CsGy1G005100 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G005100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RRM domain-containing protein
Location	Gy14Chr1: 3428981 .. 3432462 (+)
RNA-Seq Expression	CsGy1G005100
Synteny	CsGy1G005100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTATTATAGATCTGGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGTTGGTTTTCTTTCTCTCAGTTGTGTATTTAGTCATAATTTGGCTGGTTATGTATGTGGAGACAATTTGGATTGCTTGAATCATTACAACTTCACGCGTGCAGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGAGTAGTAGTTCTCTTGTGCATTCTGAACGTTCAATTATGTTTCAATTGTCGATATCTGGCGCTAACTGTTATCATTTGTTATTAAATTCAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATACTCTGTCTATTTTCTTCCAAACGAGTGTAATTGTTTTCTTCTGTGTTATGCATTATCCTCTTAATCGCCAAAATCCACTTCAAATGCCCATTTCTCTCATTCACTTCGATTTTGGTAATGCATACGATTAGCCTTCTTGAATTATATCTGATTTACTCAGCAACTCTAGCTGAAGACGGTAAATCCATCTATAAGAACTCTAAATAACTATAATCCACTCCAGAATTTGCGAGGTTTAATTCCTTTAACTGCCAGAGCAAGCCTTTCAGTATTTATGATATAAAATCACAGACATTATAACACACCAGTTTAGGCTTTACACAAAGGGGCAATAAACCTTGAAGTTCTCTATAATTTTAGCTAGAGAATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGCATTTAGAGGACATAAGGTAGCGTCCATCCAGATCCAGTTATTCTTAATCATTGCTTCCTTTCCGAACTGTGGAACATTATAACTGTTATACCTTCAAACGAAAAAAAATGAACTTCAATAGATAGTTAATAACTGAATGTTCATATAAGCATTAGGTATTCATAACCTTGTTTTATTGCATTGGTGAACGTGTATATCAGCAGATAGATTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCAAGTGACTGAACCTGCCCTCGCAGTTTCTGTTTTACCACATACAAAACCTTGGATGGAACTCACTAGAGCTTTGCAAATGATCTAAATATTGAATAGACATTGCCTCTTCCCCTGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTAGCGATCACTTACCATCGAAACTAAATAGTTCCAACTAACTTCGGCTAAGGGCAGAAGTGTTTAAAGCAAAACATTAGTGTTTTTAAAATTTCACAATGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTAAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCATATTATAAGTAAACCATAGGGGAGGCTTAGGAGGCCTATCAAATACCGCAACCAAAATATAAAATGTTTCTTGAATATTCGGCATGCTCCACATAACTGATTGTAATAAAATTCAGTACAATTTAATATGGACTTGGAAGAGAACTGATTAAAGATGGTTAAACCCTAATTTGTGGCTTGACTTGTCATAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAGTTTCAAACTCAAACCACACTATATTCAATATTCACGTTTATAGCTAAAAATTTGTGTATCCGAGTGCACAGTACCACTGTTAAATTTAAGTGTACTTTTTGGCCTCGAGGTTTCCTCCAATTTATAGTGACAGCTACGTTTGTCGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACCCTTCCCACCTCTTCTCATCGGGAAACATGAATTGATATGATATTCTCTTCTCGGATTCCATGGATAAAATTCCGATGCTTCCTAAAGAGAAAAAGGCTACTTTTGAAATCAAGCTTGTAGCTGGGAGGGTCTGATCTATGCCAACCAATTATAGAAGATTTTTGTTTTTATTTATTTATAGTAAATAAAAAGAAAAGAGAATCTGTGATGATCTTGTTGTCTTATCTTTTTTGGTGCATCTAATTTTCAATTACAGCAGCATCATGAACTAATAGGGGAAACTTTGATTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTTAGTGTATTTCAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAACCATCAGTGTAATGCATATTAAAACTGATAATTAATGATATTGACTTTGTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGAGGAATTTTCCCATGACTTGGGATCTGTATTTTGAGTTATATTACTCTAGTTGAGAGTACGGAAGTGAATAATCTAATTAGAGACGAG

mRNA sequence

TCGTATTATAGATCTGGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTTAGTGTATTTCAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAACCATCAGTGTAATGCATATTAAAACTGATAATTAATGATATTGACTTTGTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGAGGAATTTTCCCATGACTTGGGATCTGTATTTTGAGTTATATTACTCTAGTTGAGAGTACGGAAGTGAATAATCTAATTAGAGACGAG

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA

Protein sequence

MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS*

Homology

[Close]

BLAST of CsGy1G005100 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.9e-32
Identity = 70/118 (59.32%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 54  SARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S  C+S+  SSS       P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISS--CLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSEL 172
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of CsGy1G005100 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 74  SSPSSSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180
           F F+RYA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of CsGy1G005100 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 42/96 (43.75%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 78  SSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRY 137
           SS + +    + RL+++GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y
Sbjct: 284 SSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEY 343

Query: 138 ASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
            +EE    A++ M+G+ ++G +I V+VAK RS  RQ
Sbjct: 344 TTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of CsGy1G005100 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 66  LFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQG 175
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of CsGy1G005100 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 40/83 (48.19%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           RL+++GLSF T+E++LR AF+ FG+LVEV ++MDR++ R +G+AF+ Y +EE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 150 MHGKFLDGRVIFVEVAKSRSELR 173
           M+G+ ++G +I V+VAK+RS  R
Sbjct: 360 MNGQIINGWMIVVDVAKTRSRDR 382

[Close]

BLAST of CsGy1G005100 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 335 bits (860), Expect = 1.21e-115
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CsGy1G005100 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 300 bits (769), Expect = 7.85e-102
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSPS    PRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSPS----PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of CsGy1G005100 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 291 bits (744), Expect = 5.43e-98
Identity = 155/180 (86.11%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGL FTV AAPKPFFQ Q THH++I STET  RI SI+S+LAYSSTPLPFFS RKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFS+AC SSSPS S  PRRYTPSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSPLFSLACASSSPSPS--PRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGL+ENSS
Sbjct: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of CsGy1G005100 vs. NCBI nr
Match: XP_031743837.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Cucumis sativus] >KAE8652500.1 hypothetical protein Csa_013675 [Cucumis sativus])

HSP 1 Score: 286 bits (731), Expect = 3.94e-96
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CsGy1G005100 vs. NCBI nr
Match: XP_011649654.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 286 bits (731), Expect = 4.22e-96
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CsGy1G005100 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 335 bits (860), Expect = 5.87e-116
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CsGy1G005100 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 300 bits (769), Expect = 3.80e-102
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSPS    PRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSPS----PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of CsGy1G005100 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 271 bits (693), Expect = 1.49e-90
Identity = 148/180 (82.22%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGL F+  A P PFFQLQ+T +++I ST TRMRI+SIQSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLLFS--AVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFSV CVSSSPS S  PRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 61  ISDSPLFSVTCVSSSPSPS--PRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of CsGy1G005100 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.29e-88
Identity = 147/180 (81.67%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGL F+  AAP PFFQLQ+  ++ I ST TRMRI+SIQSKLAYS+TP PFFS +KT+S
Sbjct: 29  MTAGLLFS--AAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRS 88

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFSV CVSSSPS S  PRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 89  ISDSPLFSVTCVSSSPSPS--PRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 148

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 149 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of CsGy1G005100 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 258 bits (659), Expect = 3.37e-85
Identity = 138/155 (89.03%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSPS    PRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSPS----PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFL 155
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of CsGy1G005100 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-33
Identity = 70/118 (59.32%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 54  SARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S  C+S+  SSS       P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISS--CLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSEL 172
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of CsGy1G005100 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 88  STRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAI 147
           S +L++S LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + SE++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 148 EGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 181
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of CsGy1G005100 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 74  SSPSSSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180
           F F+RYA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of CsGy1G005100 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 66  LFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQG 175
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of CsGy1G005100 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-17
Identity = 42/96 (43.75%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 73  SSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGF 132
           S     S SP     + +L+I+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+
Sbjct: 268 SRDQDDSESPP--VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 327

Query: 133 AFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSR 169
           AFL Y +EE +  A++ M+GK ++G +I V+VAK++
Sbjct: 328 AFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361

The following BLAST results are available for this feature:

BLAST of CsGy1G005100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	3.9e-32	59.32	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	1.5e-18	46.30	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q6YWP9	2.1e-17	43.75	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q9FFZ6	2.1e-17	45.87	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
C0HFE5	2.7e-17	48.19	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]

BLAST of CsGy1G005100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649648.1	1.21e-115	100.00	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]
XP_008439477.1	7.85e-102	88.89	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_038895072.1	5.43e-98	86.11	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_031743837.1	3.94e-96	100.00	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Cucumis sat...	[more]
XP_011649654.1	4.22e-96	100.00	organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Cucumis sat...	[more]

BLAST of CsGy1G005100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB8	5.87e-116	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A1S3AYF6	3.80e-102	88.89	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A6J1KDG6	1.49e-90	82.22	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A6J1GCJ4	1.29e-88	81.67	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A5A7SXY0	3.37e-85	89.03	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of CsGy1G005100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	2.8e-33	59.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.0e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.0e-19	46.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.5e-18	45.87	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	8.2e-17	43.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..163 e-value: 4.9E-25 score: 99.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..160 e-value: 8.3E-19 score: 67.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..167 score: 19.58716
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 90..163 e-value: 0.0031 score: 26.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 54..174 e-value: 2.7E-29 score: 104.1
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..179
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 3..179
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 75..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G005100.1	CsGy1G005100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding