CsGy1G012100 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G012100
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA ligase 1
LocationGy14Chr1: 7607377 .. 7613168 (+)
RNA-Seq ExpressionCsGy1G012100
SyntenyCsGy1G012100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACGGTTCTCCATCTTCAATTCCTAAGTTTTTTCTTCAACTTTCATCAAGATGGGGAACATCAAAATTCCTACTGCTAAAACAAGATCCAGGAAGCGAGTCTCCGACACCGATCTCTCGAGCTCCGATCAAAGGAAGCAAACCAACGATGATATCGACCTTGATCTCGACCTTTCCGAGTACGCACTATTTTCTTTTTTCCATTTCTGTTCCACTTTCTGGTGATGTTTTGGAGTATCTTAACAATGATGTTTACGGTTTGTAGCGATCTTAAAGGAATAGTGTCGGCGTTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCTGAAGAAGAATGAAGAGACGATCTCAAGGTAATTTGAGTGGTTTTGTTCGATCGGTACTTTTATTGACTCGAGTCTGGAGCTGCTGAAATTTTGTGTTCTTGTATATTTATTTCCGATTCTCGAATTTCTTTGTACGGCTGCTCATTTATACCTTCGTTTTTCTTCTTCTGGTAGAATTGACCTGGCCTTACTCGTAGTTTGGTTTTATGATTTGTTTGATGTGATTCATTATAAACTTGAAATGATAGCCTGTTCAAACTTAGTTTACTGGATCAGACTTGCTTCGTCTCACCGTGTCTGTCAAACATTTTACCGTTTTCCAACTTCAATCCATGCCGCTTTTTATTGACTGAGGAGTTCATTTATTTTCTGAGCCGATACTCTTCTTGTCTCGCACTAGAACAATGTTTTAAATGTTAATTTCATGTTACTGACAGTGTAGCGACTGAGATGAGAACAATGATTGAGGAGGTGAAATCTAAACTTGAGAAGGACAGGTAGATTTTAGAACTATACAGAGTTCTGATGTTGCTTGCTTCAATTTTTGGTTATTAGTTATAAACGAATGAATGCAATTTAATTCCTCCAACCAATATCAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGGTTGGTGGATAACCACGACTTGAATTAGAGGCCAAGCGCAAATTTGAAGTCATTATATTTCGTTTCTAGTTACATTTCATTAATGCATTTTCCATATGTTGTGTTAAAATCAATACGGCTTCTTTATAGTGTGAAAACTGTTTGAAGGACGAGACTGCAAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTTCAGGCCATAAAAGGTAACATCCACTTCGAGTATTATTGTCAGAAATGTGCATTATTTAATATTTACTACTGCTCTGACTAATTTTCATTTTATTTATAAAATATCAACTGGAGCAAGACCTTTATCATGAGTAAATCCTTACCATGCTTTATAATTTTCCAAGATCGCATTCACGAAGTTAGGTTTCATTCCATAGCATAGAAGAATCCTCAATCTTTGAGAGACATCATAGTGGTGAGTGGCAATTGAAGCTTTGACCATGGAATTAGGTCCTCAACTACAATATGTGTGTTCCATCGATACTAGTAGCTTTGCCTTTTGGAATCCTTACTAAATGTGTATGATATATTGGTATTGAAGAACCTTTCACTAGTTGGTTGAAAATTTCAAGTTAATTTCATTTAACTACTACCAATCTATCAGATATTCTGGTATATTCACTATGGGCCTATGATCTCAAACCCTTGGGAGCTCTAAGAAAAGCCACCTCTTTCTTCTTCAAGGCGGTTCTTTAAACATATTTTCCTAAATCAAGATACTGTTTGGCTTTGGCAGATACCATTTCAAAATTTGAAGAGGAGAAAGAAAGGCTGTTCGCGAAATATGAACAACTGAGTAAGCAAGAAGTCATTGATCAATCAGATCGAAACGTTTTATGATGATTATTATCCAATTCCCTTCGTCTTTGTAACAGGAAAGAGAGAAAGGAGCTTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAAGAGTCTTTGAAAAGGAAAAAGCAGGTATAGTACGACTTGTAATTCATAAAATCAGAACTCAACCAAACGCCTTCCACCTTTATGCTAATGGAAATAGGATTTGGAACATAGGATGACAAGACTTTCAGCCTTTTGAGGAAGACTCTTGGTTCATTTCTTGATACTGGCTCAGATGAGGACTTCCCAGCTGATGATTGAAAGGTATTAGTGGATTGAGAAACATTCAATAATATGATTACTCTGCATCACTCTTTTTAGTACTAAAAAATAGGTCTTCTCTCCTCTTTTGCAAACTATTTGATGCAATTATCTAGTCTACATTCTAGTAGACATATTTCTGTGATCCTCTCTTTGAGGATTAGCTTTCTTTATGGTTTGGATTGTTGAAATACAATCGAGTCATAAGGGTCATTTTCTTAACTTTAATGGTTGGCCTATGGTTGTAGCCGCTCTGCCTCTTTAAAAAATAGTTACCTTCTTCTGCAAGTTGTAATGTTACGATTGCTTTGAGAAAAATCTTTAAGAACTCCAAAACGAAAGTTTGAACTTGAAACAGAGCAGAAAATTTTAATTCTAAATCACCCCACACCATTTCAAATCCGAATTTTAAACAATTTCTATTCCAATATTAGTTTTGAGAGGCCGAAATTTCAACTTTTCAGTAAGATATGGATGGATGCTAGAAGGGCAATTGCATTGTCCCTGTCAAGGCATATTTGACAATCTTGTTTCTTTATATAAATTCAATATGCTATTAGACCTTATATCTACACTATGGACCCAACATTCACTGCCTCTTTCGAAAGCAGAGTCCTCGTTTACCAAAGTTAAATTATTAAACATTTAAATTTAAGATTGGAACGAAAAGTGAAAATGCTAATGAGAAAAACATACGCCTAATATCTTAAAGGATCATCAAACTTAACTATCATAGATAATAAAATATAGACGGTTCATCTCAATAAATTACACCTCAACAATTTGACAACAAAAAAGATTCATCATTTACAAATTACAATTAAGTACACCTCAGAGATTGGCAGCAACTAATAAGGCTCCAATCAGCAGCATTAAAAAAAATGAACATAAAGCAAGAAGTCAAGTCACAAGTCAAAAAAACTTAAGATAAAAAGAAAAAAAACGTTAGAAGTTGGGAAGGTGAGTTCCTAAGTTTCTTTACATAAACTCAATAGCTAATAATAAAGAAACAAAAGAGGTAGTAATGATTGATAGTGTTCTCTTTTCCTTCTCTCTGCCTGCTGATTAAGGCTGCAACGGAAAAGAAAAACTCAGAAAATGAAACCTCTTTTCCTAAAAGAAACTCAGAAAAACAAATTCTATTGGACAAAGTTGGTAGGAGGGGCTGCTTGTCCCTGGTGAACAGACCACGGTGGCCGTCTATTATGAACCTGCATACCCATTTAAATCCGTCAGAGGCTAAAATTTACTGTCAGTCAGGGTTTCTCATTCATACAATTAATAAACAATCAAGCTTCAAAGCCAAGAAAGAGTTGAAATTATACCAAATCATCACCCTTGTTTCCCTAGAAAATGAAGAGCTTTTATATACATATACGTATTTAAGGAATGACATTTTGAAAATATTAGAATCAAATTGAGGCAAATTTAAGAGTATAAAGACTATTTTGAGTATTCTAAAAATAGAGAAACGTGAGTCAATGTTGAAAGTACTTGGACCGAAGTACTACTAAAACTATATATATATATATTTTTTCAAAGAGTTCTAATGCTATCAATTGGCATGAATTCGGTAAGCATCTACTTCGATCCATATTGCACATTACAATATAATTCCATCAAACAAGGAGACTGTAGAAAAATGGCTTCTGCTCCATGGTCCTTGCCAACACATTGAGTGATGGGAACTGGAAGGATTAGTTTCAACACATCCATGCTTTATCAGATTTTCTTCTAGACAAGGAACAAACTTATCACCCAATGATTAAAGAAAAATCTCGTTTCCAGCAAATCATGCTTCAACATTGAATGAATGAGACAACCAGAAAGATTTGACTCCACTGTAAATATTTTCCTAGAAAAAACTTTGCCAGAATGTAAATTGACATACCCCAATTTCTGTCACACTGGTACACGAGGAACACCTAACTGATGATGCTCCATATGGGTACATAAGCAACACTGCACAAGAACCGCATTTAACTTGTCCAACCTCGTGAGCTGGAAAGAGAATGTAAGGTATTAATAAAAGAAAAGGAAAAGTTGAATCATAAGACATTGACAGCAAGTTGTGATGAAGACTTCTTGAGTCGATGTTGAATAGTAAATCATGAAAAAAAATGACAAAGTAGTGATCAATTGGATTTCAGGCTATGAACAATTATTTAATTTATAAACTTGACTAGTGTTGGCTTGTCCCAAGGCTAGGACGATGGAATTCAGCAATTATAATAGGTGGCTCCGACAACAAGGGTGAGGATAACCTGAATGCAGGAATGAGGGAAATTTATTTAGATTTGAATGTCTGTAAGGTGGCTAAACTCATCTATCCCTCATCTGAAAAATATTGTAGATCCTACAATACTTGGTTTTATGTAGAACATTAATGTCTGGAGGCACAATCACATAACGTAAATCATTAACACGATAACTAGTTTCCTCAATTATTACATATAGCTCAAAAGAAAGTAATCCACAGGCACCACCCAGCAGGCCAGCACTACCACGTGAAACAAATATTCAAAACTACAGCCAAACAATCAACCCGCTAATGAAATAGGAAGCAGTCGAAAGAAAACAGATGTACAAGGGCATTTTGGAACCAACATAGACATTCCTAGGAATTGGTGAAAAATTAGAAAAAGGCTAATGGCATATGAACAAGACAACTTTTAAGAAAGAAAATGATAGTAAAAACTAAAAAGAAGGAAGGAAAGAGAAGGAACCTTCTAACACAAAGTTAACTGTTGAACAGCAAGAGCATTGAACATATCTGGCTCCCTTTAAATACTTAAGCAGGCGACGGCATGTACCACAGACCATTTGTGCCATGTCAGCTGCTGATCAAAACGTTTTCAAATGAGATATTTTAAGTAAAGTACATATAATGACAATATTTGGGACTTGCAATATAACATGCTAACAGGAATGAGGTTTTGACTGAAATTTGGTTGCACTAATATCAAATGATATGTATTCTATAAACAATGAAAACTAACATTTTGCTTAAGTCGCAACAAAATCACTAACCAAAGTTAAATTGTTGTCCATTCACGATCGCAGGTTTTCATCTATCGCGAATGGATGAGACCCCGAACAAGATTTCAGGTTTTAGAAAACTCATAGGATCACAAAATTTAAACAATAGGCAAAAGTTTGAATTGTTATGAAAAAATTGGGATGTGTATTGGAATCGTGTTCAAGGTCTCATCAATTTGCAAAGTTGCAAACCCGCAACAGAAAATGGGCAGTAAGGAGAGGTTAAGTAGAGTACTGTGTCTGCAAAATGTTAATTTTCATTGTTTTTCAGAATCTGGATCATTTGACATTAGCCGATCTAAATTTGGGTCAATCATACAAAAAACTCAACAACAATCCTCTTAACTTCTCTGCACTTTTGGTTGGATGAGCATCGACTCCCTGAACTGAAACTATGTCTGAACTATAATTGTGTTTAAGCAGATTAATAACGCACAGTGCATAGATTCGAATTGGACAAATTTCAAAAAGAGTTTTCCTACTAAGTTAGGTTAACATATTCGGGAGTTACAAGCAGTGGGAAGAAACCACCCAATCAATTCGCTCACAAACACGAACACAAGAAAATATTGTCCAAAAATTTACAAAAGAAAAATGTCAGCTTAAGTTTTTAAAG

mRNA sequence

GAACGGTTCTCCATCTTCAATTCCTAAGTTTTTTCTTCAACTTTCATCAAGATGGGGAACATCAAAATTCCTACTGCTAAAACAAGATCCAGGAAGCGAGTCTCCGACACCGATCTCTCGAGCTCCGATCAAAGGAAGCAAACCAACGATGATATCGACCTTGATCTCGACCTTTCCGACGATCTTAAAGGAATAGTGTCGGCGTTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCTGAAGAAGAATGAAGAGACGATCTCAAGTGTAGCGACTGAGATGAGAACAATGATTGAGGAGGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAGACTGCAAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTTCAGGCCATAAAAGATACCATTTCAAAATTTGAAGAGGAGAAAGAAAGGCTGTTCGCGAAATATGAACAACTGAGAAAGAGAGAAAGGAGCTTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAAGAGTCTTTGAAAAGGAAAAAGCAGGATGACAAGACTTTCAGCCTTTTGAGGAAGACTCTTGGTTCATTTCTTGATACTGGCTCAGATGAGGACTTCCCAGCTGATGATTGAAAGGTTTTCATCTATCGCGAATGGATGAGACCCCGAACAAGATTTCAGGTTTTAGAAAACTCATAGGATCACAAAATTTAAACAATAGGCAAAAGTTTGAATTGTTATGAAAAAATTGGGATGTGTATTGGAATCGTGTTCAAGGTCTCATCAATTTGCAAAGTTGCAAACCCGCAACAGAAAATGGGCAGTAAGGAGAGGTTAAGTAGAGTACTGTGTCTGCAAAATGTTAATTTTCATTGTTTTTCAGAATCTGGATCATTTGACATTAGCCGATCTAAATTTGGGTCAATCATACAAAAAACTCAACAACAATCCTCTTAACTTCTCTGCACTTTTGGTTGGATGAGCATCGACTCCCTGAACTGAAACTATGTCTGAACTATAATTGTGTTTAAGCAGATTAATAACGCACAGTGCATAGATTCGAATTGGACAAATTTCAAAAAGAGTTTTCCTACTAAGTTAGGTTAACATATTCGGGAGTTACAAGCAGTGGGAAGAAACCACCCAATCAATTCGCTCACAAACACGAACACAAGAAAATATTGTCCAAAAATTTACAAAAGAAAAATGTCAGCTTAAGTTTTTAAAG

Coding sequence (CDS)

ATGGGGAACATCAAAATTCCTACTGCTAAAACAAGATCCAGGAAGCGAGTCTCCGACACCGATCTCTCGAGCTCCGATCAAAGGAAGCAAACCAACGATGATATCGACCTTGATCTCGACCTTTCCGACGATCTTAAAGGAATAGTGTCGGCGTTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCTGAAGAAGAATGAAGAGACGATCTCAAGTGTAGCGACTGAGATGAGAACAATGATTGAGGAGGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAGACTGCAAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTTCAGGCCATAAAAGATACCATTTCAAAATTTGAAGAGGAGAAAGAAAGGCTGTTCGCGAAATATGAACAACTGAGAAAGAGAGAAAGGAGCTTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAAGAGTCTTTGAAAAGGAAAAAGCAGGATGACAAGACTTTCAGCCTTTTGAGGAAGACTCTTGGTTCATTTCTTGATACTGGCTCAGATGAGGACTTCCCAGCTGATGATTGA

Protein sequence

MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD*
Homology
[Close]
BLAST of CsGy1G012100 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 392 bits (1006), Expect = 1.03e-136
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]
BLAST of CsGy1G012100 vs. NCBI nr
Match: XP_008442500.1 (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa] >TYK26414.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 382 bits (980), Expect = 9.48e-133
Identity = 211/216 (97.69%), Postives = 214/216 (99.07%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR +TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]
BLAST of CsGy1G012100 vs. NCBI nr
Match: XP_011653172.1 (DNA ligase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 371 bits (953), Expect = 9.97e-129
Identity = 210/216 (97.22%), Postives = 210/216 (97.22%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKE      DETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKE------DETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 210

[Close]
BLAST of CsGy1G012100 vs. NCBI nr
Match: XP_038895277.1 (DNA ligase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 371 bits (953), Expect = 1.23e-128
Identity = 203/216 (93.98%), Postives = 210/216 (97.22%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+K PT K R RKRVSDTDL+SSDQRK+TNDD+DLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNMKTPTTKARVRKRVSDTDLTSSDQRKRTNDDLDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEMRTMIE+VKSKLEKDRQNFAKALSKSSKECENCLKDETAKF+A
Sbjct: 61  KDDQKKNEETISSVATEMRTMIEQVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFRA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLF KYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFVKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 216

[Close]
BLAST of CsGy1G012100 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 362 bits (929), Expect = 5.60e-125
Identity = 198/216 (91.67%), Postives = 210/216 (97.22%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP AKTR+RKRVSD DL+SSD+RK+TN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]
BLAST of CsGy1G012100 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 5.00e-137
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]
BLAST of CsGy1G012100 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 382 bits (980), Expect = 4.59e-133
Identity = 211/216 (97.69%), Postives = 214/216 (99.07%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR +TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]
BLAST of CsGy1G012100 vs. ExPASy TrEMBL
Match: A0A1S3B5C2 (DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1)

HSP 1 Score: 382 bits (980), Expect = 4.59e-133
Identity = 211/216 (97.69%), Postives = 214/216 (99.07%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR +TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]
BLAST of CsGy1G012100 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 362 bits (929), Expect = 2.71e-125
Identity = 198/216 (91.67%), Postives = 210/216 (97.22%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP AKTR+RKRVSD DL+SSD+RK+TN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]
BLAST of CsGy1G012100 vs. ExPASy TrEMBL
Match: A0A1S3B5U7 (DNA ligase 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1)

HSP 1 Score: 361 bits (927), Expect = 4.43e-125
Identity = 205/216 (94.91%), Postives = 208/216 (96.30%), Query Frame = 0 

Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR +TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKE      DETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKE------DETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 210

[Close]
BLAST of CsGy1G012100 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 237.7 bits (605), Expect = 9.0e-63
Identity = 124/182 (68.13%), Postives = 160/182 (87.91%), Query Frame = 0 

Query: 36  DLDLDLSDDLKGIVSALNQIKERAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQN 95
           +LD+D+S D KGI+SAL Q +E+AH+D  KK EE+ISSV+TE+++ I+E+KSKLEK+RQN
Sbjct: 31  ELDVDVSSDFKGIMSALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKERQN 90

Query: 96  FAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYE 155
           F+KALSKSSKECEN LKDE AKF+ L++KF K+KA HLQ +KDTISKFEE+KERL+ +YE
Sbjct: 91  FSKALSKSSKECENILKDEAAKFEELHKKFVKDKADHLQGLKDTISKFEEDKERLYMRYE 150

Query: 156 QLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLDT-GSDEDFPA 215
           QLRK+E+++I+EQEK C EK+AQLEESLK+KK+ DKTFS+LRKTLGSFL+   SDE+FP 
Sbjct: 151 QLRKKEKTMITEQEKFCTEKLAQLEESLKKKKRGDKTFSILRKTLGSFLENEASDEEFPP 210

Query: 216 DD 217
           D+
Sbjct: 211 DE 212

The following BLAST results are available for this feature:
BLAST of CsGy1G012100 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy1G012100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146600.11.03e-136100.00DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X... [more]
XP_008442500.19.48e-13397.69PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 iso... [more]
XP_011653172.19.97e-12997.22DNA ligase 1 isoform X2 [Cucumis sativus][more]
XP_038895277.11.23e-12893.98DNA ligase 1 isoform X1 [Benincasa hispida][more]
XP_023001751.15.60e-12591.67DNA ligase 1 [Cucurbita maxima][more]
BLAST of CsGy1G012100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRW75.00e-137100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1[more]
A0A5D3DS944.59e-13397.69DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B5C24.59e-13397.69DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1[more]
A0A6J1KJH32.71e-12591.67DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1[more]
A0A1S3B5U74.43e-12594.91DNA ligase 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1[more]
BLAST of CsGy1G012100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33793.19.0e-6368.13unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 169..189
NoneNo IPR availableCOILSCoilCoilcoord: 133..167
NoneNo IPR availableCOILSCoilCoilcoord: 75..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..35
NoneNo IPR availablePANTHERPTHR35295:SF1DNA LIGASE-LIKE PROTEINcoord: 9..216
NoneNo IPR availablePANTHERPTHR35295DNA LIGASE-LIKE PROTEINcoord: 9..216

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G012100.1CsGy1G012100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007131 reciprocal meiotic recombination
cellular_component GO:0099086 synaptonemal structure
molecular_function GO:0016874 ligase activity