTTTGATGGATGTGTGAAACCAGGAATTAGTTTAAGTACATCATCTGCCATGTTATCTGTTCTACTTGATTCTCCCGTCGTCGTTACTTCATTTGTACAATTGGCAATCATTGTAACGCGGGTATGA

mRNA sequence

ATGGCTACAAAATTAATGAGTTGGAGTTCAATTGCTTGTGTTTTCCTCGTGGGAGCTCTCCTACAAGTCGTTTACGGCTTTGATTATGATGTTGGTGGCGATTTCGGTTGGAACGTTCCACCAATACCCACCTTCTTCTCTGATTGGACTCATAATAAAACTTTCTTTGTTGGTGATAAACTAGTATTCCAATCAAACTCGTCGGAGTTCCATGATGTGGCAGAGCCTGAAAGTCAAACGGATTTTGATGGATGTGTGAAACCAGGAATTAGTTTAAGTACATCATCTGCCATGTTATCTGTTCTACTTGATTCTCCCGTCGTCGTTACTTCATTTGTACAATTGGCAATCATTGTAACGCGGGTATGA

Coding sequence (CDS)

ATGGCTACAAAATTAATGAGTTGGAGTTCAATTGCTTGTGTTTTCCTCGTGGGAGCTCTCCTACAAGTCGTTTACGGCTTTGATTATGATGTTGGTGGCGATTTCGGTTGGAACGTTCCACCAATACCCACCTTCTTCTCTGATTGGACTCATAATAAAACTTTCTTTGTTGGTGATAAACTAGTATTCCAATCAAACTCGTCGGAGTTCCATGATGTGGCAGAGCCTGAAAGTCAAACGGATTTTGATGGATGTGTGAAACCAGGAATTAGTTTAAGTACATCATCTGCCATGTTATCTGTTCTACTTGATTCTCCCGTCGTCGTTACTTCATTTGTACAATTGGCAATCATTGTAACGCGGGTATGA

Protein sequence

MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDKLVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSPVVVTSFVQLAIIVTRV*

Homology

[Close]

BLAST of CsGy1G019040 vs. ExPASy Swiss-Prot
Match: P29602 (Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 31 VGGDFGWNVPPIPTFFSDWTHNKTFFVGDKLVFQSNSSEFHDVAEPESQTDFDGC 86
          VG + GW+VP  P F+S W   KTF VGD L F   ++  H+V E E++  FD C
Sbjct: 7  VGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANA-HNVHEMETKQSFDAC 60

[Close]

BLAST of CsGy1G019040 vs. ExPASy Swiss-Prot
Match: P42849 (Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-06
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 28  DYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDKLVFQSNSSEFHDVAEPESQTDFDGCVK 87
           DYDVGGD  W  P  P F+  W   KTF VGD+L F   ++  HDVA   ++  FD C K
Sbjct: 2   DYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDF-AAGMHDVA-VVTKDAFDNCKK 61

Query: 88  PGISLSTSSAMLSVLLDS 106
                  ++  + ++L++
Sbjct: 62  ENPISHMTTPPVKIMLNT 77

[Close]

BLAST of CsGy1G019040 vs. NCBI nr
Match: XP_031742342.1 (umecyanin-like [Cucumis sativus])

HSP 1 Score: 218 bits (554), Expect = 3.52e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK
Sbjct: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP
Sbjct: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106

[Close]

BLAST of CsGy1G019040 vs. NCBI nr
Match: XP_008443976.1 (PREDICTED: umecyanin-like [Cucumis melo] >KAA0050147.1 umecyanin-like [Cucumis melo var. makuwa] >TYK06403.1 umecyanin-like [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 1.45e-52
Identity = 88/106 (83.02%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMS SSIAC+FLVGALLQVV   DYDVGGDFGWN+PP PTFFSDWT NKTFFVGDK
Sbjct: 1   MATKLMSSSSIACLFLVGALLQVVSAVDYDVGGDFGWNLPPNPTFFSDWTRNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S SSE HDVAEPE QTD DGCVKPGI+LSTS A+LS+ LDSP
Sbjct: 61  LVFRSKSSESHDVAEPERQTDLDGCVKPGITLSTS-AVLSISLDSP 105

[Close]

BLAST of CsGy1G019040 vs. NCBI nr
Match: XP_004150038.1 (umecyanin [Cucumis sativus] >XP_031745645.1 umecyanin-like [Cucumis sativus] >KAE8637189.1 hypothetical protein CSA_021702 [Cucumis sativus] >KGN65339.1 hypothetical protein Csa_019858 [Cucumis sativus])

HSP 1 Score: 158 bits (399), Expect = 1.16e-46
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMS SSIAC+ LVGA L V    DYDVGGDFGW++PP PTFFSDW  NKTFFVGDK
Sbjct: 1   MATKLMSLSSIACLLLVGAFLHVASAVDYDVGGDFGWSLPPNPTFFSDWARNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S +SE HDVAEP+ Q D DGCV+PGISLSTS A+LS+ LDSP
Sbjct: 61  LVFRSKASETHDVAEPDGQVDLDGCVEPGISLSTS-AVLSISLDSP 105

[Close]

BLAST of CsGy1G019040 vs. NCBI nr
Match: XP_038880126.1 (umecyanin-like [Benincasa hispida])

HSP 1 Score: 153 bits (386), Expect = 1.31e-44
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATK+ S S IAC+FLVGALLQVV   DYDVGG+FGWN+P   TFFSDWT NKTFF+GDK
Sbjct: 1   MATKITSLSPIACLFLVGALLQVVSAVDYDVGGNFGWNLPANSTFFSDWTRNKTFFIGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S + E HDVAEPE Q DF+GCVKPGI LSTS+ +LS+ LD+P
Sbjct: 61  LVFRSKAEETHDVAEPERQVDFEGCVKPGIVLSTST-VLSITLDAP 105

[Close]

BLAST of CsGy1G019040 vs. NCBI nr
Match: KAG6589839.1 (Uclacyanin 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (349), Expect = 4.79e-39
Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           M  KLMS  SIA +FL+GALLQVV   D+DVGGDFGWN+PP  TFFSDW  NK F VGDK
Sbjct: 1   MGPKLMS--SIASLFLLGALLQVVAAVDHDVGGDFGWNLPPNTTFFSDWASNKAFSVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S ++E HDVAEP S+ DFDGCVKPGI  STS A+ SV LD P
Sbjct: 61  LVFRSKANEMHDVAEPNSEVDFDGCVKPGIVFSTS-AVFSVALDRP 103

[Close]

BLAST of CsGy1G019040 vs. ExPASy TrEMBL
Match: A0A0A0LTT8 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G348940 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.45e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK
Sbjct: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP
Sbjct: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106

[Close]

BLAST of CsGy1G019040 vs. ExPASy TrEMBL
Match: A0A5D3C3B0 (Umecyanin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001020 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 7.02e-53
Identity = 88/106 (83.02%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMS SSIAC+FLVGALLQVV   DYDVGGDFGWN+PP PTFFSDWT NKTFFVGDK
Sbjct: 1   MATKLMSSSSIACLFLVGALLQVVSAVDYDVGGDFGWNLPPNPTFFSDWTRNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S SSE HDVAEPE QTD DGCVKPGI+LSTS A+LS+ LDSP
Sbjct: 61  LVFRSKSSESHDVAEPERQTDLDGCVKPGITLSTS-AVLSISLDSP 105

[Close]

BLAST of CsGy1G019040 vs. ExPASy TrEMBL
Match: A0A1S3BA22 (umecyanin-like OS=Cucumis melo OX=3656 GN=LOC103487433 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 7.02e-53
Identity = 88/106 (83.02%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMS SSIAC+FLVGALLQVV   DYDVGGDFGWN+PP PTFFSDWT NKTFFVGDK
Sbjct: 1   MATKLMSSSSIACLFLVGALLQVVSAVDYDVGGDFGWNLPPNPTFFSDWTRNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S SSE HDVAEPE QTD DGCVKPGI+LSTS A+LS+ LDSP
Sbjct: 61  LVFRSKSSESHDVAEPERQTDLDGCVKPGITLSTS-AVLSISLDSP 105

[Close]

BLAST of CsGy1G019040 vs. ExPASy TrEMBL
Match: A0A0A0LWH3 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G348440 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 5.60e-47
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           MATKLMS SSIAC+ LVGA L V    DYDVGGDFGW++PP PTFFSDW  NKTFFVGDK
Sbjct: 1   MATKLMSLSSIACLLLVGAFLHVASAVDYDVGGDFGWSLPPNPTFFSDWARNKTFFVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S +SE HDVAEP+ Q D DGCV+PGISLSTS A+LS+ LDSP
Sbjct: 61  LVFRSKASETHDVAEPDGQVDLDGCVEPGISLSTS-AVLSISLDSP 105

[Close]

BLAST of CsGy1G019040 vs. ExPASy TrEMBL
Match: A0A6J1HB34 (umecyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111461718 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 1.89e-38
Identity = 72/106 (67.92%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MATKLMSWSSIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDK 60
           M  KLMS  SIA +FL+GALLQVV   D+DVGGDFGWN+PP  TFFSDW  NK F VGDK
Sbjct: 1   MGPKLMS--SIASLFLLGALLQVVSAVDHDVGGDFGWNLPPNTTFFSDWASNKAFSVGDK 60

Query: 61  LVFQSNSSEFHDVAEPESQTDFDGCVKPGISLSTSSAMLSVLLDSP 106
           LVF+S ++E HDVAEP S+ D DGCVKPGI  STS A+ SV LD P
Sbjct: 61  LVFRSKANEMHDVAEPNSEVDLDGCVKPGIVFSTS-AVFSVALDRP 103

[Close]

BLAST of CsGy1G019040 vs. TAIR 10
Match: AT1G17800.1 (early nodulin-like protein 22 )

HSP 1 Score: 41.6 bits (96), Expect = 5.4e-04
Identity = 24/76 (31.58%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 10 SIACVFLVGALLQVVYGFDYDVGGDFGWNVPPIPTFFSDWTHNKTFFVGDKLVFQSNSSE 69
          ++ C+FL  A+        Y VGGD GW+ P +P     W   KTF+ GD L F+ +   
Sbjct: 22 TVLCLFLANAVTYARRPTTYIVGGDDGWD-PVVP--MDTWARGKTFYAGDILEFKYDYQR 81

Query: 70 FHDVAEPESQTDFDGC 86
          F+ +    ++T ++ C
Sbjct: 82 FNLIV--VNRTGYETC 92

The following BLAST results are available for this feature:

BLAST of CsGy1G019040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29602	3.3e-06	45.45	Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3	[more]
P42849	9.6e-06	37.18	Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1	[more]

BLAST of CsGy1G019040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742342.1	3.52e-70	100.00	umecyanin-like [Cucumis sativus]	[more]
XP_008443976.1	1.45e-52	83.02	PREDICTED: umecyanin-like [Cucumis melo] >KAA0050147.1 umecyanin-like [Cucumis m...	[more]
XP_004150038.1	1.16e-46	74.53	umecyanin [Cucumis sativus] >XP_031745645.1 umecyanin-like [Cucumis sativus] >KA...	[more]
XP_038880126.1	1.31e-44	71.70	umecyanin-like [Benincasa hispida]	[more]
KAG6589839.1	4.79e-39	68.87	Uclacyanin 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsGy1G019040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTT8	1.45e-70	100.00	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G348940...	[more]
A0A5D3C3B0	7.02e-53	83.02	Umecyanin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00102...	[more]
A0A1S3BA22	7.02e-53	83.02	umecyanin-like OS=Cucumis melo OX=3656 GN=LOC103487433 PE=4 SV=1	[more]
A0A0A0LWH3	5.60e-47	74.53	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G348440...	[more]
A0A6J1HB34	1.89e-38	67.92	umecyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111461718 PE=4 SV=1	[more]

BLAST of CsGy1G019040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17800.1	5.4e-04	31.58	early nodulin-like protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 26..110 e-value: 1.5E-13 score: 52.8
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 26..92
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 44..103 e-value: 6.7E-8 score: 32.4
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 27..122 score: 19.658575
None	No IPR available	PANTHER	PTHR33021:SF360	OS08G0482600 PROTEIN	coord: 8..94
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 8..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G019040.2	CsGy1G019040.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity