CsGy1G009680 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G009680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 5993396 .. 5993805 (-)
RNA-Seq Expression	CsGy1G009680
Synteny	CsGy1G009680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAGTAATCCGAACAGAACCGGCGCCCAGTCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

mRNA sequence

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Coding sequence (CDS)

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Protein sequence

MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEEKVPVETWIDFKISTAVALSLC*

Homology

[Close]

BLAST of CsGy1G009680 vs. NCBI nr
Match: KGN64423.2 (hypothetical protein Csa_014303 [Cucumis sativus])

HSP 1 Score: 179 bits (453), Expect = 2.07e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60
          MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL
Sbjct: 1  MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60

Query: 61 EKQARREENEEKVPVETWIDFKISTAVALSLC 92
          EKQARREENEEKVPVETWIDFKISTAVALSLC
Sbjct: 61 EKQARREENEEKVPVETWIDFKISTAVALSLC 92

[Close]

BLAST of CsGy1G009680 vs. NCBI nr
Match: KAA0055339.1 (hypothetical protein E6C27_scaffold80G001830 [Cucumis melo var. makuwa] >TYJ99265.1 hypothetical protein E5676_scaffold248G004770 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 3.86e-37
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60
          MKGRE QKSHFQNSAGEDMNIDGQNENGEDTEKEN MD+N LAVSGEASEFNHTRISGQL
Sbjct: 1  MKGREGQKSHFQNSAGEDMNIDGQNENGEDTEKENSMDDNSLAVSGEASEFNHTRISGQL 60

Query: 61 EKQARREENEEK 72
          EKQARREENEEK
Sbjct: 61 EKQARREENEEK 72

[Close]

BLAST of CsGy1G009680 vs. NCBI nr
Match: KAE8819804.1 (hypothetical protein D1007_02478 [Hordeum vulgare])

HSP 1 Score: 48.1 bits (113), Expect = 1.47e-04
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 14 SAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEEKV 73
          S  ED++ DG+ ++G++ E ++G+D+ G A   EA+E +   ++G LE+Q RREE+EE  
Sbjct: 28 STEEDLDADGEEQDGDEREVDDGVDDYGDAAGLEAAELHDPALAGDLEQQPRREEDEEHQ 87

Query: 74 PVE 76
          P E
Sbjct: 88 PHE 90

[Close]

BLAST of CsGy1G009680 vs. ExPASy TrEMBL
Match: A0A0A0LTW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 8.87e-49
Identity = 91/127 (71.65%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEE-----------------------------------KVPVETWIDFKIST 92
           EKQARREENEE                                   +VPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

[Close]

BLAST of CsGy1G009680 vs. ExPASy TrEMBL
Match: A0A5D3BLR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004770 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 1.87e-37
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60
          MKGRE QKSHFQNSAGEDMNIDGQNENGEDTEKEN MD+N LAVSGEASEFNHTRISGQL
Sbjct: 1  MKGREGQKSHFQNSAGEDMNIDGQNENGEDTEKENSMDDNSLAVSGEASEFNHTRISGQL 60

Query: 61 EKQARREENEEK 72
          EKQARREENEEK
Sbjct: 61 EKQARREENEEK 72

[Close]

BLAST of CsGy1G009680 vs. ExPASy TrEMBL
Match: A0A0A9CRB9 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.10e-05
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 15 AGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEE 71
           G D++ DG NE+GE+ E+++G+D +G    G  +E +H R  GQLE+Q RR+ +++
Sbjct: 30 GGVDVDADGDNEDGEEAEEDDGVDEDGDGAGGHVAELHHPRPRGQLEQQPRRQHHKQ 86

[Close]

BLAST of CsGy1G009680 vs. ExPASy TrEMBL
Match: A0A0A9S1K0 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.11e-04
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 15  AGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEEK 72
           AG D+++ G +E+GE+ E+E G+D  GLA   EA+E +    + QL++Q RRE++EE+
Sbjct: 43  AGVDVDVAGDDEDGEEDEEEEGVDGGGLARHAEAAEVDPAVRTRQLDEQPRREQHEER 100

The following BLAST results are available for this feature:

BLAST of CsGy1G009680 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G009680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64423.2	2.07e-56	100.00	hypothetical protein Csa_014303 [Cucumis sativus]	[more]
KAA0055339.1	3.86e-37	94.44	hypothetical protein E6C27_scaffold80G001830 [Cucumis melo var. makuwa] >TYJ9926...	[more]
KAE8819804.1	1.47e-04	41.27	hypothetical protein D1007_02478 [Hordeum vulgare]	[more]

BLAST of CsGy1G009680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTW0	8.87e-49	71.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1	[more]
A0A5D3BLR1	1.87e-37	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A9CRB9	6.10e-05	40.35	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9S1K0	8.11e-04	43.10	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CsGy1G009680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009680.2	CsGy1G009680.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015867	ATP transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0005347	ATP transmembrane transporter activity