CsGy1G017295 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G017295
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 15531973 .. 15532284 (+)
RNA-Seq Expression	CsGy1G017295
Synteny	CsGy1G017295

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

mRNA sequence

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Protein sequence

MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA*

Homology

[Close]

BLAST of CsGy1G017295 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_019746 [Cucumis sativus])

HSP 1 Score: 205 bits (521), Expect = 1.94e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]

BLAST of CsGy1G017295 vs. NCBI nr
Match: KAA0050080.1 (hypothetical protein E6C27_scaffold675G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (455), Expect = 2.27e-56
Identity = 87/103 (84.47%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           M AS+K+P+IFLVCIAIL LPVM RT TTLDQF  KD ASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MAASMKVPLIFLVCIAILTLPVMARTVTTLDQFVMKDFASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           SMPPHPSCCRAILKLNDCNPE YKDVPS DK+L+KKIC LWG 
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEAYKDVPSADKELVKKICALWGV 103

[Close]

BLAST of CsGy1G017295 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.53e-29
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRTTTTL--DQFSTKDVASVNCTVFTFEATKCMIDVMKN 62
           AS+KLP++F VC+AILA+  +  T      D F+ ++++ + CT F  EATKC+IDVMKN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61

Query: 63  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           ++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG 
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of CsGy1G017295 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 2.18e-29
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 62
           AS+KLP++FLVCIAILA+  M  T      D F+ ++ + + CT F  EAT CM+DVMKN
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKN 61

Query: 63  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           ++ PHPSCC+A  KLNDC+ E  K +PS D  LIK IC LWG 
Sbjct: 62  AVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of CsGy1G017295 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 4.39e-29
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRTTTTL--DQFSTKDVASVNCTVFTFEATKCMIDVMKN 62
           AS+KLP++F VC+AILA+  +  T      D F+ + ++ + CT F  EATKC+IDVMKN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKN 61

Query: 63  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           ++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG 
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL
Match: A0A0A0LTE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 9.38e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL
Match: A0A5A7U471 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00640 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 1.10e-56
Identity = 87/103 (84.47%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           M AS+K+P+IFLVCIAIL LPVM RT TTLDQF  KD ASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MAASMKVPLIFLVCIAILTLPVMARTVTTLDQFVMKDFASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           SMPPHPSCCRAILKLNDCNPE YKDVPS DK+L+KKIC LWG 
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEAYKDVPSADKELVKKICALWGV 103

[Close]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 7.43e-30
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRTTTTL--DQFSTKDVASVNCTVFTFEATKCMIDVMKN 62
           AS+KLP++F VC+AILA+  +  T      D F+ ++++ + CT F  EATKC+IDVMKN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61

Query: 63  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           ++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG 
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.12e-29
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRTTTTL--DQFSTKDVASVNCTVFTFEATKCMIDVMKN 62
           AS+KLP++F VC+AILA+  +  T      D F+ + ++ + CT F  EATKC+IDVMKN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKN 61

Query: 63  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           ++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG 
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.77e-23
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 6   KLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPPH 65
           KLP+  L CI ILA  VM R  T        D++   C  F  +AT+C+IDV+KN++ PH
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAPEGDISLFPCKSFVPKATECVIDVLKNAVAPH 66

Query: 66  PSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103
           PSCC+AI +L+DC+ +  KD+PS D  L+K IC LWG 
Sbjct: 67  PSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGV 104

The following BLAST results are available for this feature:

BLAST of CsGy1G017295 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G017295 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65195.1	1.94e-66	100.00	hypothetical protein Csa_019746 [Cucumis sativus]	[more]
KAA0050080.1	2.27e-56	84.47	hypothetical protein E6C27_scaffold675G00640 [Cucumis melo var. makuwa]	[more]
TYK10330.1	1.53e-29	53.40	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAE8653021.1	2.18e-29	54.37	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
KAA0050078.1	4.39e-29	53.40	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE1	9.38e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]
A0A5A7U471	1.10e-56	84.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CG41	7.43e-30	53.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U483	2.12e-29	53.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U8Y3	2.77e-23	47.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsGy1G017295 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017295.1	CsGy1G017295.1	mRNA