CsGy1G012950 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G012950
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LOB domain-containing protein
Location	Gy14Chr1: 8388155 .. 8389155 (-)
RNA-Seq Expression	CsGy1G012950
Synteny	CsGy1G012950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCCGCCTAAACTATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGTAACCTTTTCTTTTTCCAACAAACCTTTCCTTTCTTTGGAAAAGATAAACATTCTTTACTAATCCTTAAAAAGGAAAATACATAACTAGAAGATCTTAGTTTATGATTCCTAACCTCATATTGAATTTGTTAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGAAATAGTATTTAATCTAGTTTAGAATCAACGAGTTAGATTAGACATTGAGACATTACCTTCAAAAGATTTCGTACTTAAATACTTCAGTAATCAAGATGCTCTAAATAACGACTAAGTACTACTCTTTCATATATTTGACTTTAGTAGACTCGTTAGAATTTTTTTATATATACTTCTCATCTAGTTCCTTTAGTTTCTTTGAACTCCTCTCAATTCTTATCAAATGAATGGAAAAAATAGTCTCAAAATCTCATAGAAAAACAATACTTTAGTTATAAAACAGGCCACACATTGTATTCTC

mRNA sequence

CCCCCGCCTAAACTATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGAAATAGTATTTAATCTAGTTTAGAATCAACGAGTTAGATTAGACATTGAGACATTACCTTCAAAAGATTTCGTACTTAAATACTTCAGTAATCAAGATGCTCTAAATAACGACTAAGTACTACTCTTTCATATATTTGACTTTAGTAGACTCGTTAGAATTTTTTTATATATACTTCTCATCTAGTTCCTTTAGTTTCTTTGAACTCCTCTCAATTCTTATCAAATGAATGGAAAAAATAGTCTCAAAATCTCATAGAAAAACAATACTTTAGTTATAAAACAGGCCACACATTGTATTCTC

Coding sequence (CDS)

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Protein sequence

MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT*

Homology

[Close]

BLAST of CsGy1G012950 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSS------------SPCAACKILRRRCRENCELGPYFPSMEPL 60
           ME  ++ + A+T ++  SS            SPCAACKILRRRC E C L PYFP  +P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 61  KFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQIN 120
           KFTIAHRVFGASNIIK LQ+LPESQR DAVNSMVYEA  RIRDP+YGCAG+I+HLQRQ++
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 121 DLQGELAKAQAEVLRMHCQQANLMTLI 136
           +LQ +LAKAQ E++ M  Q++NL+ LI
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELI 147

[Close]

BLAST of CsGy1G012950 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 6.0e-44
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLI 136
           SMVYEA  R+RDP+YGCAG+I+HLQRQ+++LQ +LAK Q E++ M  Q+++L+ LI
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CsGy1G012950 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.1e-37
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 17  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 76
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 77  AVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIC 136
           AV+SMVYEA+ R+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+       
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNF---- 128

Query: 137 KELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CsGy1G012950 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-34
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 19  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 78
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 79  NSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           NS+V+EA+ R+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CsGy1G012950 vs. ExPASy Swiss-Prot
Match: Q9AT61 (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-33
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 134
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_004147298.1 (LOB domain-containing protein 1 [Cucumis sativus] >KGN64754.1 hypothetical protein Csa_014184 [Cucumis sativus])

HSP 1 Score: 365 bits (938), Expect = 1.95e-127
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLPESQRGDAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLI KELGQ+PQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

Query: 181 MWT 183
           MWT
Sbjct: 181 MWT 183

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_008463578.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0051930.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12232.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 318 bits (815), Expect = 8.94e-109
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           M+KS E NTAS  VV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGAS
Sbjct: 1   MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQ+LP+SQR DAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAE
Sbjct: 61  NIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLICKELGQMP+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP
Sbjct: 121 VLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEP 177

Query: 181 MWT 183
           +WT
Sbjct: 181 LWT 177

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_038893916.1 (LOB domain-containing protein 1 [Benincasa hispida])

HSP 1 Score: 310 bits (793), Expect = 2.16e-105
Identity = 155/183 (84.70%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKS E NTA+    V   SPCAACKILRRRCRENCELGPYFP  EPLKFTIAHR+FGAS
Sbjct: 1   MEKS-EPNTAAATTAV---SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRIFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLP+SQR DAVNSMVYEAS RIRDPIYGCAGSIF LQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPKSQREDAVNSMVYEASARIRDPIYGCAGSIFQLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           +L+M CQQANLMTLICKEL QMPQPPM+DHQSLND YNIASPQSYHS SYLFE+ N+LEP
Sbjct: 121 ILKMQCQQANLMTLICKELAQMPQPPMYDHQSLNDNYNIASPQSYHSSSYLFEDSNILEP 179

Query: 181 MWT 183
           +WT
Sbjct: 181 LWT 179

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_038895012.1 (LOB domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 247 bits (631), Expect = 2.21e-80
Identity = 120/174 (68.97%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 12  TAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPE 71
           T VVV   SPCAACKILRRRC E C L PYFP  +PLKFTIAHRVFGASNIIKLLQDLPE
Sbjct: 32  TGVVV---SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPE 91

Query: 72  SQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANL 131
           SQR DAV+S+VYEA+ RIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ +HC+QANL
Sbjct: 92  SQRADAVSSLVYEANARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCRQANL 151

Query: 132 MTLICKELGQMPQP--PMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 183
           + LICKEL Q+P P  P+ DH+SL++ +NIA+PQSY  Y+ LFE+ N+ +P+WT
Sbjct: 152 VALICKELTQLPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_022157927.1 (LOB domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 241 bits (615), Expect = 5.80e-78
Identity = 115/165 (69.70%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC E C L PYFP  +P KFTIAHRVFGASNIIKLLQDLPESQR DAV+
Sbjct: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVS 96

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKEL 139
           S+VYEAS RIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ MHC QA+L+ LICKEL
Sbjct: 97  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNMHCHQASLVALICKEL 156

Query: 140 GQMPQP-PMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 183
            Q P P P  DH+SL++ +NIA+PQSY +Y+   E+ N+ EP+WT
Sbjct: 157 AQTPPPVPPPDHRSLDNNFNIATPQSYQNYTPFLEDSNIWEPLWT 201

[Close]

BLAST of CsGy1G012950 vs. ExPASy TrEMBL
Match: A0A0A0LUS4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=3 SV=1)

HSP 1 Score: 365 bits (938), Expect = 9.43e-128
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLPESQRGDAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLI KELGQ+PQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

Query: 181 MWT 183
           MWT
Sbjct: 181 MWT 183

[Close]

BLAST of CsGy1G012950 vs. ExPASy TrEMBL
Match: A0A5D3CLP6 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00360 PE=3 SV=1)

HSP 1 Score: 318 bits (815), Expect = 4.33e-109
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           M+KS E NTAS  VV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGAS
Sbjct: 1   MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQ+LP+SQR DAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAE
Sbjct: 61  NIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLICKELGQMP+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP
Sbjct: 121 VLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEP 177

Query: 181 MWT 183
           +WT
Sbjct: 181 LWT 177

[Close]

BLAST of CsGy1G012950 vs. ExPASy TrEMBL
Match: A0A1S3CK31 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=3 SV=1)

HSP 1 Score: 318 bits (815), Expect = 4.33e-109
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           M+KS E NTAS  VV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGAS
Sbjct: 1   MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQ+LP+SQR DAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAE
Sbjct: 61  NIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLICKELGQMP+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP
Sbjct: 121 VLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEP 177

Query: 181 MWT 183
           +WT
Sbjct: 181 LWT 177

[Close]

BLAST of CsGy1G012950 vs. ExPASy TrEMBL
Match: A0A6J1DVT7 (LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111024535 PE=3 SV=1)

HSP 1 Score: 241 bits (615), Expect = 2.81e-78
Identity = 115/165 (69.70%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC E C L PYFP  +P KFTIAHRVFGASNIIKLLQDLPESQR DAV+
Sbjct: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVS 96

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKEL 139
           S+VYEAS RIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ MHC QA+L+ LICKEL
Sbjct: 97  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNMHCHQASLVALICKEL 156

Query: 140 GQMPQP-PMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 183
            Q P P P  DH+SL++ +NIA+PQSY +Y+   E+ N+ EP+WT
Sbjct: 157 AQTPPPVPPPDHRSLDNNFNIATPQSYQNYTPFLEDSNIWEPLWT 201

[Close]

BLAST of CsGy1G012950 vs. ExPASy TrEMBL
Match: A0A5D3CPB0 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00420 PE=3 SV=1)

HSP 1 Score: 237 bits (605), Expect = 4.48e-77
Identity = 114/170 (67.06%), Postives = 137/170 (80.59%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC E C L PYFP  +PLKFTIAHR+FGASNIIKLL DLP+SQR DAV+
Sbjct: 11  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 70

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKEL 139
           S+VYEAS RIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ +HC Q NL+ LICKEL
Sbjct: 71  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKEL 130

Query: 140 GQMPQPPMH------DHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 183
            Q P PPM       DH+SL++ +NIA+PQSY  Y+ LFE+ N+ +P+WT
Sbjct: 131 AQTP-PPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 179

[Close]

BLAST of CsGy1G012950 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 187.6 bits (475), Expect = 9.1e-48
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 1   MEKSAETNTASTAVVVGSS------------SPCAACKILRRRCRENCELGPYFPSMEPL 60
           ME  ++ + A+T ++  SS            SPCAACKILRRRC E C L PYFP  +P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 61  KFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQIN 120
           KFTIAHRVFGASNIIK LQ+LPESQR DAVNSMVYEA  RIRDP+YGCAG+I+HLQRQ++
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 121 DLQGELAKAQAEVLRMHCQQANLMTLI 136
           +LQ +LAKAQ E++ M  Q++NL+ LI
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELI 147

[Close]

BLAST of CsGy1G012950 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 178.7 bits (452), Expect = 4.2e-45
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLI 136
           SMVYEA  R+RDP+YGCAG+I+HLQRQ+++LQ +LAK Q E++ M  Q+++L+ LI
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CsGy1G012950 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-38
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 17  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 76
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 77  AVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIC 136
           AV+SMVYEA+ R+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+       
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNF---- 128

Query: 137 KELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CsGy1G012950 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-35
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 19  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 78
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 79  NSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           NS+V+EA+ R+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CsGy1G012950 vs. TAIR 10
Match: AT2G30340.1 (LOB domain-containing protein 13 )

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-34
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 80  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 134
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

The following BLAST results are available for this feature:

BLAST of CsGy1G012950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	1.3e-46	61.90	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	6.0e-44	69.83	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9SHE9	4.1e-37	46.71	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	1.9e-34	59.63	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9AT61	8.1e-33	57.02	LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S...	[more]

BLAST of CsGy1G012950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147298.1	1.95e-127	98.36	LOB domain-containing protein 1 [Cucumis sativus] >KGN64754.1 hypothetical prote...	[more]
XP_008463578.1	8.94e-109	86.34	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0051930.1 LOB...	[more]
XP_038893916.1	2.16e-105	84.70	LOB domain-containing protein 1 [Benincasa hispida]	[more]
XP_038895012.1	2.21e-80	68.97	LOB domain-containing protein 1-like [Benincasa hispida]	[more]
XP_022157927.1	5.80e-78	69.70	LOB domain-containing protein 11-like [Momordica charantia]	[more]

BLAST of CsGy1G012950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUS4	9.43e-128	98.36	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=3 SV...	[more]
A0A5D3CLP6	4.33e-109	86.34	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CK31	4.33e-109	86.34	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=...	[more]
A0A6J1DVT7	2.81e-78	69.70	LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A5D3CPB0	4.48e-77	67.06	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of CsGy1G012950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	9.1e-48	61.90	LOB domain-containing protein 1	[more]
AT2G28500.1	4.2e-45	69.83	LOB domain-containing protein 11	[more]
AT1G31320.1	2.9e-38	46.71	LOB domain-containing protein 4	[more]
AT2G30130.1	1.4e-35	59.63	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G30340.1	5.7e-34	57.02	LOB domain-containing protein 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..127
None	No IPR available	PANTHER	PTHR31301:SF137	LOB DOMAIN-CONTAINING PROTEIN 1	coord: 13..182
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 13..182
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 21..118 e-value: 4.0E-38 score: 130.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 20..121 score: 25.189384

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012950.2	CsGy1G012950.2	mRNA