Cp4.1LG20g07490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L34
Location	Cp4.1LG20: 6076749 .. 6078194 (+)
RNA-Seq Expression	Cp4.1LG20g07490
Synteny	Cp4.1LG20g07490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTGATTCAAACGCATATCAGCCGTCAGATCCAGGGCATTGGAGACTGAAAAACCCTAATATACCGATATTCTTCAGTCCCGTGTTGGTTCTATTGTTCCCTCTTACAATTCTTCGGCAACAGCTTTAGAGGGTTCCGACGAGCGGAGAAGATGGTCCAGCGGCTCACTTACCGTAAGCGGCACAGCTATGCCACCAAATCCAACCAGCACCGCGTCGTCAAGACCCCCGGTAAATACACATTGTTCTTCTTCTGTATCATGGAGCATTCTATGAATTACATCTCTTATCGTTCGTTGTTTTGATGAATTTCTCGTATGCTTCTGCATTTATTTGCAAGATCTGGTTTCAGTTGCTTAATCGATGATGTGTGGTTTGATTCTTAGGTGGGAAGCTTGTGTATCAGACCACGAAGAAGAGAGCCAGTGGTCCTAAATGTCCTGTAACTGGAAAGAGAATTCAAGGGGTGCGTATACGTATTTATTTTGTTTTGCCTATTGTTTTCATTGAATAAGTTAGCATCAGAGATGTAGATTTGAATTTTGGCAACTTTTTTTGGTTTCGTTTTCGAGTATTGTGTATTTTGTGGAGTAATTTTTGTAAGTTTTAGCTGGTGGACTTGTGATGTCCTCGTATGCTAATGCTCTTTTGCTTGTGGAATTTGATGTTCATCGTAGTCAATCTAGTTTTTGCGGATATTCTTCCTGATTTCTTCATGTGTAACTAGTCGCTAATTTGTTGGCTTACAGTCAGCCATTGTTGTTTTGTATTTCCTTTATTTTTCACAATCACGGTGTTCGTTTTGTTCAAATTATGGTGAATTTTAGAACTGGTTCCCACAATATTTCAATCTAATTGATTGTTTGTATCTGATGTTATACTGATTTCCTTTAACAGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGGCTGGCTAGGAACCGTAGGACTGTAAACCGTGCCTATGGTGGTGTACTGTCTGGCGGTGCTGTTAGAGAGAGGTGTGTTTCTTTACTCTTTGATGTTCATTACTGCATTGCGTTTTCGTCTCAGTATTGATGGTTGCTTGAGCATTTCTAAAGATCTTCTCTTGATGTTGTAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAGGAAAAACTAGCTTCCAAGAGCTAGAATGTCTGGTTTTAACGCATGAACTCTTTTCCATTTTATATATGCTGGATGAAAATTTTGACTTGGATCAATGACTTGTTAATTTAAATGATTTTGGAATTAGCTTCGTTCTTGTAGTTGCATCATTATTTTGAAGTTTCTTCTGCTAGAATATTCAGTCTATCATCATTGTTTATGCTGATTTTGCTTCATTTGCATTCACACATCTAGAATATGGTCTTGGGGTTATTCTTCCTCATTCTTT

mRNA sequence

CGTTGATTCAAACGCATATCAGCCGTCAGATCCAGGGCATTGGAGACTGAAAAACCCTAATATACCGATATTCTTCAGTCCCGTGTTGGTTCTATTGTTCCCTCTTACAATTCTTCGGCAACAGCTTTAGAGGGTTCCGACGAGCGGAGAAGATGGTCCAGCGGCTCACTTACCGTAAGCGGCACAGCTATGCCACCAAATCCAACCAGCACCGCGTCGTCAAGACCCCCGGTGGGAAGCTTGTGTATCAGACCACGAAGAAGAGAGCCAGTGGTCCTAAATGTCCTGTAACTGGAAAGAGAATTCAAGGGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGGCTGGCTAGGAACCGTAGGACTGTAAACCGTGCCTATGGTGGTGTACTGTCTGGCGGTGCTGTTAGAGAGAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAGGAAAAACTAGCTTCCAAGAGCTAGAATGTCTGGTTTTAACGCATGAACTCTTTTCCATTTTATATATGCTGGATGAAAATTTTGACTTGGATCAATGACTTGTTAATTTAAATGATTTTGGAATTAGCTTCGTTCTTGTAGTTGCATCATTATTTTGAAGTTTCTTCTGCTAGAATATTCAGTCTATCATCATTGTTTATGCTGATTTTGCTTCATTTGCATTCACACATCTAGAATATGGTCTTGGGGTTATTCTTCCTCATTCTTT

Coding sequence (CDS)

ATGGTCCAGCGGCTCACTTACCGTAAGCGGCACAGCTATGCCACCAAATCCAACCAGCACCGCGTCGTCAAGACCCCCGGTGGGAAGCTTGTGTATCAGACCACGAAGAAGAGAGCCAGTGGTCCTAAATGTCCTGTAACTGGAAAGAGAATTCAAGGGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGGCTGGCTAGGAACCGTAGGACTGTAAACCGTGCCTATGGTGGTGTACTGTCTGGCGGTGCTGTTAGAGAGAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAGGAAAAACTAGCTTCCAAGAGCTAG

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS

Homology

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-56
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.8e-56
Identity = 113/120 (94.17%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.3e-55
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-54
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-53
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (580), Expect = 6.49e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. NCBI nr
Match: XP_010044743.1 (60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449442.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449623.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030550747.1 60S ribosomal protein L34 [Rhodamnia argentea] >XP_030550759.1 60S ribosomal protein L34 [Rhodamnia argentea] >KAF7851679.1 hypothetical protein BT93_L3193 [Corymbia citriodora subsp. variegata] >KAF7851688.1 hypothetical protein BT93_L3202 [Corymbia citriodora subsp. variegata] >KAF8021475.1 hypothetical protein BT93_G1807 [Corymbia citriodora subsp. variegata] >KCW86845.1 hypothetical protein EUGRSUZ_B03442 [Eucalyptus grandis])

HSP 1 Score: 226 bits (577), Expect = 1.86e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 226 bits (577), Expect = 1.86e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. NCBI nr
Match: XP_022938256.1 (60S ribosomal protein L34-like [Cucurbita moschata])

HSP 1 Score: 226 bits (577), Expect = 1.86e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKE+LASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKERLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. NCBI nr
Match: XP_022987206.1 (60S ribosomal protein L34-like [Cucurbita maxima])

HSP 1 Score: 226 bits (577), Expect = 1.86e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 228 bits (580), Expect = 3.14e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1)

HSP 1 Score: 228 bits (580), Expect = 3.14e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1)

HSP 1 Score: 228 bits (580), Expect = 3.14e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy TrEMBL
Match: A0A6J1JDI0 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 SV=1)

HSP 1 Score: 226 bits (577), Expect = 9.02e-75
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. ExPASy TrEMBL
Match: A0A059D9F6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV=1)

HSP 1 Score: 226 bits (577), Expect = 9.02e-75
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-56
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Cp4.1LG20g07490 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-55
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of Cp4.1LG20g07490 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-54
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Cp4.1LG20g07490 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRAYGGVLSGGAVRERII 93
          EYKRSRL+RNRRTVNRAYGGVLSG AVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	1.5e-56	95.00	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	5.8e-56	94.17	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	8.3e-55	91.67	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	4.1e-54	91.60	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	1.6e-53	90.83	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of Cp4.1LG20g07490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138175.3	6.49e-75	100.00	60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei...	[more]
XP_010044743.1	1.86e-74	99.17	60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal pro...	[more]
XP_038893923.1	1.86e-74	99.17	60S ribosomal protein L34-like [Benincasa hispida]	[more]
XP_022938256.1	1.86e-74	99.17	60S ribosomal protein L34-like [Cucurbita moschata]	[more]
XP_022987206.1	1.86e-74	99.17	60S ribosomal protein L34-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG20g07490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6I6	3.14e-75	100.00	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ...	[more]
A0A6J1HLN7	3.14e-75	100.00	60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=...	[more]
A0A6J1DF78	3.14e-75	100.00	60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV...	[more]
A0A6J1JDI0	9.02e-75	99.17	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 ...	[more]
A0A059D9F6	9.02e-75	99.17	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV...	[more]

BLAST of Cp4.1LG20g07490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	5.9e-56	91.67	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	2.9e-55	91.60	ribosomal protein L34	[more]
AT3G28900.1	1.1e-54	90.83	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	1.5e-43	91.30	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 13..26 score: 59.18 coord: 44..54 score: 50.0 coord: 26..43 score: 53.57 coord: 66..88 score: 44.72
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 2.5E-38 score: 130.2
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 4.5E-22 score: 79.5
None	No IPR available	GENE3D	6.20.340.10		coord: 39..120 e-value: 2.6E-36 score: 125.4
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07490.1	Cp4.1LG20g07490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome