CsGy1G004015 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G004015
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 2549709 .. 2550035 (-)
RNA-Seq Expression	CsGy1G004015
Synteny	CsGy1G004015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGTAGCTCATACAACAGCATCTCAAGCAGGCTTTTAACTATCTACCCAATTACTCAGACTGGTAAATTTCTATTGCCTAGTCCTTAAATCTATGGAGGGTTAACAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

mRNA sequence

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGGTTAACAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

Coding sequence (CDS)

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGGTTAACAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

Protein sequence

MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVARCIADYLLQSSNRSKP*

Homology

[Close]

BLAST of CsGy1G004015 vs. NCBI nr
Match: KGN63850.1 (hypothetical protein Csa_014060 [Cucumis sativus])

HSP 1 Score: 158 bits (400), Expect = 8.03e-49
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60
          MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA
Sbjct: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60

Query: 61 RCIADYLLQSSNRSKP 76
          RCIADYLLQSSNRSKP
Sbjct: 61 RCIADYLLQSSNRSKP 76

[Close]

BLAST of CsGy1G004015 vs. NCBI nr
Match: TYK28466.1 (hypothetical protein E5676_scaffold629G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.10e-13
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRG 41
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRG 41

[Close]

BLAST of CsGy1G004015 vs. NCBI nr
Match: KAA0058113.1 (hypothetical protein E6C27_scaffold274G004220 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.93e-13
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRG 41
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRG 41

[Close]

BLAST of CsGy1G004015 vs. ExPASy TrEMBL
Match: A0A0A0LPM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024820 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 3.89e-49
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60
          MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA
Sbjct: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60

Query: 61 RCIADYLLQSSNRSKP 76
          RCIADYLLQSSNRSKP
Sbjct: 61 RCIADYLLQSSNRSKP 76

[Close]

BLAST of CsGy1G004015 vs. ExPASy TrEMBL
Match: A0A5D3DXH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.31e-14
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRG 41
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRG 41

[Close]

BLAST of CsGy1G004015 vs. ExPASy TrEMBL
Match: A0A5A7UQG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004220 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.33e-14
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRG 41
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRG 41

The following BLAST results are available for this feature:

BLAST of CsGy1G004015 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G004015 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63850.1	8.03e-49	100.00	hypothetical protein Csa_014060 [Cucumis sativus]	[more]
TYK28466.1	1.10e-13	82.93	hypothetical protein E5676_scaffold629G00990 [Cucumis melo var. makuwa]	[more]
KAA0058113.1	1.93e-13	82.93	hypothetical protein E6C27_scaffold274G004220 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy1G004015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPM9	3.89e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024820 PE=4 SV=1	[more]
A0A5D3DXH9	5.31e-14	82.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQG9	9.33e-14	82.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsGy1G004015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004015.1	CsGy1G004015.1	mRNA