Cp4.1LG20g07480 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	splicing factor U2af small subunit B-like
Location	Cp4.1LG20: 5939747 .. 5943056 (-)
RNA-Seq Expression	Cp4.1LG20g07480
Synteny	Cp4.1LG20g07480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGGTTCCGAATCTTCTAGACCCCAAAGTTTTCCATGAACATTCTAGAGGAAGGGAGAAGGGGACCCCATTCTTCTCGCTAAATTCCGTTTTTTCCTCATCGAAACGCCACATTTCTTCCTCTCTCTCACTCATCTTCAACCCCCAGCCCTAACTTCTTGCGAGTTTGATTTTCCAAATTTGTGGGGATCTGCGATTTCTCTTTCGGTGTCTGAGAGAGACGGGGAAGAATTCGAACGAACAATCATTGGTGTTACTGAGATCCGTGAGGCGTAATGGCGGAGCATTTGGCTTCCATATTCGGGACGGAGAAGGATAGGGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGACATGGTGATAGGTGTTCACGGTTGCATACGAAGCCTAGTATAAGCCCCACGCTTTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACCCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCAAGATCCAGGACCATTTTGAGGTAGACCTTGTTTTTAATTCCCGTGTTTCATAGTGCATATTTTTATCTTTTCAATCTTCTAACGTATTTGTTAATACGCATTTTTATCATGAATTATGAATATTTTTTGAGGTTGGATTGTTATTATCTGATTGTTTTATCATAATCTTGCGGTTATCTTAGAGATGGTTTAGTTTGGTTGATTTTCAAACGATCGTGCTATCTTCGATAGAGTAAGATATTGTTTGTTGATTTTTAGTGTCCTAATTTCCTTCTTTATGCTCTTGGCGTGGTTTGTAATTTCTGTTATTTTGAATAATCACGTTGGGTTGGTCGTTTCTTGTTGCGCTTAGATGAATTGTAGCTTAATTGTTGATCTGTGCATATTTCAGGAGTTCTATGAGGATCTATTTCAGGAACTGAACAAGTATGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCATATGGTAATACTGTCATCTTCGCCCATTGTTTGAAGGAAACTGATTTTCCAATCAGCCTTTCATTGTAGAATAGCTAATGAGTATTTATCTAATGCATTTAATTAGGTGGGCAATGTTTATGTTCAATTTCAAGAGGAGGAACAAGCTGCAAATGCTCTTCGGAATCTTAGTGGAAGATTCTATGCTGGTTAGTTGGAGTTTCCTGCCCCTGCCCCCATTTCCTTTATTTCTCTATTTTGTCATTCTTAGTTTTATGTTTTTTTCATTGTGTTTATACTTTTTGTATTCAGCTTTTGATTTTAAAATTGAACGTGTAACATAATGGAAAACTATTTCTTTCCAGGACGTCCGATCATTGTTGATTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGTGGTGGATATTGCAATTTTATGCATTTGAAGAGGATCAGTCGGTATATTTTCTTCACCACCTCCATTTTTTCCCTCTAAGATGCAAGCTATGTGTACTTCATTTGATAGCCATGATCTTTTCCTGTCTTGCAGAGAGCTGAGGCATGAACTGTTTGCAAGTTATCATCGAAGGCGTAGTCACAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGGAGTTATGAGGAACGCCATTATGGTCGGCATGGTCATAGTCGGAGGTATGATGAGAGAGATGCTTATCATGATAGTCGAAATAGGAGGCATAGGAGTACAAGCCCTGGTCATAGAGGAAGCAGAAGTCGTAGCCCACGAGGAAGGAAGAATCGAAGTCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGAGAAAAAGAACAACAAGAAAATTATAATAATGCTAATTCTGATGGCAACGAAAATAGCCATGAAAAAAGTTACAATGGTGATGTACAGTATGAAAATCAGACCTGTGGCTATAAGCAGCAGCAGCAGCAGCAGCAGAAGCCTCCTGAGCAAGGCTATGGTTACTGATCTGTCTTACCTAAACTTAGGTACTACTACCGAAGTTTCTGCTTGAGGTCTTGCATTCGTTTATTAAAATTTCCATAGTACTCTTATCCCAATTCGTCAGTAGTCTGCTGGTTCTAGTCATCTGATTTCCCTAACCTCTCTGTGATCTTTTCTTTGGCTCTTAGAGTGGATAACAGCAAGTTTTTTTTTTTTTTAAAGTGGATTGTTCAGGTACATGTCCAGCTTAGAGAATTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTAGAAAAAGAGATGAAAGGGAGAACCACTTACAAGATAGAACACACGAATTTGGCTAACAAGACATGATGCTTGAGAGTGTTCTTATCCCCTATTTGATATGATTGTTTACCCTTTGATGTGTGGACAGTTGACAATGTGTAGAAGGAAACCATCTAGCATACCAGAAGGTCCTCCAGTTAAGCTGTTGAGTCGATCTAGAAAGCATTTTAACTACAGAAAAAATTTAAAGCCAATTTTTTGGCACACTTTTTCTTGGTAGTGATTTGTTCTTGTTACCATGCATCAATTGCACGTATGCATTCTTCTAATATCTTCTATTTGATAGCAAATATGTATAATGATGTTACAGTCAGGGATTAAGACTGCTGCTCATGAGGACTTGTGAACGATCTCGTTATCATATAACGGTTTCTTTTCCCTTTGCATTACCTTTTTGTTGATATTAAAAAAAAAAAAAAAAGGTGATCTGATGATTATCTAAGTTTTGCAGGCGCAGGTTTCCCTGCTTCTAAGGTTGCCAAGCTAAGATGTGACCATGAAATTTTTGTACAGGTTAATATGGTCCACTGTGTAGGATGATTGGCTTTACAGGATCTGCAGGTAATGGCTTAGGAGAGCATGTGGGAGGAGGCGCAGGGCAAGCATTGATGTTGTGGCGTTGCAGGTTAGGGATGATGCTGAAACGTTTTGTATTTGTTCCATATATTCCTATTCAATATTCAATAGAAAGAGGGGAAATTCTTCAATGCCTTTTGTTGCTATATTTGGAAGATAGTTGTGTCAAAGTCTCTTCTTATTATGACGAAAAGGAACGTTATGGTGAACAGATGTTTGTGTTGCAATGGATAGCCCAAAGATATTTCATGTCATGTTTTTGAAAGCAGCCGTTTTTCGGTTTGAAAATTGATTTGGAGATTGCTTTCTCTCTATAATTCCCATAGACACCATTTTGGTTGGTTGCTACCTCGATTGACGTATGGTTTTTTAGTAGTGGCATTGCTAAATCATTGGAACTCTTGTTAAGATGTCTACAAAGCT

mRNA sequence

TAATGGTTCCGAATCTTCTAGACCCCAAAGTTTTCCATGAACATTCTAGAGGAAGGGAGAAGGGGACCCCATTCTTCTCGCTAAATTCCGTTTTTTCCTCATCGAAACGCCACATTTCTTCCTCTCTCTCACTCATCTTCAACCCCCAGCCCTAACTTCTTGCGAGTTTGATTTTCCAAATTTGTGGGGATCTGCGATTTCTCTTTCGGTGTCTGAGAGAGACGGGGAAGAATTCGAACGAACAATCATTGGTGTTACTGAGATCCGTGAGGCGTAATGGCGGAGCATTTGGCTTCCATATTCGGGACGGAGAAGGATAGGGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGACATGGTGATAGGTGTTCACGGTTGCATACGAAGCCTAGTATAAGCCCCACGCTTTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACCCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCAAGATCCAGGACCATTTTGAGGAGTTCTATGAGGATCTATTTCAGGAACTGAACAAGTATGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCATATGGTGGGCAATGTTTATGTTCAATTTCAAGAGGAGGAACAAGCTGCAAATGCTCTTCGGAATCTTAGTGGAAGATTCTATGCTGGACGTCCGATCATTGTTGATTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGTGGTGGATATTGCAATTTTATGCATTTGAAGAGGATCAGTCGAGAGCTGAGGCATGAACTGTTTGCAAGTTATCATCGAAGGCGTAGTCACAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGGAGTTATGAGGAACGCCATTATGGTCGGCATGGTCATAGTCGGAGGTATGATGAGAGAGATGCTTATCATGATAGTCGAAATAGGAGGCATAGGAGTACAAGCCCTGGTCATAGAGGAAGCAGAAGTCGTAGCCCACGAGGAAGGAAGAATCGAAGTCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGAGAAAAAGAACAACAAGAAAATTATAATAATGCTAATTCTGATGGCAACGAAAATAGCCATGAAAAAAGTTACAATGGTGATGTACAGTATGAAAATCAGACCTGTGGCTATAAGCAGCAGCAGCAGCAGCAGCAGAAGCCTCCTGAGCAAGGCTATGGTTACTGATCTGTCTTACCTAAACTTAGGTTAATATGGTCCACTGTGTAGGATGATTGGCTTTACAGGATCTGCAGGTAATGGCTTAGGAGAGCATGTGGGAGGAGGCGCAGGGCAAGCATTGATGTTGTGGCGTTGCAGTAGTGGCATTGCTAAATCATTGGAACTCTTGTTAAGATGTCTACAAAGCT

Coding sequence (CDS)

ATGGCGGAGCATTTGGCTTCCATATTCGGGACGGAGAAGGATAGGGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGACATGGTGATAGGTGTTCACGGTTGCATACGAAGCCTAGTATAAGCCCCACGCTTTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACCCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCAAGATCCAGGACCATTTTGAGGAGTTCTATGAGGATCTATTTCAGGAACTGAACAAGTATGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCATATGGTGGGCAATGTTTATGTTCAATTTCAAGAGGAGGAACAAGCTGCAAATGCTCTTCGGAATCTTAGTGGAAGATTCTATGCTGGACGTCCGATCATTGTTGATTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGTGGTGGATATTGCAATTTTATGCATTTGAAGAGGATCAGTCGAGAGCTGAGGCATGAACTGTTTGCAAGTTATCATCGAAGGCGTAGTCACAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGGAGTTATGAGGAACGCCATTATGGTCGGCATGGTCATAGTCGGAGGTATGATGAGAGAGATGCTTATCATGATAGTCGAAATAGGAGGCATAGGAGTACAAGCCCTGGTCATAGAGGAAGCAGAAGTCGTAGCCCACGAGGAAGGAAGAATCGAAGTCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGAGAAAAAGAACAACAAGAAAATTATAATAATGCTAATTCTGATGGCAACGAAAATAGCCATGAAAAAAGTTACAATGGTGATGTACAGTATGAAAATCAGACCTGTGGCTATAAGCAGCAGCAGCAGCAGCAGCAGAAGCCTCCTGAGCAAGGCTATGGTTACTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEEQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISRELRHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSYNGDVQYENQTCGYKQQQQQQQKPPEQGYGY

Homology

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BLAST of Cp4.1LG20g07480 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.6e-106
Identity = 207/291 (71.13%), Postives = 232/291 (79.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVD QG P+DP KIQDHFE+FYED+F+ELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFASY---HRRRSHSRSRSRSPYRHRSY-EERHYG------RHGHSRRYDERDAYHD 240
           R +LF  Y   +RR S SRSRS SP R R +  ER  G      RHG+ +R  +R   HD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 -SRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQ 281
                R R  SP     RSRSPR       VREGSEERRA+IEQWNRE+++
Sbjct: 241 RDGGGRRRHGSP----KRSRSPRN------VREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.7e-105
Identity = 204/290 (70.34%), Postives = 228/290 (78.62%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           G+DAQGNPIDP KIQ  FE+FYED+F+EL+KYGEIESL+VCDN ADHM+GNVYVQF+EE+
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAA AL+ L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K I R+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RHELFASYHRRR---SHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAY----HDSRN 240
           R  LF   HR R   SH RSRS SPY +R    R Y R   SR  D  D Y    HD   
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYR----RDYDRRSSSRSRDHDDYYRGGSHDYYR 240

Query: 241 RRHRSTSPGHRGS----RSRSPRGRKNRSPVREGSEERRAKIEQWNREKE 280
              R +S  HR S     SR     + RSPVR+GSEERRA+IEQWNRE+E
Sbjct: 241 GGSRRSSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNRERE 286

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 4.9e-105
Identity = 202/292 (69.18%), Postives = 228/292 (78.08%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQG P+DPRKIQ+HFE+F+EDLF+EL K+GEIESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RHELFASYHR-----RRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHD----- 240
           R +LF  Y R      RS SRSRS SP   R  + R       S R  +R+ Y       
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQE 283
           S  R  R    G RG R  SP+   +    REGSEERRA+IEQWNRE+E++E
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.2e-98
Identity = 193/320 (60.31%), Postives = 224/320 (70.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQG PIDP K+Q+HFE+FYED+++EL+K+GE+E+LNVCDNLADHM+GNVYVQF+EEE
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QA  A   L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I REL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERH---------------------------- 240
           R +L+     RRSH RSRS SP   R   +R                             
Sbjct: 181 RRKLYGG-RSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDGY 240

Query: 241 -----------YGRHGHSRRYDERDAYHDSRNRRHRSTSPGHRGSRSRSPRGRKNRSPVR 282
                       GR G   RYD    Y D   RRH S               R+ RSPVR
Sbjct: 241 RGGDSYRGGGGGGRRGGGSRYDR---YDDGGRRRHGSPP-------------RRARSPVR 300

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy Swiss-Prot
Match: Q01081 (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 253.1 bits (645), Expect = 4.5e-66
Identity = 128/218 (58.72%), Postives = 158/218 (72.48%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQEL-NKYGEIESLNVCDNLADHMVGNVYVQFQEE 120
             D     +   ++Q+H++EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+F+ E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 EQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISRE 180
           E A  A+ +L+ R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHG 218
           LR EL   Y RRR   RSRSRS  R R    R  GR G
Sbjct: 181 LRREL---YGRRRKKHRSRSRS--RERRSRSRDRGRGG 213

[Close]

BLAST of Cp4.1LG20g07480 vs. NCBI nr
Match: XP_023519661.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023519662.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023519664.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 648 bits (1672), Expect = 1.97e-234
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS
Sbjct: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           NGDVQYENQTCGYKQQQQQQQKPPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330

[Close]

BLAST of Cp4.1LG20g07480 vs. NCBI nr
Match: XP_022964867.1 (splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022964868.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022964870.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >KAG7019309.1 Splicing factor U2af small subunit A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 644 bits (1660), Expect = 1.33e-232
Identity = 327/330 (99.09%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS
Sbjct: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQ+NYNN+NSDG+ENSHEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQKNYNNSNSDGHENSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           NGDVQYENQTCGYKQQQQQQQKPPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330

[Close]

BLAST of Cp4.1LG20g07480 vs. NCBI nr
Match: XP_022970323.1 (splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970325.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970326.1 splicing factor U2af small subunit B-like [Cucurbita maxima])

HSP 1 Score: 634 bits (1635), Expect = 8.27e-229
Identity = 325/330 (98.48%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFASYHRRR HSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS
Sbjct: 181 RHELFASYHRRRGHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHRGSRSRSPRGRKNRSPVRE SEERRAKIEQWNREKEQ ENYNNANSDGNE+SHEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREESEERRAKIEQWNREKEQ-ENYNNANSDGNEHSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           NGDVQYENQTCGYKQQQQQQQ+PPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQQPPEQGYGY 329

[Close]

BLAST of Cp4.1LG20g07480 vs. NCBI nr
Match: XP_004139466.1 (splicing factor U2af small subunit B [Cucumis sativus] >XP_011654262.1 splicing factor U2af small subunit B [Cucumis sativus] >KGN64894.1 hypothetical protein Csa_022738 [Cucumis sativus])

HSP 1 Score: 578 bits (1489), Expect = 1.31e-206
Identity = 300/330 (90.91%), Postives = 314/330 (95.15%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFA Y RR SHSRSRSRSPYRHRSYEER YG+HGHSRRYDERDAYH+SR+RRHR+TS
Sbjct: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHR SRSRSPRGRKNRSPVREGSEERRAKIEQWN+E+EQ  N NNANSD N N+HEKSY
Sbjct: 241 PGHR-SRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQG-NDNNANSDDNRNNHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 326

[Close]

BLAST of Cp4.1LG20g07480 vs. NCBI nr
Match: XP_008461981.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_008461988.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >KAA0065889.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa] >TYK15128.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 577 bits (1487), Expect = 2.65e-206
Identity = 301/330 (91.21%), Postives = 313/330 (94.85%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFA Y RRRSHSRSRSRSPYRHRSYEER YGRHGHSRRYDERDAYH++R+RR R+TS
Sbjct: 181 RHELFAMYRRRRSHSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYHENRSRRRRTTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHR SRSRSPRGRKNRSP REGSEERRAKIEQWNRE+EQ  N NNA SD N NSHEKSY
Sbjct: 241 PGHR-SRSRSPRGRKNRSPAREGSEERRAKIEQWNREREQG-NDNNAKSDDNRNSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 326

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy TrEMBL
Match: A0A6J1HM65 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111464850 PE=4 SV=1)

HSP 1 Score: 644 bits (1660), Expect = 6.43e-233
Identity = 327/330 (99.09%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS
Sbjct: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQ+NYNN+NSDG+ENSHEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQKNYNNSNSDGHENSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           NGDVQYENQTCGYKQQQQQQQKPPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy TrEMBL
Match: A0A6J1I2J7 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111469321 PE=4 SV=1)

HSP 1 Score: 634 bits (1635), Expect = 4.00e-229
Identity = 325/330 (98.48%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFASYHRRR HSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS
Sbjct: 181 RHELFASYHRRRGHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHRGSRSRSPRGRKNRSPVRE SEERRAKIEQWNREKEQ ENYNNANSDGNE+SHEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREESEERRAKIEQWNREKEQ-ENYNNANSDGNEHSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           NGDVQYENQTCGYKQQQQQQQ+PPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQQPPEQGYGY 329

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy TrEMBL
Match: A0A0A0LVA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145960 PE=4 SV=1)

HSP 1 Score: 578 bits (1489), Expect = 6.36e-207
Identity = 300/330 (90.91%), Postives = 314/330 (95.15%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFA Y RR SHSRSRSRSPYRHRSYEER YG+HGHSRRYDERDAYH+SR+RRHR+TS
Sbjct: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHR SRSRSPRGRKNRSPVREGSEERRAKIEQWN+E+EQ  N NNANSD N N+HEKSY
Sbjct: 241 PGHR-SRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQG-NDNNANSDDNRNNHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 326

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy TrEMBL
Match: A0A1S3CFU2 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103500459 PE=4 SV=1)

HSP 1 Score: 577 bits (1487), Expect = 1.28e-206
Identity = 301/330 (91.21%), Postives = 313/330 (94.85%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFA Y RRRSHSRSRSRSPYRHRSYEER YGRHGHSRRYDERDAYH++R+RR R+TS
Sbjct: 181 RHELFAMYRRRRSHSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYHENRSRRRRTTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHR SRSRSPRGRKNRSP REGSEERRAKIEQWNRE+EQ  N NNA SD N NSHEKSY
Sbjct: 241 PGHR-SRSRSPRGRKNRSPAREGSEERRAKIEQWNREREQG-NDNNAKSDDNRNSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 326

[Close]

BLAST of Cp4.1LG20g07480 vs. ExPASy TrEMBL
Match: A0A5D3CV58 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00620 PE=4 SV=1)

HSP 1 Score: 577 bits (1487), Expect = 1.28e-206
Identity = 301/330 (91.21%), Postives = 313/330 (94.85%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240
           RHELFA Y RRRSHSRSRSRSPYRHRSYEER YGRHGHSRRYDERDAYH++R+RR R+TS
Sbjct: 181 RHELFAMYRRRRSHSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYHENRSRRRRTTS 240

Query: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300
           PGHR SRSRSPRGRKNRSP REGSEERRAKIEQWNRE+EQ  N NNA SD N NSHEKSY
Sbjct: 241 PGHR-SRSRSPRGRKNRSPAREGSEERRAKIEQWNREREQG-NDNNAKSDDNRNSHEKSY 300

Query: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 326

[Close]

BLAST of Cp4.1LG20g07480 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 386.7 bits (992), Expect = 1.8e-107
Identity = 207/291 (71.13%), Postives = 232/291 (79.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVD QG P+DP KIQDHFE+FYED+F+ELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFASY---HRRRSHSRSRSRSPYRHRSY-EERHYG------RHGHSRRYDERDAYHD 240
           R +LF  Y   +RR S SRSRS SP R R +  ER  G      RHG+ +R  +R   HD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 -SRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQ 281
                R R  SP     RSRSPR       VREGSEERRA+IEQWNRE+++
Sbjct: 241 RDGGGRRRHGSP----KRSRSPRN------VREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Cp4.1LG20g07480 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 386.7 bits (992), Expect = 1.8e-107
Identity = 207/291 (71.13%), Postives = 232/291 (79.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVD QG P+DP KIQDHFE+FYED+F+ELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFASY---HRRRSHSRSRSRSPYRHRSY-EERHYG------RHGHSRRYDERDAYHD 240
           R +LF  Y   +RR S SRSRS SP R R +  ER  G      RHG+ +R  +R   HD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 -SRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQ 281
                R R  SP     RSRSPR       VREGSEERRA+IEQWNRE+++
Sbjct: 241 RDGGGRRRHGSP----KRSRSPRN------VREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Cp4.1LG20g07480 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 382.5 bits (981), Expect = 3.5e-106
Identity = 202/292 (69.18%), Postives = 228/292 (78.08%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQG P+DPRKIQ+HFE+F+EDLF+EL K+GEIESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RHELFASYHR-----RRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHD----- 240
           R +LF  Y R      RS SRSRS SP   R  + R       S R  +R+ Y       
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQE 283
           S  R  R    G RG R  SP+   +    REGSEERRA+IEQWNRE+E++E
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Cp4.1LG20g07480 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 279.3 bits (713), Expect = 4.1e-75
Identity = 155/242 (64.05%), Postives = 179/242 (73.97%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVG 110
           MYQRPDMITPGVDAQG P+DPRKIQ+HFE+F+EDLF+EL K+GEIESLN+CDNLADHM+G
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFQEEEQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNF 170
           NVYVQF+EE+QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHLKRISRELRHELFASYHR-----RRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDER 230
           MH+K +SRELR +LF  Y R      RS SRSRS SP   R  + R       S R  +R
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 DAYHD-----SRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQ 283
           + Y       S  R  R    G RG R  SP+   +    REGSEERRA+IEQWNRE+E+
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREE 240

[Close]

BLAST of Cp4.1LG20g07480 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-22
Identity = 109/357 (30.53%), Postives = 171/357 (47.90%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEEQAANALRN 128
               + +  +EEFYED+  E  KYGE+ +  VC N + H+ GNVYV ++  E A  A ++
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---MCNRGGYCNFMHLKR---------- 188
           ++GR++AG+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  R          
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 --------------------ISRELRHELFASYHRRRSH-SRSRSRSPYRHRSYEERHYG 248
                                 + + HE   S +   S  S    R P R     +  + 
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 RHG-----HSRRY--DERDAYHDSRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEER 308
             G      SR+Y  D +D+  + + RRH      H G  S S  G    S  RE  +ER
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTREDKLRRHAENC--HDGDDSPSRDG----SLEREMYKER 536

Query: 309 RAKIEQWNREKEQQENYNNANSDGNENSH-----EKSYNGDVQYENQTCGYKQQQQQ 320
           R   +  +R+    E ++  +  G +  H     + S +GD  Y  +  G+K++ ++
Sbjct: 537 RYAKDTLHRDSRWSE-HSPGHRVGRKRIHGRYSDDDSADGD-DYGRRGTGHKRKPRR 583

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	2.6e-106	71.13	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9ZQW8	1.7e-105	70.34	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9S709	4.9e-105	69.18	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	1.2e-98	60.31	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q01081	4.5e-66	58.72	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3	[more]

BLAST of Cp4.1LG20g07480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519661.1	1.97e-234	100.00	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02351...	[more]
XP_022964867.1	1.33e-232	99.09	splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022964868.1 s...	[more]
XP_022970323.1	8.27e-229	98.48	splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970325.1 spl...	[more]
XP_004139466.1	1.31e-206	90.91	splicing factor U2af small subunit B [Cucumis sativus] >XP_011654262.1 splicing ...	[more]
XP_008461981.1	2.65e-206	91.21	PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_00846198...	[more]

BLAST of Cp4.1LG20g07480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HM65	6.43e-233	99.09	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1I2J7	4.00e-229	98.48	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LVA4	6.36e-207	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145960 PE=4 SV=1	[more]
A0A1S3CFU2	1.28e-206	91.21	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10350045...	[more]
A0A5D3CV58	1.28e-206	91.21	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Cp4.1LG20g07480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	1.8e-107	71.13	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	1.8e-107	71.13	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	3.5e-106	69.18	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	4.1e-75	64.05	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	1.1e-22	30.53	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 165..177 score: 66.78 coord: 37..57 score: 57.14 coord: 18..37 score: 85.68 coord: 103..125 score: 64.43 coord: 130..154 score: 62.0 coord: 75..90 score: 50.57
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..310
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 45..142 e-value: 7.5E-4 score: 28.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 4.8E-7 score: 29.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.861064
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.21 score: 20.6 coord: 13..39 e-value: 0.0065 score: 25.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 14..37 e-value: 5.3E-7 score: 29.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.112443
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 10.774557
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 73..142 e-value: 3.3E-6 score: 36.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 4.8E-31 score: 109.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..254
None	No IPR available	PANTHER	PTHR12620:SF39	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..310
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 3.80165E-64 score: 196.431
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07480.1	Cp4.1LG20g07480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding