CsGy1G012915 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G012915
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionReverse transcriptase domain-containing protein
LocationGy14Chr1: 8336552 .. 8336872 (-)
RNA-Seq ExpressionCsGy1G012915
SyntenyCsGy1G012915
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACTCTTTTATCAAAAAACTGTTTAGGTTATGATACATTTGAGTCTTGCTCAGATCTCTCCATCAACCATAAAAGGTCAGAAATCTTGGGTACCAACCTCTCTTCTACTGAATTGAATTCAATTGCTGATAGCTTTGGTTGCAAAATTAGTTCATGGCCAAATACTTATCTCGGGCTCCCTTTCCATGTTAAGTCGAAATCTCTCATGTTTTGCCAACCAGTCATTGAAAAGGTTGAAAAGAAGCTTCATTGTTGGTCATGTTCTCACATTTCAAAGGGCTGTAGGATTACCCCCATCCAAGCAAATGTTATGTAA

mRNA sequence

ATGAGCACTCTTTTATCAAAAAACTGTTTAGGTTATGATACATTTGAGTCTTGCTCAGATCTCTCCATCAACCATAAAAGGTCAGAAATCTTGGGTACCAACCTCTCTTCTACTGAATTGAATTCAATTGCTGATAGCTTTGGTTGCAAAATTAGTTCATGGCCAAATACTTATCTCGGGCTCCCTTTCCATGTTAAGTCGAAATCTCTCATGTTTTGCCAACCAGTCATTGAAAAGGTTGAAAAGAAGCTTCATTGTTGGTCATGTTCTCACATTTCAAAGGGCTGTAGGATTACCCCCATCCAAGCAAATGTTATGTAA

Coding sequence (CDS)

ATGAGCACTCTTTTATCAAAAAACTGTTTAGGTTATGATACATTTGAGTCTTGCTCAGATCTCTCCATCAACCATAAAAGGTCAGAAATCTTGGGTACCAACCTCTCTTCTACTGAATTGAATTCAATTGCTGATAGCTTTGGTTGCAAAATTAGTTCATGGCCAAATACTTATCTCGGGCTCCCTTTCCATGTTAAGTCGAAATCTCTCATGTTTTGCCAACCAGTCATTGAAAAGGTTGAAAAGAAGCTTCATTGTTGGTCATGTTCTCACATTTCAAAGGGCTGTAGGATTACCCCCATCCAAGCAAATGTTATGTAA

Protein sequence

MSTLLSKNCLGYDTFESCSDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIEKVEKKLHCWSCSHISKGCRITPIQANVM*
Homology
BLAST of CsGy1G012915 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 82.8 bits (203), Expect = 9.40e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 15  FESCSDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQ 74
           F + S L IN  +  + G N    +L  +ADS+GC++ SWP  YLGLP   + K+LMF  
Sbjct: 531 FCTISGLKINKAKCSMAGINSDCEKLKGMADSWGCEVGSWPIKYLGLPLGGRPKALMFWD 590

Query: 75  PVIEKVEKKLHCWSCSHISKGCRITPIQ 102
           PV+EK+EK+L  W  + +SKG R+T IQ
Sbjct: 591 PVVEKMEKRLQSWKKAFLSKGGRLTLIQ 618

BLAST of CsGy1G012915 vs. NCBI nr
Match: VVA31869.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 80.1 bits (196), Expect = 7.80e-15
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 19  SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
           S + IN  +S ILG N S   LN++A S+GC++  WP  YLGLP     ++L F  PV++
Sbjct: 340 SGMKINKAKSCILGINFSIETLNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLD 399

Query: 79  KVEKKLHCWSCSHISKGCRITPIQA 103
           KVEK+L  W  + +SKG R+T IQA
Sbjct: 400 KVEKRLQRWKRACLSKGGRLTLIQA 424

BLAST of CsGy1G012915 vs. NCBI nr
Match: VVA20479.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 80.1 bits (196), Expect = 8.23e-15
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 19  SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
           S + IN  +S ILG N S   LN++A S+GC++  WP  YLGLP     ++L F  PV++
Sbjct: 691 SGMKINKAKSCILGINFSIEALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLD 750

Query: 79  KVEKKLHCWSCSHISKGCRITPIQA 103
           KVEK+L  W  + +SKG R+T IQA
Sbjct: 751 KVEKRLQKWKRACLSKGGRLTLIQA 775

BLAST of CsGy1G012915 vs. NCBI nr
Match: BBN69274.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 80.1 bits (196), Expect = 8.28e-15
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 19  SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
           S + IN  +S ILG N S   LN++A S+GC++  WP  YLGLP     ++L F  PV++
Sbjct: 470 SGMKINKAKSCILGINFSIETLNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLD 529

Query: 79  KVEKKLHCWSCSHISKGCRITPIQA 103
           KVEK+L  W  + +SKG R+T IQA
Sbjct: 530 KVEKRLQRWKRACLSKGGRLTLIQA 554

BLAST of CsGy1G012915 vs. NCBI nr
Match: VVA30963.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 79.3 bits (194), Expect = 1.34e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 15  FESCSDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQ 74
           F + S + IN  +S ILG N S   LN++A S+GC++  WP  YLGLP     ++L F  
Sbjct: 32  FCNVSGMKINKAKSCILGINFSIEALNNMAGSWGCEVGCWPMVYLGLPLRGNPRALNFWN 91

Query: 75  PVIEKVEKKLHCWSCSHISKGCRITPIQA 103
           PV +KVEK+L  W  + +SKG R+T IQA
Sbjct: 92  PVKDKVEKRLQKWKRACLSKGGRLTLIQA 120

BLAST of CsGy1G012915 vs. ExPASy TrEMBL
Match: M5X4S0 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.15e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 19  SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
           S + IN  +S ILG N S+  LN++A S+GC++  WP  YLGLP     ++L F  PV+E
Sbjct: 450 SGMKINKAKSCILGINFSTEVLNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVME 509

Query: 79  KVEKKLHCWSCSHISKGCRITPIQA 103
           KVEK+L  W  + +SKG R+T IQA
Sbjct: 510 KVEKRLQKWKRACLSKGGRLTLIQA 534

BLAST of CsGy1G012915 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.18e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 19   SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
            S + IN  +S ILG N S+  LN++A S+GC++  WP  YLGLP     ++L F  PV+E
Sbjct: 1006 SGMKINKAKSCILGINFSTDVLNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVME 1065

Query: 79   KVEKKLHCWSCSHISKGCRITPIQA 103
            KVEK+L  W  + +SKG R+T IQA
Sbjct: 1066 KVEKRLQKWKRACLSKGGRLTLIQA 1090

BLAST of CsGy1G012915 vs. ExPASy TrEMBL
Match: M5WZA0 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020022mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.59e-15
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 19  SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
           S + IN  +S ILG N S   LN++A S+GC++  WP  YLGLP     ++L F  PV++
Sbjct: 845 SGMKINKAKSCILGINFSIEALNNMAGSWGCEVGCWPMVYLGLPLEGNPRALNFWNPVVD 904

Query: 79  KVEKKLHCWSCSHISKGCRITPIQA 103
           KVEK+L  W  + +SKG R+T IQA
Sbjct: 905 KVEKRLQKWKRACLSKGGRLTLIQA 929

BLAST of CsGy1G012915 vs. ExPASy TrEMBL
Match: M5WPQ5 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.61e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 19   SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
            S + IN  +S ILG N S+  LN++A S+GC++  WP  YLGLP     ++L F  PV+E
Sbjct: 957  SGMKINKAKSCILGINFSTEVLNNMAGSWGCEVGCWPMIYLGLPLGGNPRALNFWNPVME 1016

Query: 79   KVEKKLHCWSCSHISKGCRITPIQA 103
            KVEK+L  W  + +SKG R+T IQA
Sbjct: 1017 KVEKRLQKWKRACLSKGGRLTLIQA 1041

BLAST of CsGy1G012915 vs. ExPASy TrEMBL
Match: M5WKV4 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.15e-15
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 19  SDLSINHKRSEILGTNLSSTELNSIADSFGCKISSWPNTYLGLPFHVKSKSLMFCQPVIE 78
           S + IN  +S ILG N S+  LN++A S+GC++  WP  YLGLP     ++L F  PV++
Sbjct: 457 SGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 516

Query: 79  KVEKKLHCWSCSHISKGCRITPIQA 103
           KVEK+L  W  + +SKG R+T IQA
Sbjct: 517 KVEKRLQKWKRACLSKGGRLTLIQA 541

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_009335445.19.40e-1645.45PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
VVA31869.17.80e-1547.06Hypothetical predicted protein, partial [Prunus dulcis][more]
VVA20479.18.23e-1547.06Hypothetical predicted protein, partial [Prunus dulcis][more]
BBN69274.18.28e-1547.06TatD related DNase [Prunus dulcis][more]
VVA30963.11.34e-1446.07Hypothetical predicted protein, partial [Prunus dulcis][more]
Match NameE-valueIdentityDescription
M5X4S01.15e-1548.24Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
M5WJ761.18e-1548.24Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
M5WZA01.59e-1547.06Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
M5WPQ51.61e-1548.24Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU... [more]
M5WKV42.15e-1547.06Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 15..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G012915.1CsGy1G012915.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity