CsGy1G014040 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G014040
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCyclin-dependent protein kinase inhibitor SMR2
LocationGy14Chr1: 9665422 .. 9666041 (+)
RNA-Seq ExpressionCsGy1G014040
SyntenyCsGy1G014040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTCTTAGAAGCCCCGGAGGCACCGGAACATGGTGATCGAAGCACGGAGGAAGGTAGAGGAGAAGCACTTAAAGCAGCTGAGCATGATGACGGAGAGAGCTGTCGAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGGTGTACAAGTGTATAAAACCCTAGAGTGTTTGTATATTTATATATATATATATATAGATATATACACGGTTAAATTATAAGTTTGATCTTTAAATTTACAACGTCTATCTATTTAACGTTCATATTTAATCAATTATATTCTAATAAAATTCTAAATTTCATTTTATAACTATCTCATTTTTGTTCTTAGTTTTAAAATTTTGGTCTATAAACAAAACCTTTCTGCTTTGGTATTTCTTCTTTTGTTTTCTACTCTATTTTACCAAATGTTTTAAAAATGAATTCACTTTTTTTCAGTTTTAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTCTTAGAAGCCCCGGAGGCACCGGAACATGGTGATCGAAGCACGGAGGAAGGTAGAGGAGAAGCACTTAAAGCAGCTGAGCATGATGACGGAGAGAGCTGTCGAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGTTTTAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTCTTAGAAGCCCCGGAGGCACCGGAACATGGTGATCGAAGCACGGAGGAAGGTAGAGGAGAAGCACTTAAAGCAGCTGAGCATGATGACGGAGAGAGCTGTCGAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGTTTTAA

Protein sequence

MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQSCPTTPRKQRVVRKRKFSDQSFFEATGRGEF*
Homology
BLAST of CsGy1G014040 vs. NCBI nr
Match: KAE8652786.1 (hypothetical protein Csa_022878 [Cucumis sativus])

HSP 1 Score: 179 bits (455), Expect = 2.20e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89
          CPTTPRKQRVVRKRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

BLAST of CsGy1G014040 vs. NCBI nr
Match: KAA0052125.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98071.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 6.42e-45
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MSQ HKSDQ+KVLE P+A E+GDRSTEEG GEALKAAE D+GESCRTPTS +HRIPIAQS
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89
          CPTTPRKQRV RKRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 89

BLAST of CsGy1G014040 vs. NCBI nr
Match: KAG6583595.1 (hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 4.29e-31
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS +HRIP A+
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLRHRIPTAR 60

Query: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89
          S PTTPRK++V  KRKFSDQSFFE TGRGE
Sbjct: 61 SYPTTPRKRKVASKRKFSDQSFFEVTGRGE 86

BLAST of CsGy1G014040 vs. NCBI nr
Match: KAG7019295.1 (hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (288), Expect = 4.29e-31
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+  +    GESCRTPTS +HRIP A+
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCS----GESCRTPTSLRHRIPTAR 60

Query: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89
          S PTTPRK+++  KRKFSDQSFFE TGRGE
Sbjct: 61 SYPTTPRKRKIASKRKFSDQSFFEVTGRGE 86

BLAST of CsGy1G014040 vs. NCBI nr
Match: KAG6586014.1 (hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037379.1 hypothetical protein SDJN02_01004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107 bits (268), Expect = 5.17e-28
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MS+F  SD QK LE  +  E  DRS EE  GEAL A E   GESCRTP+S +HRIP A+S
Sbjct: 1  MSEFQNSDHQKSLEPQKPAEEVDRSKEEDGGEALLAVEDGGGESCRTPSSLKHRIPAARS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89
          CPTTPRK++VV KRKFSDQSFFE+T R E
Sbjct: 61 CPTTPRKKKVVSKRKFSDQSFFESTRREE 89

BLAST of CsGy1G014040 vs. ExPASy TrEMBL
Match: A0A0A0LV74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 5.21e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEF 90
          CPTTPRKQRVVRKRKFSDQSFFEATGRGEF
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEF 90

BLAST of CsGy1G014040 vs. ExPASy TrEMBL
Match: A0A5D3BHE9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00010 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 3.11e-45
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MSQ HKSDQ+KVLE P+A E+GDRSTEEG GEALKAAE D+GESCRTPTS +HRIPIAQS
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89
          CPTTPRKQRV RKRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 89

BLAST of CsGy1G014040 vs. ExPASy TrEMBL
Match: A0A2H5Q221 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.10e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 26 TEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV--RKRKFSDQSFF 85
          TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V   KRK  +  FF
Sbjct: 29 TEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQVSFHKRKMHEFLFF 88

Query: 86 EATGRGE 89
          EATGR E
Sbjct: 89 EATGREE 95

BLAST of CsGy1G014040 vs. ExPASy TrEMBL
Match: V4RSW1 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.56e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 26 TEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV--RKRKFSDQSFF 85
          TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V   KRK  +  FF
Sbjct: 29 TEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLFF 88

Query: 86 EATGRGE 89
          EATGR E
Sbjct: 89 EATGREE 95

BLAST of CsGy1G014040 vs. ExPASy TrEMBL
Match: A0A067F2H9 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0381851mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.75e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 26  TEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV--RKRKFSDQSFF 85
           TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V   KRK  +  FF
Sbjct: 38  TEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLFF 97

Query: 86  EATGRGE 89
           EATGR E
Sbjct: 98  EATGREE 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8652786.12.20e-56100.00hypothetical protein Csa_022878 [Cucumis sativus][more]
KAA0052125.16.42e-4585.39cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98... [more]
KAG6583595.14.29e-3170.00hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019295.14.29e-3168.89hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6586014.15.17e-2865.17hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LV745.21e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1[more]
A0A5D3BHE93.11e-4585.39Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11... [more]
A0A2H5Q2211.10e-1156.72Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1[more]
V4RSW11.56e-1156.72Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 ... [more]
A0A067F2H91.75e-1156.72Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0381851... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..90
NoneNo IPR availablePANTHERPTHR33142:SF13CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKEcoord: 1..89
IPR040389Cyclin-dependent protein kinase inhibitor SMRPANTHERPTHR33142CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G014040.2CsGy1G014040.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication